Wall clock time and date at job start Tue Mar 31 2020 18:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47387 * 2 1 4 4 N 1.30944 * 122.90584 * 269.99573 * 3 2 1 5 5 C 1.29429 * 117.37163 * 179.97438 * 4 3 2 6 6 S 1.70960 * 110.38387 * 359.72957 * 5 4 3 7 7 C 1.35663 * 122.91022 * 89.99862 * 3 2 1 8 8 C 1.46689 * 126.12549 * 359.97438 * 7 3 2 9 9 O 1.21686 * 120.00121 * 321.71254 * 8 7 3 10 10 N 1.34774 * 119.99957 * 141.70960 * 8 7 3 11 11 C 1.46601 * 119.75293 * 354.04270 * 10 8 7 12 12 C 1.53885 * 110.70798 * 228.01982 * 11 10 8 13 13 C 1.51972 * 107.29417 * 308.18618 * 12 11 10 14 14 H 1.09001 * 111.57138 * 303.15203 * 13 12 11 15 15 C 1.53699 * 115.00822 * 175.43909 * 13 12 11 16 16 C 1.55296 * 101.81731 * 206.53973 * 15 13 12 17 17 N 1.48153 * 107.04192 * 22.44465 * 16 15 13 18 18 C 1.36935 * 126.39742 * 184.97614 * 17 16 15 19 19 H 1.08003 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99776 * 0.03254 * 18 17 16 21 21 N 1.31618 * 120.00238 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47318 * 89.99658 * 22 20 18 24 24 H 1.48494 * 109.47120 * 209.99955 * 22 20 18 25 25 H 1.48507 * 109.46804 * 329.99727 * 22 20 18 26 26 C 1.45503 * 107.20655 * 5.00526 * 17 16 15 27 27 H 1.08998 * 108.99188 * 86.35445 * 26 17 16 28 28 C 1.47791 * 119.75535 * 174.31132 * 10 8 7 29 29 H 1.09002 * 109.46930 * 300.00853 * 1 2 3 30 30 H 1.09007 * 109.46758 * 60.00218 * 1 2 3 31 31 H 1.08996 * 109.47479 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47194 * 239.99471 * 2 1 3 33 33 H 1.09007 * 109.46758 * 119.99782 * 2 1 3 34 34 H 1.07990 * 124.80663 * 179.97438 * 5 4 3 35 35 H 1.08992 * 109.22865 * 348.34141 * 11 10 8 36 36 H 1.09000 * 109.22674 * 107.70346 * 11 10 8 37 37 H 1.09005 * 109.88902 * 188.74379 * 12 11 10 38 38 H 1.09001 * 109.89459 * 67.63572 * 12 11 10 39 39 H 1.08999 * 110.96209 * 324.67586 * 15 13 12 40 40 H 1.09008 * 110.95772 * 88.36914 * 15 13 12 41 41 H 1.09006 * 109.91858 * 141.79759 * 16 15 13 42 42 H 1.09004 * 109.92046 * 263.09585 * 16 15 13 43 43 H 0.97006 * 119.99897 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.07152 * 247.68811 * 28 10 8 45 45 H 1.09005 * 110.06551 * 9.14935 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2696 2.0914 -1.0994 5 6 2.6985 3.3061 -0.9745 6 16 2.8368 3.7219 0.6779 7 6 2.2780 2.1157 1.1389 8 6 2.1025 1.6210 2.5087 9 8 1.1565 0.9057 2.7808 10 7 2.9891 1.9589 3.4659 11 6 4.1955 2.7107 3.1075 12 6 5.4444 2.0669 3.7352 13 6 5.1667 1.8954 5.2194 14 1 4.9131 2.8444 5.6919 15 6 6.2651 1.1619 6.0054 16 6 5.4588 0.5504 7.1834 17 7 4.0466 0.4637 6.7442 18 6 2.9804 0.0713 7.5087 19 1 1.9892 0.0458 7.0806 20 6 3.1737 -0.2934 8.8341 21 7 4.3817 -0.2626 9.3557 22 14 1.7192 -0.8280 9.8773 23 1 1.5382 -2.2971 9.7585 24 1 1.9715 -0.4736 11.2971 25 1 0.4916 -0.1383 9.4055 26 6 4.0040 0.8727 5.3484 27 1 4.2086 0.0069 4.7187 28 6 2.7408 1.5636 4.8682 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.9320 3.9651 -1.7976 35 1 4.3033 2.7207 2.0230 36 1 4.1003 3.7351 3.4675 37 1 6.3081 2.7164 3.5921 38 1 5.6303 1.0951 3.2779 39 1 6.7229 0.3804 5.3990 40 1 7.0178 1.8616 6.3690 41 1 5.8375 -0.4451 7.4154 42 1 5.5363 1.1937 8.0600 43 1 4.5167 -0.5172 10.2820 44 1 2.5430 2.4463 5.4763 45 1 1.8951 0.8777 4.9192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042087263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:46 Heat of formation + Delta-G solvation = 43.676733 kcal Electronic energy + Delta-G solvation = -27587.571859 eV Core-core repulsion = 23925.764961 eV Total energy + Delta-G solvation = -3661.806898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.69345 -39.72102 -38.11666 -35.47579 -33.59777 -32.93906 -31.37336 -30.60722 -29.01655 -28.43851 -26.27514 -24.74482 -23.91079 -23.37811 -22.33779 -21.21747 -20.09260 -19.56565 -18.61439 -18.40582 -16.90859 -16.50523 -16.19344 -15.47544 -15.10989 -14.71521 -14.49943 -14.41820 -14.27306 -13.95697 -13.86270 -13.55849 -13.26954 -13.06262 -12.74663 -12.54924 -12.29200 -12.04036 -11.91904 -11.58094 -11.39138 -11.32674 -10.99695 -10.96306 -10.83078 -10.77500 -10.19121 -10.15232 -10.00706 -10.00382 -9.81262 -9.65656 -9.58278 -9.40107 -9.05263 -8.63899 -8.50855 -6.86961 -5.72798 -3.06709 0.11037 0.92861 1.33565 2.33166 2.87122 3.14559 3.41560 3.47291 3.48591 3.89066 4.45657 4.49835 4.76452 4.79571 4.85515 4.93269 5.10224 5.31099 5.34480 5.35005 5.40381 5.43095 5.58525 5.63823 5.73694 5.85045 5.85619 5.91379 5.97505 6.02729 6.08082 6.10088 6.13414 6.27809 6.34509 6.43850 6.53050 6.65132 6.70793 7.01884 7.34056 7.45416 7.53963 7.59266 7.80017 8.13873 8.22141 9.17953 9.80931 10.47329 11.39469 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.003540 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.063408 B = 7908.760044 C = 9054.050234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C 0.135 3.865 4 N -0.470 5.470 5 C 0.018 3.982 6 S 0.174 5.826 7 C -0.280 4.280 8 C 0.590 3.410 9 O -0.516 6.516 10 N -0.598 5.598 11 C 0.099 3.901 12 C -0.116 4.116 13 C -0.113 4.113 14 H 0.078 0.922 15 C -0.138 4.138 16 C 0.178 3.822 17 N -0.592 5.592 18 C -0.229 4.229 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.156 3.844 27 H 0.025 0.975 28 C 0.119 3.881 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.203 0.797 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.252 0.748 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 9.640 -19.714 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.090 4.090 3 C -0.002 4.002 4 N -0.184 5.184 5 C -0.277 4.277 6 S 0.429 5.571 7 C -0.404 4.404 8 C 0.375 3.625 9 O -0.394 6.394 10 N -0.331 5.331 11 C -0.025 4.025 12 C -0.155 4.155 13 C -0.133 4.133 14 H 0.097 0.903 15 C -0.176 4.176 16 C 0.053 3.947 17 N -0.317 5.317 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.047 3.953 27 H 0.042 0.958 28 C -0.003 4.003 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.220 0.780 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.029 9.946 -19.336 21.769 hybrid contribution -0.818 -0.911 0.468 1.310 sum 0.212 9.036 -18.869 20.922 Atomic orbital electron populations 1.21670 0.93468 1.02287 1.02441 1.20212 0.97142 0.88166 1.03528 1.20646 0.96113 0.98437 0.84977 1.66087 1.14721 1.06271 1.31290 1.28746 1.01772 0.96165 1.01042 1.84111 1.58370 1.12311 1.02301 1.25586 1.16397 0.99025 0.99418 1.16780 0.82968 0.80464 0.82288 1.90836 1.31196 1.36491 1.80829 1.48148 1.21137 1.55335 1.08511 1.21992 0.85181 0.95342 0.99990 1.21768 0.96024 1.01280 0.96378 1.22275 0.98181 0.99479 0.93358 0.90336 1.22730 0.97041 0.98891 0.98943 1.21545 0.81823 0.98834 0.92464 1.44180 1.04427 1.77407 1.05729 1.19043 0.86981 1.37714 0.91990 0.90255 1.24779 0.96761 1.01628 0.96999 1.69943 1.19280 1.53915 1.13718 0.86148 0.81626 0.78500 0.79712 1.21561 1.21702 1.20572 1.20996 0.92062 0.93659 0.88562 0.95768 1.21798 1.00556 1.00286 0.77679 0.91205 0.93040 0.91927 0.90205 0.89559 0.77998 0.90415 0.91252 0.90631 0.91326 0.92555 0.92177 0.94407 0.92594 0.93752 0.90827 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.82 37.15 0.36 -1.32 16 2 C -0.05 -0.63 5.68 -27.89 -0.16 -0.79 16 3 C 0.14 1.75 6.04 -83.89 -0.51 1.24 16 4 N -0.47 -5.49 10.50 -11.53 -0.12 -5.61 16 5 C 0.02 0.15 12.22 51.75 0.63 0.79 16 6 S 0.17 1.57 20.14 -107.50 -2.17 -0.60 16 7 C -0.28 -3.68 5.38 -37.09 -0.20 -3.88 16 8 C 0.59 9.45 7.11 -12.85 -0.09 9.36 16 9 O -0.52 -9.80 14.08 5.20 0.07 -9.73 16 10 N -0.60 -9.23 3.01 -174.28 -0.52 -9.76 16 11 C 0.10 1.19 5.34 -3.53 -0.02 1.17 16 12 C -0.12 -1.47 5.72 -26.79 -0.15 -1.62 16 13 C -0.11 -1.86 2.61 -89.51 -0.23 -2.10 16 14 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 15 C -0.14 -2.45 6.54 -25.15 -0.16 -2.61 16 16 C 0.18 4.19 5.45 -1.92 -0.01 4.18 16 17 N -0.59 -14.72 3.35 -162.90 -0.55 -15.26 16 18 C -0.23 -6.28 9.88 -15.06 -0.15 -6.43 16 19 H 0.08 2.13 7.41 -52.48 -0.39 1.74 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -26.74 10.44 55.49 0.58 -26.17 16 22 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.16 3.15 2.75 -67.82 -0.19 2.97 16 27 H 0.02 0.54 7.94 -51.93 -0.41 0.13 16 28 C 0.12 2.20 5.71 -3.95 -0.02 2.18 16 29 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 30 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.19 7.17 -51.92 -0.37 0.82 16 34 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.08 0.82 4.66 -38.77 -0.18 0.64 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 39 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 41 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 42 H 0.06 1.46 7.21 -51.93 -0.37 1.08 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.10 1.99 6.74 -51.93 -0.35 1.64 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -31.96 361.71 -9.90 -41.85 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.63 Total: -0.24 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.99 Total: 2.89 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.61 Total: -56.79 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.17 Total: -0.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.96 -9.90 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042087263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.532 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds