Wall clock time and date at job start Tue Mar 31 2020 18:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47269 * 2 1 4 4 N 1.29427 * 124.80310 * 89.96990 * 3 2 1 5 5 C 1.30943 * 117.35911 * 180.02562 * 4 3 2 6 6 C 1.35662 * 114.19343 * 0.02562 * 5 4 3 7 7 C 1.46687 * 126.13044 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00102 * 5.75016 * 7 6 5 9 9 N 1.34773 * 119.99672 * 185.75349 * 7 6 5 10 10 C 1.47567 * 125.67254 * 175.20809 * 9 7 6 11 11 C 1.55184 * 105.00586 * 203.83929 * 10 9 7 12 12 C 1.53719 * 101.44375 * 324.53031 * 11 10 9 13 13 C 1.53645 * 111.46959 * 154.97113 * 12 11 10 14 14 C 1.55186 * 101.41561 * 155.06085 * 13 12 11 15 15 N 1.47564 * 105.00821 * 324.50414 * 14 13 12 16 16 C 1.36936 * 125.67531 * 203.86322 * 15 14 13 17 17 H 1.07994 * 119.99868 * 170.84631 * 16 15 14 18 18 C 1.38818 * 119.99908 * 350.84038 * 16 15 14 19 19 N 1.31615 * 119.99760 * 345.37315 * 18 16 15 20 20 Si 1.86801 * 120.00000 * 165.37097 * 18 16 15 21 21 H 1.48501 * 109.47076 * 94.98673 * 20 18 16 22 22 H 1.48491 * 109.46990 * 214.99162 * 20 18 16 23 23 H 1.48506 * 109.46968 * 334.98783 * 20 18 16 24 24 C 1.47408 * 108.64859 * 23.85348 * 15 14 13 25 25 C 1.47407 * 125.67856 * 355.17715 * 9 7 6 26 26 S 1.70948 * 124.80147 * 270.28736 * 3 2 1 27 27 H 1.08995 * 109.46553 * 60.00302 * 1 2 3 28 28 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 300.00467 * 1 2 3 30 30 H 1.08995 * 109.47454 * 239.99387 * 2 1 3 31 31 H 1.09007 * 109.46978 * 119.99668 * 2 1 3 32 32 H 1.08002 * 122.90550 * 179.97438 * 5 4 3 33 33 H 1.09004 * 110.33291 * 322.71682 * 10 9 7 34 34 H 1.08998 * 110.33232 * 84.84795 * 10 9 7 35 35 H 1.09003 * 111.03536 * 82.54435 * 11 10 9 36 36 H 1.09003 * 111.03140 * 206.43234 * 11 10 9 37 37 H 1.08996 * 111.03907 * 273.09321 * 13 12 11 38 38 H 1.09003 * 111.03768 * 37.03070 * 13 12 11 39 39 H 1.09006 * 110.33763 * 205.61893 * 14 13 12 40 40 H 1.09004 * 110.42353 * 83.43184 * 14 13 12 41 41 H 0.97000 * 119.99707 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.98408 * 238.55210 * 24 15 14 43 43 H 1.08994 * 109.98189 * 117.25361 * 24 15 14 44 44 H 1.08999 * 109.98121 * 297.25548 * 25 9 7 45 45 H 1.08996 * 109.98169 * 58.51728 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7105 3.3417 0.8931 6 6 2.8406 3.7105 -0.4060 7 6 3.3019 5.0151 -0.8927 8 8 3.7090 5.8489 -0.1056 9 7 3.2746 5.2901 -2.2118 10 6 3.6121 6.5881 -2.8274 11 6 2.8662 6.5935 -4.1882 12 6 2.9679 5.1153 -4.5976 13 6 1.8314 4.7166 -5.5515 14 6 2.4673 3.5164 -6.3022 15 7 3.8950 3.8638 -6.4381 16 6 4.7491 3.3736 -7.3896 17 1 5.7362 3.7979 -7.4992 18 6 4.3462 2.3312 -8.2131 19 7 3.2789 1.6249 -7.9061 20 14 5.3189 1.9311 -9.7569 21 1 6.2940 0.8508 -9.4615 22 1 4.3899 1.4812 -10.8244 23 1 6.0459 3.1434 -10.2120 24 6 4.2487 4.8266 -5.3794 25 6 2.9034 4.3443 -3.2798 26 16 2.3510 2.3430 -1.4037 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.9428 4.0013 1.7162 33 1 3.2612 7.4075 -2.1999 34 1 4.6882 6.6651 -2.9830 35 1 1.8259 6.8936 -4.0630 36 1 3.3723 7.2356 -4.9091 37 1 0.9458 4.4063 -4.9970 38 1 1.5955 5.5281 -6.2400 39 1 2.0107 3.3994 -7.2851 40 1 2.3539 2.6011 -5.7212 41 1 2.9972 0.8968 -8.4818 42 1 4.6291 5.7463 -5.8241 43 1 4.9994 4.3940 -4.7182 44 1 3.6062 3.5114 -3.3006 45 1 1.8918 3.9738 -3.1141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041850950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:30 Heat of formation + Delta-G solvation = 36.211103 kcal Electronic energy + Delta-G solvation = -27092.502406 eV Core-core repulsion = 23430.371775 eV Total energy + Delta-G solvation = -3662.130632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51011 -39.82532 -38.32086 -35.69625 -34.21412 -32.78600 -31.23246 -29.90432 -29.27450 -28.12564 -26.39391 -25.64935 -24.30658 -23.16124 -22.55862 -21.07986 -20.38649 -19.25239 -18.62573 -18.39405 -16.93505 -16.60604 -16.15551 -15.88884 -14.99317 -14.88568 -14.72632 -14.57860 -14.16391 -13.96594 -13.91740 -13.57942 -13.43366 -13.02522 -12.59810 -12.45289 -12.22567 -12.15522 -11.98067 -11.70617 -11.63608 -11.49772 -11.42255 -11.33515 -10.95307 -10.83911 -10.44793 -10.31288 -10.10273 -10.00391 -9.88530 -9.71444 -9.63600 -9.54693 -9.11397 -8.64602 -8.57691 -6.88634 -5.82954 -3.12552 0.15515 1.10652 1.53306 2.35450 2.86210 3.12583 3.35596 3.42607 3.44298 3.88282 4.34973 4.44897 4.58581 4.67342 4.83109 4.87261 4.92205 4.94178 5.17893 5.21173 5.31159 5.35898 5.40238 5.53480 5.56339 5.61193 5.65616 5.68595 5.77463 5.87380 5.90075 5.91184 5.99583 6.08813 6.19438 6.20509 6.39101 6.46366 6.61394 6.70665 7.34814 7.37068 7.47540 7.52810 7.70580 7.99717 8.16778 9.11621 9.74172 10.41170 11.30919 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003796 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.180000 B = 7374.882636 C = 9028.880266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.038 3.962 4 N -0.483 5.483 5 C 0.118 3.882 6 C -0.299 4.299 7 C 0.611 3.389 8 O -0.536 6.536 9 N -0.611 5.611 10 C 0.110 3.890 11 C -0.118 4.118 12 C -0.075 4.075 13 C -0.132 4.132 14 C 0.172 3.828 15 N -0.601 5.601 16 C -0.232 4.232 17 H 0.076 0.924 18 C -0.004 4.004 19 N -0.915 5.915 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.150 3.850 25 C 0.106 3.894 26 S 0.209 5.791 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.185 0.815 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.023 0.977 44 H 0.082 0.918 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 2.073 12.994 14.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.236 4.236 4 N -0.198 5.198 5 C -0.041 4.041 6 C -0.423 4.423 7 C 0.399 3.601 8 O -0.415 6.415 9 N -0.344 5.344 10 C -0.012 4.012 11 C -0.157 4.157 12 C -0.076 4.076 13 C -0.171 4.171 14 C 0.047 3.953 15 N -0.328 5.328 16 C -0.360 4.360 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.561 5.561 20 Si 0.736 3.264 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.024 3.976 25 C -0.017 4.017 26 S 0.468 5.532 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.202 0.798 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.452 1.833 12.733 14.392 hybrid contribution 0.779 0.163 -0.072 0.799 sum -5.673 1.997 12.661 14.017 Atomic orbital electron populations 1.21778 0.93210 1.02809 1.02768 1.20307 0.96937 0.87382 1.04661 1.27815 1.00596 1.02216 0.92937 1.66265 1.15833 1.05945 1.31725 1.22103 0.95293 0.91453 0.95262 1.25730 1.17864 1.00601 0.98088 1.16289 0.78108 0.84870 0.80844 1.90817 1.48045 1.48013 1.54627 1.48508 1.66774 1.14295 1.04868 1.22345 1.00145 0.84806 0.93857 1.22728 1.01007 0.96335 0.95590 1.21469 0.99220 0.93801 0.93149 1.22887 0.95516 1.01081 0.97648 1.21453 0.83711 0.91472 0.98639 1.44616 1.06544 1.49964 1.31673 1.18987 0.96471 1.12495 1.08054 0.90636 1.24753 0.98425 0.96814 1.00063 1.69975 1.26972 1.21336 1.37842 0.86202 0.78903 0.78048 0.83231 1.21637 1.21566 1.20580 1.21164 0.92470 0.93810 0.90146 1.22166 1.00801 0.92422 0.86320 1.84756 1.56624 1.02929 1.08896 0.92117 0.91151 0.91994 0.89135 0.88672 0.79802 0.90377 0.90903 0.90468 0.89119 0.91822 0.91243 0.91682 0.95252 0.93687 0.95117 0.95917 0.90011 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.90 37.16 0.37 -0.75 16 2 C -0.05 -0.46 6.51 -27.88 -0.18 -0.64 16 3 C 0.04 0.45 6.64 -13.29 -0.09 0.36 16 4 N -0.48 -6.42 10.51 -11.50 -0.12 -6.54 16 5 C 0.12 1.59 11.10 -18.85 -0.21 1.38 16 6 C -0.30 -4.24 6.40 -37.09 -0.24 -4.48 16 7 C 0.61 9.65 7.81 -12.85 -0.10 9.55 16 8 O -0.54 -9.65 17.17 5.20 0.09 -9.57 16 9 N -0.61 -8.97 3.34 -172.39 -0.58 -9.54 16 10 C 0.11 1.43 6.86 -2.30 -0.02 1.41 16 11 C -0.12 -1.45 6.04 -25.20 -0.15 -1.61 16 12 C -0.08 -1.15 0.60 -153.99 -0.09 -1.25 16 13 C -0.13 -2.16 6.04 -25.24 -0.15 -2.31 16 14 C 0.17 3.78 5.39 -2.30 -0.01 3.76 16 15 N -0.60 -14.33 3.41 -170.40 -0.58 -14.91 16 16 C -0.23 -6.19 10.22 -15.06 -0.15 -6.34 16 17 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 18 C 0.00 -0.10 5.34 -17.43 -0.09 -0.19 16 19 N -0.91 -25.58 10.87 55.49 0.60 -24.98 16 20 Si 0.91 21.29 29.58 -169.99 -5.03 16.27 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.15 2.87 6.40 -3.64 -0.02 2.85 16 25 C 0.11 1.57 4.35 -3.64 -0.02 1.55 16 26 S 0.21 2.62 18.70 -107.50 -2.01 0.61 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.19 2.24 8.06 -52.49 -0.42 1.81 16 33 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 36 H 0.09 1.04 7.62 -51.93 -0.40 0.64 16 37 H 0.06 0.90 7.62 -51.93 -0.40 0.51 16 38 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 40 H 0.03 0.69 8.05 -51.93 -0.42 0.28 16 41 H 0.25 6.88 8.31 -40.82 -0.34 6.55 16 42 H 0.03 0.58 7.53 -51.93 -0.39 0.19 16 43 H 0.02 0.46 7.61 -51.93 -0.39 0.06 16 44 H 0.08 1.34 6.74 -51.93 -0.35 0.99 16 45 H 0.07 1.03 6.03 -51.93 -0.31 0.72 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -31.24 370.07 -10.00 -41.24 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.79 Total: -1.47 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.16 Total: 3.30 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.68 Total: -55.96 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.01 Total: 0.61 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.24 -10.00 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041850950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.453 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds