Wall clock time and date at job start Tue Mar 31 2020 18:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50694 * 109.47387 * 2 1 4 4 N 1.30944 * 122.90584 * 269.99573 * 3 2 1 5 5 C 1.29429 * 117.37163 * 179.97438 * 4 3 2 6 6 S 1.70960 * 110.38387 * 359.72957 * 5 4 3 7 7 C 1.35663 * 122.91022 * 89.99862 * 3 2 1 8 8 C 1.46689 * 126.12549 * 359.97438 * 7 3 2 9 9 O 1.21686 * 120.00121 * 321.71254 * 8 7 3 10 10 N 1.34774 * 119.99957 * 141.70960 * 8 7 3 11 11 C 1.46601 * 119.75293 * 354.04270 * 10 8 7 12 12 C 1.53885 * 110.70798 * 228.01982 * 11 10 8 13 13 C 1.51972 * 107.29417 * 308.18618 * 12 11 10 14 14 H 1.09001 * 111.57138 * 303.15203 * 13 12 11 15 15 C 1.53699 * 115.00822 * 175.43909 * 13 12 11 16 16 C 1.55296 * 101.81731 * 206.53973 * 15 13 12 17 17 N 1.48153 * 107.04192 * 22.44465 * 16 15 13 18 18 C 1.36935 * 126.39742 * 184.97614 * 17 16 15 19 19 H 1.08003 * 120.00171 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99776 * 0.03254 * 18 17 16 21 21 N 1.31618 * 120.00238 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47318 * 89.99658 * 22 20 18 24 24 H 1.48494 * 109.47120 * 209.99955 * 22 20 18 25 25 H 1.48507 * 109.46804 * 329.99727 * 22 20 18 26 26 C 1.45503 * 107.20655 * 5.00526 * 17 16 15 27 27 H 1.08998 * 108.99188 * 86.35445 * 26 17 16 28 28 C 1.47791 * 119.75535 * 174.31132 * 10 8 7 29 29 H 1.09002 * 109.46930 * 300.00853 * 1 2 3 30 30 H 1.09007 * 109.46758 * 60.00218 * 1 2 3 31 31 H 1.08996 * 109.47479 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47194 * 239.99471 * 2 1 3 33 33 H 1.09007 * 109.46758 * 119.99782 * 2 1 3 34 34 H 1.07990 * 124.80663 * 179.97438 * 5 4 3 35 35 H 1.08992 * 109.22865 * 348.34141 * 11 10 8 36 36 H 1.09000 * 109.22674 * 107.70346 * 11 10 8 37 37 H 1.09005 * 109.88902 * 188.74379 * 12 11 10 38 38 H 1.09001 * 109.89459 * 67.63572 * 12 11 10 39 39 H 1.08999 * 110.96209 * 324.67586 * 15 13 12 40 40 H 1.09008 * 110.95772 * 88.36914 * 15 13 12 41 41 H 1.09006 * 109.91858 * 141.79759 * 16 15 13 42 42 H 1.09004 * 109.92046 * 263.09585 * 16 15 13 43 43 H 0.97006 * 119.99897 * 179.97438 * 21 20 18 44 44 H 1.08998 * 110.07152 * 247.68811 * 28 10 8 45 45 H 1.09005 * 110.06551 * 9.14935 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2696 2.0914 -1.0994 5 6 2.6985 3.3061 -0.9745 6 16 2.8368 3.7219 0.6779 7 6 2.2780 2.1157 1.1389 8 6 2.1025 1.6210 2.5087 9 8 1.1565 0.9057 2.7808 10 7 2.9891 1.9589 3.4659 11 6 4.1955 2.7107 3.1075 12 6 5.4444 2.0669 3.7352 13 6 5.1667 1.8954 5.2194 14 1 4.9131 2.8444 5.6919 15 6 6.2651 1.1619 6.0054 16 6 5.4588 0.5504 7.1834 17 7 4.0466 0.4637 6.7442 18 6 2.9804 0.0713 7.5087 19 1 1.9892 0.0458 7.0806 20 6 3.1737 -0.2934 8.8341 21 7 4.3817 -0.2626 9.3557 22 14 1.7192 -0.8280 9.8773 23 1 1.5382 -2.2971 9.7585 24 1 1.9715 -0.4736 11.2971 25 1 0.4916 -0.1383 9.4055 26 6 4.0040 0.8727 5.3484 27 1 4.2086 0.0069 4.7187 28 6 2.7408 1.5636 4.8682 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.9320 3.9651 -1.7976 35 1 4.3033 2.7207 2.0230 36 1 4.1003 3.7351 3.4675 37 1 6.3081 2.7164 3.5921 38 1 5.6303 1.0951 3.2779 39 1 6.7229 0.3804 5.3990 40 1 7.0178 1.8616 6.3690 41 1 5.8375 -0.4451 7.4154 42 1 5.5363 1.1937 8.0600 43 1 4.5167 -0.5172 10.2820 44 1 2.5430 2.4463 5.4763 45 1 1.8951 0.8777 4.9192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042087263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:45 Heat of formation + Delta-G solvation = 23.109408 kcal Electronic energy + Delta-G solvation = -27588.463725 eV Core-core repulsion = 23925.764961 eV Total energy + Delta-G solvation = -3662.698764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79928 -40.83917 -39.50473 -36.93893 -34.71484 -34.51071 -32.95655 -31.89819 -30.44076 -29.92184 -27.20254 -26.56951 -25.32052 -24.29731 -23.64477 -22.37266 -21.82503 -21.02174 -19.51434 -19.45850 -18.60968 -17.78245 -17.32821 -16.90450 -16.59166 -16.04869 -15.79860 -15.60618 -15.51922 -15.25305 -15.02470 -14.79213 -14.59808 -14.37805 -14.02382 -13.84887 -13.65432 -13.37396 -13.17008 -13.09312 -12.96493 -12.76849 -12.57981 -12.25417 -12.17307 -12.01904 -11.93324 -11.77746 -11.56153 -11.49226 -11.25312 -11.06083 -10.74074 -10.72005 -10.38405 -9.89154 -9.72469 -8.92106 -7.87355 -5.22285 -0.71988 0.11951 0.56626 1.40707 1.43322 1.44639 1.53248 1.70893 2.00678 2.48246 3.13266 3.31048 3.37145 3.51114 3.74294 3.89379 3.92299 3.96537 4.07721 4.22485 4.23789 4.28723 4.36246 4.40461 4.46694 4.56315 4.58706 4.66172 4.78195 4.84669 4.87119 4.92519 4.97393 5.06893 5.12836 5.15539 5.20956 5.28103 5.34721 5.47259 5.56409 5.65547 5.77479 6.17792 6.22050 6.59069 6.93625 7.07134 7.75258 8.42104 9.23519 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.003540 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.063408 B = 7908.760044 C = 9054.050234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C 0.135 3.865 4 N -0.497 5.497 5 C 0.039 3.961 6 S 0.236 5.764 7 C -0.322 4.322 8 C 0.587 3.413 9 O -0.561 6.561 10 N -0.598 5.598 11 C 0.094 3.906 12 C -0.107 4.107 13 C -0.095 4.095 14 H 0.081 0.919 15 C -0.122 4.122 16 C 0.181 3.819 17 N -0.613 5.613 18 C -0.238 4.238 19 H 0.075 0.925 20 C -0.060 4.060 21 N -0.948 5.948 22 Si 0.970 3.030 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.272 1.272 26 C 0.148 3.852 27 H 0.005 0.995 28 C 0.132 3.868 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.089 0.911 41 H -0.002 1.002 42 H 0.025 0.975 43 H 0.247 0.753 44 H 0.073 0.927 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.450 12.481 -22.762 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.003 4.003 4 N -0.211 5.211 5 C -0.256 4.256 6 S 0.493 5.507 7 C -0.446 4.446 8 C 0.374 3.626 9 O -0.441 6.441 10 N -0.331 5.331 11 C -0.028 4.028 12 C -0.145 4.145 13 C -0.115 4.115 14 H 0.100 0.900 15 C -0.160 4.160 16 C 0.056 3.944 17 N -0.338 5.338 18 C -0.367 4.367 19 H 0.093 0.907 20 C -0.253 4.253 21 N -0.596 5.596 22 Si 0.799 3.201 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.197 1.197 26 C 0.040 3.960 27 H 0.022 0.978 28 C 0.009 3.991 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.264 0.736 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.017 0.983 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.176 12.831 -22.427 25.930 hybrid contribution -1.166 -1.765 1.313 2.490 sum 1.010 11.066 -21.115 23.860 Atomic orbital electron populations 1.21587 0.93355 1.02672 1.01509 1.20183 0.97267 0.88843 1.03009 1.20675 0.95574 0.98488 0.85535 1.66152 1.16647 1.07678 1.30586 1.29570 0.98351 0.95354 1.02295 1.83815 1.56831 1.08371 1.01727 1.25313 1.19563 1.02198 0.97537 1.17211 0.82214 0.79672 0.83472 1.90804 1.32966 1.38444 1.81890 1.48163 1.22433 1.55566 1.06912 1.22309 0.83230 0.95836 1.01469 1.21771 0.97830 1.02221 0.92704 1.22203 0.95192 0.97864 0.96252 0.90029 1.22602 0.97132 0.99578 0.96660 1.21364 0.82275 0.96518 0.94228 1.44446 1.04417 1.77482 1.07494 1.19312 0.87793 1.37042 0.92533 0.90680 1.25535 0.99158 1.02433 0.98203 1.70145 1.20883 1.55081 1.13529 0.85197 0.79102 0.77829 0.77969 1.21628 1.21592 1.19661 1.21127 0.94862 0.94259 0.85732 0.97752 1.21351 0.98529 0.99246 0.79968 0.93822 0.92011 0.90982 0.88767 0.91873 0.73559 0.88228 0.88816 0.86310 0.91899 0.91380 0.89291 0.98349 0.95713 0.94347 0.90918 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.82 71.98 0.71 -2.55 16 2 C -0.05 -1.34 5.68 29.84 0.17 -1.17 16 3 C 0.14 3.33 6.04 42.09 0.25 3.58 16 4 N -0.50 -10.10 10.50 -190.41 -2.00 -12.10 16 5 C 0.04 0.47 12.22 130.60 1.60 2.07 16 6 S 0.24 3.29 20.14 -56.49 -1.14 2.15 16 7 C -0.32 -8.00 5.38 23.88 0.13 -7.87 16 8 C 0.59 19.01 7.11 86.45 0.61 19.63 16 9 O -0.56 -22.58 14.08 -4.30 -0.06 -22.64 16 10 N -0.60 -18.15 3.01 -823.53 -2.48 -20.63 16 11 C 0.09 1.94 5.34 86.66 0.46 2.40 16 12 C -0.11 -2.30 5.72 30.55 0.17 -2.13 16 13 C -0.10 -2.97 2.61 -10.08 -0.03 -3.00 16 14 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 15 C -0.12 -4.16 6.54 31.62 0.21 -3.95 16 16 C 0.18 8.85 5.45 86.85 0.47 9.32 16 17 N -0.61 -31.78 3.35 -669.30 -2.24 -34.02 16 18 C -0.24 -13.64 9.88 84.03 0.83 -12.81 16 19 H 0.08 4.25 7.41 -2.91 -0.02 4.23 16 20 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 21 N -0.95 -57.44 10.44 21.65 0.23 -57.22 16 22 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 26 C 0.15 6.11 2.75 45.60 0.13 6.24 16 27 H 0.01 0.23 7.94 -2.39 -0.02 0.21 16 28 C 0.13 5.08 5.71 85.73 0.49 5.57 16 29 H 0.04 1.29 7.07 -2.39 -0.02 1.27 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.85 7.17 -2.38 -0.02 1.84 16 34 H 0.25 0.61 8.06 -2.92 -0.02 0.59 16 35 H 0.10 1.68 4.66 -10.76 -0.05 1.63 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 39 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 40 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 41 H 0.00 -0.10 7.77 -2.38 -0.02 -0.12 16 42 H 0.02 1.34 7.21 -2.38 -0.02 1.33 16 43 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 44 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.06 2.75 6.74 -2.38 -0.02 2.73 16 Total: -1.00 -76.38 361.71 1.97 -74.41 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.96 Total: 8.53 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.67 Total: 12.33 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -6.49 Total: -123.97 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.64 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.14 Total: 2.15 kcal Total: -76.38 1.97 -74.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042087263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.522 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds