Wall clock time and date at job start Tue Mar 31 2020 18:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46792 * 2 1 4 4 N 1.30944 * 122.90689 * 90.02592 * 3 2 1 5 5 C 1.29423 * 117.36549 * 179.97438 * 4 3 2 6 6 S 1.70957 * 110.39222 * 0.24677 * 5 4 3 7 7 C 1.35664 * 122.90203 * 269.98297 * 3 2 1 8 8 C 1.46681 * 126.13200 * 0.03976 * 7 3 2 9 9 O 1.21678 * 120.00039 * 354.66142 * 8 7 3 10 10 N 1.34776 * 119.99898 * 174.66427 * 8 7 3 11 11 C 1.47564 * 125.67558 * 184.50137 * 10 8 7 12 12 C 1.55439 * 104.88160 * 156.03032 * 11 10 8 13 13 C 1.53649 * 101.31254 * 35.82881 * 12 11 10 14 14 C 1.53652 * 111.42377 * 204.77376 * 13 12 11 15 15 C 1.55184 * 101.41830 * 272.73376 * 14 13 12 16 16 N 1.47567 * 105.00635 * 324.50495 * 15 14 13 17 17 C 1.36936 * 125.67476 * 203.82621 * 16 15 14 18 18 H 1.08000 * 120.00227 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99702 * 0.04322 * 17 16 15 20 20 N 1.31613 * 120.00304 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46885 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47276 * 119.99562 * 21 19 17 24 24 H 1.48497 * 109.47103 * 239.99640 * 21 19 17 25 25 C 1.47404 * 108.65126 * 23.86237 * 16 15 14 26 26 C 1.47413 * 125.67497 * 4.80814 * 10 8 7 27 27 H 1.08998 * 109.47315 * 300.00341 * 1 2 3 28 28 H 1.09004 * 109.46996 * 60.00073 * 1 2 3 29 29 H 1.08999 * 109.46746 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46868 * 240.00287 * 2 1 3 31 31 H 1.08996 * 109.47251 * 119.99949 * 2 1 3 32 32 H 1.08005 * 124.80288 * 179.97438 * 5 4 3 33 33 H 1.09003 * 110.33383 * 275.02236 * 11 10 8 34 34 H 1.09002 * 110.32986 * 37.25447 * 11 10 8 35 35 H 1.08994 * 111.25084 * 277.75725 * 12 11 10 36 36 H 1.09004 * 110.94508 * 153.76869 * 12 11 10 37 37 H 1.09001 * 111.03184 * 30.76871 * 14 13 12 38 38 H 1.09001 * 111.03951 * 154.69539 * 14 13 12 39 39 H 1.08995 * 110.33757 * 205.61780 * 15 14 13 40 40 H 1.09002 * 110.42283 * 83.43193 * 15 14 13 41 41 H 0.96996 * 120.00385 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.98120 * 238.54444 * 25 16 15 43 43 H 1.08996 * 109.98620 * 117.23257 * 25 16 15 44 44 H 1.09001 * 109.98395 * 301.45803 * 26 10 8 45 45 H 1.08990 * 109.98414 * 62.72543 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2699 2.0914 1.0993 5 6 2.6996 3.3058 0.9744 6 16 2.8390 3.7213 -0.6781 7 6 2.2782 2.1155 -1.1390 8 6 2.1029 1.6208 -2.5087 9 8 1.7956 0.4594 -2.7014 10 7 2.2823 2.4528 -3.5538 11 6 2.0491 2.1163 -4.9715 12 6 1.7883 3.4812 -5.6680 13 6 2.7461 4.4016 -4.8958 14 6 2.2780 5.8643 -4.9418 15 6 2.9373 6.3567 -6.2575 16 7 4.2334 5.6540 -6.3216 17 6 5.3370 6.0758 -7.0138 18 1 6.2422 5.4869 -6.9978 19 6 5.2925 7.2605 -7.7360 20 7 4.1894 7.9781 -7.7558 21 14 6.7978 7.8354 -8.6810 22 1 7.9001 6.8572 -8.4987 23 1 6.4649 7.9435 -10.1241 24 1 7.2252 9.1629 -8.1708 25 6 4.1421 4.4222 -5.5172 26 6 2.7502 3.8482 -3.4713 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.9327 3.9650 1.7976 33 1 2.9293 1.6334 -5.3960 34 1 1.1772 1.4693 -5.0687 35 1 0.7533 3.7983 -5.5407 36 1 2.0546 3.4369 -6.7241 37 1 1.1913 5.9256 -5.0019 38 1 2.6527 6.4223 -4.0837 39 1 3.0923 7.4350 -6.2231 40 1 2.3195 6.0908 -7.1152 41 1 4.1583 8.8061 -8.2601 42 1 4.8989 4.4327 -4.7327 43 1 4.2787 3.5494 -6.1556 44 1 2.0760 4.4307 -2.8435 45 1 3.7598 3.8790 -3.0619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041343810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:15 Heat of formation + Delta-G solvation = 24.053439 kcal Electronic energy + Delta-G solvation = -27162.840503 eV Core-core repulsion = 23500.182676 eV Total energy + Delta-G solvation = -3662.657828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.76152 -41.00980 -39.52999 -37.19833 -34.56002 -34.39828 -32.47730 -31.39997 -30.24978 -29.83307 -27.52547 -27.10241 -25.28265 -24.40019 -24.02406 -22.19216 -21.98120 -20.38005 -19.63614 -19.37495 -18.78752 -17.61726 -17.20180 -16.99621 -16.78695 -16.02594 -15.88191 -15.69345 -15.56159 -15.20240 -14.94820 -14.73992 -14.43884 -14.15458 -13.94454 -13.83733 -13.54410 -13.36222 -13.14512 -12.98136 -12.92536 -12.79394 -12.72567 -12.41066 -12.29668 -11.97807 -11.90306 -11.77584 -11.62645 -11.53861 -11.26343 -11.03987 -10.70921 -10.62488 -10.58142 -10.09034 -9.64333 -8.84787 -7.75157 -5.18222 -0.78822 0.19916 0.59439 1.35922 1.48382 1.49119 1.58783 1.76494 2.02353 2.50908 3.13367 3.27552 3.32606 3.43504 3.59728 3.67986 3.84543 3.97490 4.08681 4.17166 4.23485 4.28363 4.37926 4.42921 4.45818 4.58451 4.64259 4.69317 4.74071 4.81466 4.86621 4.97559 5.01483 5.05404 5.07923 5.17336 5.19894 5.24442 5.30488 5.33672 5.50234 5.69736 5.86881 6.25728 6.35184 6.58381 6.89160 7.14558 7.81138 8.44440 9.26517 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.002915 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.053382 B = 9604.501145 C =10176.668590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C 0.142 3.858 4 N -0.500 5.500 5 C 0.031 3.969 6 S 0.216 5.784 7 C -0.324 4.324 8 C 0.608 3.392 9 O -0.554 6.554 10 N -0.612 5.612 11 C 0.114 3.886 12 C -0.107 4.107 13 C -0.067 4.067 14 C -0.115 4.115 15 C 0.157 3.843 16 N -0.624 5.624 17 C -0.235 4.235 18 H 0.077 0.923 19 C -0.063 4.063 20 N -0.946 5.946 21 Si 0.974 3.026 22 H -0.270 1.270 23 H -0.294 1.294 24 H -0.291 1.291 25 C 0.149 3.851 26 C 0.112 3.888 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.242 0.758 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.071 0.929 40 H -0.010 1.010 41 H 0.246 0.754 42 H 0.027 0.973 43 H 0.022 0.978 44 H 0.094 0.906 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -9.344 16.800 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.103 4.103 3 C 0.002 3.998 4 N -0.214 5.214 5 C -0.263 4.263 6 S 0.474 5.526 7 C -0.448 4.448 8 C 0.398 3.602 9 O -0.435 6.435 10 N -0.344 5.344 11 C -0.008 4.008 12 C -0.145 4.145 13 C -0.069 4.069 14 C -0.154 4.154 15 C 0.032 3.968 16 N -0.350 5.350 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.256 4.256 20 N -0.596 5.596 21 Si 0.803 3.197 22 H -0.194 1.194 23 H -0.222 1.222 24 H -0.218 1.218 25 C 0.024 3.976 26 C -0.012 4.012 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.258 0.742 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.008 0.992 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.112 0.888 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.886 -9.073 16.676 20.195 hybrid contribution 0.698 -0.238 -0.873 1.143 sum -6.188 -9.311 15.803 19.358 Atomic orbital electron populations 1.21540 0.93184 1.02863 1.01081 1.20439 0.97282 0.88356 1.04216 1.20880 0.94984 0.98530 0.85358 1.66229 1.16649 1.07433 1.31074 1.29620 0.98062 0.95567 1.03063 1.84372 1.57658 1.09244 1.01359 1.25385 1.20265 1.01024 0.98121 1.16462 0.76958 0.84377 0.82447 1.90747 1.50527 1.17078 1.85128 1.48516 1.65519 1.13369 1.07014 1.22403 1.01868 0.97699 0.78844 1.22668 0.99886 0.92502 0.99424 1.21331 0.95676 0.96523 0.93326 1.22748 1.00668 0.93079 0.98866 1.21752 0.84226 0.98629 0.92191 1.44896 1.10683 1.22628 1.56818 1.19428 0.91172 1.03807 1.21982 0.90502 1.25524 1.00084 0.98032 1.01971 1.70035 1.26996 1.16092 1.46445 0.85068 0.79128 0.77817 0.77670 1.19416 1.22170 1.21799 1.21270 0.94211 0.88872 0.93266 1.22087 1.00596 0.81111 0.97356 0.92460 0.94139 0.90403 0.89185 0.89425 0.74235 0.91336 0.89593 0.88765 0.90166 0.89139 0.90746 0.91091 0.99194 0.94378 0.95484 0.96000 0.88792 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.06 -1.42 5.82 29.85 0.17 -1.25 16 3 C 0.14 3.42 6.04 42.09 0.25 3.67 16 4 N -0.50 -10.81 10.50 -190.39 -2.00 -12.81 16 5 C 0.03 0.47 12.22 130.60 1.60 2.07 16 6 S 0.22 3.79 18.74 -56.49 -1.06 2.73 16 7 C -0.32 -7.93 6.40 23.88 0.15 -7.77 16 8 C 0.61 17.17 7.80 86.45 0.67 17.84 16 9 O -0.55 -18.03 14.55 -4.28 -0.06 -18.09 16 10 N -0.61 -15.95 3.34 -817.01 -2.73 -18.68 16 11 C 0.11 2.86 6.87 87.01 0.60 3.46 16 12 C -0.11 -2.77 5.87 31.65 0.19 -2.59 16 13 C -0.07 -1.97 0.61 -51.86 -0.03 -2.00 16 14 C -0.11 -3.64 5.93 31.56 0.19 -3.45 16 15 C 0.16 7.10 5.83 86.92 0.51 7.61 16 16 N -0.62 -30.21 3.41 -693.03 -2.36 -32.57 16 17 C -0.23 -12.69 10.28 84.03 0.86 -11.83 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.06 -3.48 5.49 84.86 0.47 -3.01 16 20 N -0.95 -54.30 10.09 21.65 0.22 -54.08 16 21 Si 0.97 44.55 29.55 68.60 2.03 46.58 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 25 C 0.15 5.64 6.39 86.15 0.55 6.19 16 26 C 0.11 2.73 4.45 86.14 0.38 3.11 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 2.34 5.90 -2.39 -0.01 2.32 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.24 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.09 2.14 7.82 -2.39 -0.02 2.12 16 36 H 0.08 2.32 7.94 -2.39 -0.02 2.30 16 37 H 0.09 2.41 7.78 -2.39 -0.02 2.39 16 38 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 39 H 0.07 3.74 5.89 -2.39 -0.01 3.73 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.03 1.02 7.44 -2.39 -0.02 1.00 16 43 H 0.02 0.85 7.78 -2.39 -0.02 0.83 16 44 H 0.09 1.97 6.35 -2.40 -0.02 1.96 16 45 H 0.08 1.93 6.56 -2.39 -0.02 1.91 16 Total: -1.00 -67.87 364.07 2.30 -65.56 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.00 Total: 11.18 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 7.27 Total: 10.19 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -6.87 Total: -118.15 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.06 Total: -18.09 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.06 Total: 2.73 kcal Total: -67.87 2.30 -65.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041343810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.616 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds