Wall clock time and date at job start Tue Mar 31 2020 18:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47269 * 2 1 4 4 N 1.29427 * 124.80310 * 89.96990 * 3 2 1 5 5 C 1.30943 * 117.35911 * 180.02562 * 4 3 2 6 6 C 1.35662 * 114.19343 * 0.02562 * 5 4 3 7 7 C 1.46687 * 126.13044 * 180.02562 * 6 5 4 8 8 O 1.21683 * 120.00102 * 5.75016 * 7 6 5 9 9 N 1.34773 * 119.99672 * 185.75349 * 7 6 5 10 10 C 1.47567 * 125.67254 * 175.20809 * 9 7 6 11 11 C 1.55184 * 105.00586 * 203.83929 * 10 9 7 12 12 C 1.53719 * 101.44375 * 324.53031 * 11 10 9 13 13 C 1.53645 * 111.46959 * 154.97113 * 12 11 10 14 14 C 1.55186 * 101.41561 * 155.06085 * 13 12 11 15 15 N 1.47564 * 105.00821 * 324.50414 * 14 13 12 16 16 C 1.36936 * 125.67531 * 203.86322 * 15 14 13 17 17 H 1.07994 * 119.99868 * 170.84631 * 16 15 14 18 18 C 1.38818 * 119.99908 * 350.84038 * 16 15 14 19 19 N 1.31615 * 119.99760 * 345.37315 * 18 16 15 20 20 Si 1.86801 * 120.00000 * 165.37097 * 18 16 15 21 21 H 1.48501 * 109.47076 * 94.98673 * 20 18 16 22 22 H 1.48491 * 109.46990 * 214.99162 * 20 18 16 23 23 H 1.48506 * 109.46968 * 334.98783 * 20 18 16 24 24 C 1.47408 * 108.64859 * 23.85348 * 15 14 13 25 25 C 1.47407 * 125.67856 * 355.17715 * 9 7 6 26 26 S 1.70948 * 124.80147 * 270.28736 * 3 2 1 27 27 H 1.08995 * 109.46553 * 60.00302 * 1 2 3 28 28 H 1.09001 * 109.46995 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47120 * 300.00467 * 1 2 3 30 30 H 1.08995 * 109.47454 * 239.99387 * 2 1 3 31 31 H 1.09007 * 109.46978 * 119.99668 * 2 1 3 32 32 H 1.08002 * 122.90550 * 179.97438 * 5 4 3 33 33 H 1.09004 * 110.33291 * 322.71682 * 10 9 7 34 34 H 1.08998 * 110.33232 * 84.84795 * 10 9 7 35 35 H 1.09003 * 111.03536 * 82.54435 * 11 10 9 36 36 H 1.09003 * 111.03140 * 206.43234 * 11 10 9 37 37 H 1.08996 * 111.03907 * 273.09321 * 13 12 11 38 38 H 1.09003 * 111.03768 * 37.03070 * 13 12 11 39 39 H 1.09006 * 110.33763 * 205.61893 * 14 13 12 40 40 H 1.09004 * 110.42353 * 83.43184 * 14 13 12 41 41 H 0.97000 * 119.99707 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.98408 * 238.55210 * 24 15 14 43 43 H 1.08994 * 109.98189 * 117.25361 * 24 15 14 44 44 H 1.08999 * 109.98121 * 297.25548 * 25 9 7 45 45 H 1.08996 * 109.98169 * 58.51728 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7105 3.3417 0.8931 6 6 2.8406 3.7105 -0.4060 7 6 3.3019 5.0151 -0.8927 8 8 3.7090 5.8489 -0.1056 9 7 3.2746 5.2901 -2.2118 10 6 3.6121 6.5881 -2.8274 11 6 2.8662 6.5935 -4.1882 12 6 2.9679 5.1153 -4.5976 13 6 1.8314 4.7166 -5.5515 14 6 2.4673 3.5164 -6.3022 15 7 3.8950 3.8638 -6.4381 16 6 4.7491 3.3736 -7.3896 17 1 5.7362 3.7979 -7.4992 18 6 4.3462 2.3312 -8.2131 19 7 3.2789 1.6249 -7.9061 20 14 5.3189 1.9311 -9.7569 21 1 6.2940 0.8508 -9.4615 22 1 4.3899 1.4812 -10.8244 23 1 6.0459 3.1434 -10.2120 24 6 4.2487 4.8266 -5.3794 25 6 2.9034 4.3443 -3.2798 26 16 2.3510 2.3430 -1.4037 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.9428 4.0013 1.7162 33 1 3.2612 7.4075 -2.1999 34 1 4.6882 6.6651 -2.9830 35 1 1.8259 6.8936 -4.0630 36 1 3.3723 7.2356 -4.9091 37 1 0.9458 4.4063 -4.9970 38 1 1.5955 5.5281 -6.2400 39 1 2.0107 3.3994 -7.2851 40 1 2.3539 2.6011 -5.7212 41 1 2.9972 0.8968 -8.4818 42 1 4.6291 5.7463 -5.8241 43 1 4.9994 4.3940 -4.7182 44 1 3.6062 3.5114 -3.3006 45 1 1.8918 3.9738 -3.1141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041850950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:29 Heat of formation + Delta-G solvation = 17.605820 kcal Electronic energy + Delta-G solvation = -27093.309192 eV Core-core repulsion = 23430.371775 eV Total energy + Delta-G solvation = -3662.937417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70537 -40.90275 -39.62010 -37.18688 -34.99962 -34.48970 -32.57192 -31.37349 -30.45874 -29.50245 -27.57438 -27.10651 -25.67844 -24.26746 -23.57918 -22.35492 -21.91796 -20.49844 -19.73084 -19.47658 -18.73624 -17.73902 -17.34226 -17.05348 -16.71234 -16.11550 -15.84179 -15.72510 -15.60883 -15.15776 -14.90787 -14.80590 -14.58229 -14.24547 -14.02253 -13.83318 -13.41809 -13.27026 -13.20024 -12.93864 -12.90101 -12.71365 -12.64124 -12.54665 -12.43192 -12.09851 -12.01007 -11.83622 -11.70888 -11.48900 -11.36360 -11.26044 -10.66144 -10.61290 -10.58647 -10.18077 -9.71799 -8.82548 -7.87131 -5.17370 -0.86795 0.10018 0.52500 1.27983 1.47926 1.49544 1.58627 1.73153 1.99644 2.51863 2.97027 3.23511 3.30900 3.44546 3.57909 3.64650 3.83573 3.87622 4.14293 4.14763 4.18863 4.23983 4.27752 4.33687 4.43667 4.63883 4.64855 4.67386 4.74936 4.83894 4.88691 4.94965 4.98251 5.03854 5.05541 5.08109 5.16092 5.23792 5.30821 5.30996 5.49226 5.64139 5.78133 6.18347 6.22611 6.51074 6.80914 7.11855 7.79471 8.45692 9.25374 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003796 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.180000 B = 7374.882636 C = 9028.880266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C 0.050 3.950 4 N -0.499 5.499 5 C 0.121 3.879 6 C -0.321 4.321 7 C 0.610 3.390 8 O -0.565 6.565 9 N -0.611 5.611 10 C 0.106 3.894 11 C -0.104 4.104 12 C -0.068 4.068 13 C -0.114 4.114 14 C 0.176 3.824 15 N -0.622 5.622 16 C -0.245 4.245 17 H 0.074 0.926 18 C -0.055 4.055 19 N -0.941 5.941 20 Si 0.967 3.033 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.272 1.272 24 C 0.149 3.851 25 C 0.113 3.887 26 S 0.209 5.791 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.192 0.808 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.029 0.971 40 H 0.004 0.996 41 H 0.248 0.752 42 H 0.041 0.959 43 H 0.010 0.990 44 H 0.062 0.938 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.283 2.650 13.341 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.223 4.223 4 N -0.214 5.214 5 C -0.038 4.038 6 C -0.445 4.445 7 C 0.398 3.602 8 O -0.446 6.446 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.142 4.142 12 C -0.069 4.069 13 C -0.153 4.153 14 C 0.051 3.949 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.092 0.908 18 C -0.249 4.249 19 N -0.589 5.589 20 Si 0.795 3.205 21 H -0.217 1.217 22 H -0.219 1.219 23 H -0.197 1.197 24 C 0.024 3.976 25 C -0.010 4.010 26 S 0.468 5.532 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.209 0.791 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.221 2.438 13.074 15.133 hybrid contribution 1.053 -0.092 -0.133 1.065 sum -6.168 2.346 12.940 14.526 Atomic orbital electron populations 1.21776 0.92109 1.04069 1.02297 1.20539 0.97753 0.85513 1.05823 1.28392 0.98714 1.03093 0.92128 1.66339 1.16837 1.06024 1.32180 1.22302 0.94435 0.91672 0.95390 1.25636 1.19510 1.00703 0.98654 1.16468 0.77685 0.85085 0.80916 1.90791 1.49536 1.49053 1.55259 1.48554 1.66323 1.14852 1.04560 1.22492 1.00315 0.84378 0.94343 1.22718 1.02559 0.93814 0.95066 1.21343 0.96626 0.96372 0.92580 1.22752 0.96251 0.98764 0.97490 1.21283 0.83322 0.93179 0.97082 1.44906 1.07177 1.50426 1.32384 1.19312 0.96930 1.12348 1.08820 0.90768 1.25469 0.99669 0.97134 1.02618 1.70138 1.28427 1.21768 1.38572 0.85253 0.77535 0.77842 0.79833 1.21662 1.21852 1.19653 1.21297 0.94248 0.92808 0.89276 1.22042 1.00982 0.91843 0.86170 1.84720 1.56709 1.02639 1.09155 0.92413 0.89071 0.92625 0.87839 0.87604 0.79075 0.89307 0.91097 0.88170 0.87683 0.89072 0.89919 0.95227 0.97774 0.94231 0.94154 0.97211 0.91971 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.90 71.98 0.71 -1.20 16 2 C -0.06 -0.87 6.51 29.85 0.19 -0.67 16 3 C 0.05 1.13 6.64 88.46 0.59 1.71 16 4 N -0.50 -12.78 10.51 -190.30 -2.00 -14.78 16 5 C 0.12 3.21 11.10 84.23 0.93 4.14 16 6 C -0.32 -8.97 6.40 23.88 0.15 -8.82 16 7 C 0.61 18.90 7.81 86.45 0.68 19.58 16 8 O -0.56 -20.17 17.17 -4.29 -0.07 -20.24 16 9 N -0.61 -17.15 3.34 -817.54 -2.73 -19.88 16 10 C 0.11 2.52 6.86 86.92 0.60 3.12 16 11 C -0.10 -2.21 6.04 31.59 0.19 -2.02 16 12 C -0.07 -1.96 0.60 -51.85 -0.03 -1.99 16 13 C -0.11 -3.48 6.04 31.56 0.19 -3.29 16 14 C 0.18 7.80 5.39 86.93 0.47 8.27 16 15 N -0.62 -29.89 3.41 -693.01 -2.36 -32.25 16 16 C -0.24 -13.23 10.22 84.04 0.86 -12.37 16 17 H 0.07 3.91 7.87 -2.91 -0.02 3.89 16 18 C -0.05 -2.99 5.34 84.86 0.45 -2.54 16 19 N -0.94 -53.90 10.87 21.65 0.24 -53.67 16 20 Si 0.97 44.22 29.58 68.60 2.03 46.25 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 C 0.15 5.59 6.40 86.14 0.55 6.14 16 25 C 0.11 3.21 4.35 86.14 0.37 3.58 16 26 S 0.21 5.09 18.70 -56.49 -1.06 4.04 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 36 H 0.10 2.01 7.62 -2.39 -0.02 1.99 16 37 H 0.09 2.31 7.62 -2.39 -0.02 2.30 16 38 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 39 H 0.03 1.50 7.07 -2.38 -0.02 1.48 16 40 H 0.00 0.21 8.05 -2.38 -0.02 0.19 16 41 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.04 1.45 7.53 -2.38 -0.02 1.43 16 43 H 0.01 0.40 7.61 -2.39 -0.02 0.38 16 44 H 0.06 2.03 6.74 -2.39 -0.02 2.02 16 45 H 0.09 2.27 6.03 -2.39 -0.01 2.25 16 Total: -1.00 -68.59 370.07 1.94 -66.65 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.99 Total: 10.23 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.91 Total: 13.65 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.86 Total: -120.58 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.07 Total: -20.24 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.06 Total: 4.04 kcal Total: -68.59 1.94 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041850950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.257 kcal (2) G-P(sol) polarization free energy of solvation -68.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds