Wall clock time and date at job start Tue Mar 31 2020 18:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50694 * 109.46970 * 2 1 4 4 N 1.30941 * 122.90542 * 270.01762 * 3 2 1 5 5 C 1.29429 * 117.36702 * 179.97438 * 4 3 2 6 6 S 1.70947 * 110.38873 * 0.02562 * 5 4 3 7 7 C 1.35659 * 122.90704 * 89.99821 * 3 2 1 8 8 C 1.46683 * 126.12986 * 359.75603 * 7 3 2 9 9 O 1.21696 * 119.99873 * 41.08363 * 8 7 3 10 10 N 1.34776 * 120.00497 * 221.08070 * 8 7 3 11 11 C 1.46595 * 119.74883 * 5.45860 * 10 8 7 12 12 C 1.53893 * 110.70505 * 132.25301 * 11 10 8 13 13 C 1.51973 * 107.29052 * 51.81604 * 12 11 10 14 14 H 1.08998 * 111.01683 * 56.51913 * 13 12 11 15 15 C 1.53700 * 115.00320 * 184.55543 * 13 12 11 16 16 C 1.55299 * 101.81432 * 153.46979 * 15 13 12 17 17 N 1.48166 * 107.04123 * 337.54960 * 16 15 13 18 18 C 1.36931 * 126.39633 * 175.03560 * 17 16 15 19 19 H 1.08005 * 119.99606 * 179.97438 * 18 17 16 20 20 C 1.38804 * 120.00498 * 359.95580 * 18 17 16 21 21 N 1.31626 * 120.00158 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46909 * 60.00716 * 22 20 18 24 24 H 1.48502 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47294 * 300.00365 * 22 20 18 26 26 C 1.45506 * 107.20140 * 355.00152 * 17 16 15 27 27 H 1.09009 * 109.56958 * 273.37402 * 26 17 16 28 28 C 1.47791 * 119.75593 * 185.18944 * 10 8 7 29 29 H 1.08994 * 109.47083 * 300.00773 * 1 2 3 30 30 H 1.09000 * 109.46808 * 60.00177 * 1 2 3 31 31 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46972 * 239.99770 * 2 1 3 33 33 H 1.09000 * 109.46808 * 119.99823 * 2 1 3 34 34 H 1.07998 * 124.80513 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.23234 * 252.56538 * 11 10 8 36 36 H 1.08999 * 109.23317 * 11.98402 * 11 10 8 37 37 H 1.08997 * 109.89170 * 171.26295 * 12 11 10 38 38 H 1.09000 * 109.88990 * 292.28767 * 12 11 10 39 39 H 1.08997 * 110.96276 * 271.59374 * 15 13 12 40 40 H 1.09001 * 110.96170 * 35.33838 * 15 13 12 41 41 H 1.09001 * 109.92283 * 218.21174 * 16 15 13 42 42 H 1.08998 * 110.09335 * 96.99370 * 16 15 13 43 43 H 0.96996 * 120.00385 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.06400 * 350.47218 * 28 10 8 45 45 H 1.09001 * 110.06460 * 112.03924 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2691 2.0916 -1.0993 5 6 2.6981 3.3063 -0.9744 6 16 2.8447 3.7192 0.6779 7 6 2.2780 2.1156 1.1389 8 6 2.0983 1.6226 2.5087 9 8 2.4268 0.4861 2.7943 10 7 1.5694 2.4281 3.4510 11 6 1.0653 3.7526 3.0762 12 6 -0.3319 3.9925 3.6752 13 6 -0.2426 3.6955 5.1629 14 1 0.5276 4.3035 5.6374 15 6 -1.5766 3.7740 5.9223 16 6 -1.3237 2.8063 7.1103 17 7 -0.2392 1.8853 6.6968 18 6 0.3609 0.9341 7.4779 19 1 1.1456 0.3154 7.0681 20 6 -0.0389 0.7654 8.7964 21 7 -0.9953 1.5193 9.2958 22 14 0.7794 -0.5327 9.8617 23 1 2.2331 -0.2465 9.9616 24 1 0.1761 -0.5119 11.2185 25 1 0.5792 -1.8718 9.2519 26 6 0.0683 2.1798 5.3054 27 1 -0.5956 1.6089 4.6560 28 6 1.4967 1.9671 4.8533 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9312 3.9654 -1.7976 35 1 1.7502 4.5154 3.4463 36 1 1.0058 3.8200 1.9900 37 1 -0.6282 5.0300 3.5213 38 1 -1.0560 3.3267 3.2056 39 1 -1.7638 4.7872 6.2779 40 1 -2.4002 3.4220 5.3011 41 1 -2.2293 2.2397 7.3271 42 1 -1.0173 3.3683 7.9925 43 1 -1.2749 1.4012 10.2170 44 1 1.7529 0.9093 4.9130 45 1 2.1737 2.5528 5.4751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042087264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:49 Heat of formation + Delta-G solvation = 43.531771 kcal Electronic energy + Delta-G solvation = -27691.333873 eV Core-core repulsion = 24029.520689 eV Total energy + Delta-G solvation = -3661.813184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70653 -39.72723 -38.12948 -35.47605 -33.64516 -32.94562 -31.39055 -30.60739 -29.05098 -28.45217 -26.29987 -24.74453 -23.91813 -23.36414 -22.34345 -21.21440 -20.10188 -19.57944 -18.61337 -18.44057 -16.91873 -16.51647 -16.22231 -15.37103 -15.17257 -14.72354 -14.49655 -14.37683 -14.24542 -14.10658 -13.85091 -13.59109 -13.27522 -13.06799 -12.81888 -12.52284 -12.32962 -12.08935 -11.92508 -11.57317 -11.40812 -11.35203 -11.04701 -10.98125 -10.83850 -10.75498 -10.20694 -10.18188 -10.01043 -10.00034 -9.79023 -9.65852 -9.58295 -9.40454 -9.05311 -8.63670 -8.52444 -6.87251 -5.72715 -3.06793 0.11276 0.92184 1.33213 2.33159 2.85155 3.13697 3.42370 3.46653 3.48054 3.89372 4.45125 4.49859 4.75659 4.79576 4.85594 4.92949 5.09432 5.24003 5.30238 5.34937 5.37284 5.42257 5.58326 5.63693 5.73529 5.82626 5.85906 5.87682 5.97488 6.02288 6.04586 6.07818 6.13467 6.20370 6.33426 6.43397 6.52357 6.64705 6.70830 7.01301 7.33504 7.45021 7.53696 7.59044 7.80025 8.12604 8.22297 9.17886 9.80839 10.47230 11.39464 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.003505 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.289927 B = 7986.112022 C = 8685.110621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.136 3.864 4 N -0.470 5.470 5 C 0.018 3.982 6 S 0.174 5.826 7 C -0.280 4.280 8 C 0.592 3.408 9 O -0.520 6.520 10 N -0.597 5.597 11 C 0.099 3.901 12 C -0.117 4.117 13 C -0.113 4.113 14 H 0.078 0.922 15 C -0.137 4.137 16 C 0.177 3.823 17 N -0.591 5.591 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.157 3.843 27 H 0.024 0.976 28 C 0.117 3.883 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.204 0.796 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.095 0.905 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 8.648 -19.645 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.001 4.001 4 N -0.183 5.183 5 C -0.277 4.277 6 S 0.429 5.571 7 C -0.404 4.404 8 C 0.377 3.623 9 O -0.398 6.398 10 N -0.330 5.330 11 C -0.025 4.025 12 C -0.155 4.155 13 C -0.132 4.132 14 H 0.096 0.904 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.316 5.316 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.048 3.952 27 H 0.041 0.959 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.220 0.780 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.113 0.887 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.649 8.710 -19.254 21.638 hybrid contribution 0.140 -1.223 0.452 1.312 sum 4.789 7.487 -18.802 20.797 Atomic orbital electron populations 1.21679 0.93877 1.02452 1.01954 1.20417 0.96561 0.88572 1.04884 1.20620 0.96436 0.98122 0.84929 1.66095 1.14879 1.06066 1.31294 1.28731 1.01820 0.96197 1.00946 1.84097 1.59143 1.11472 1.02401 1.25544 1.16819 0.98633 0.99423 1.16772 0.78177 0.85023 0.82286 1.90819 1.51072 1.17720 1.80167 1.48154 1.59282 1.16546 1.08980 1.21985 0.96511 0.84044 0.99943 1.21781 0.95400 1.01796 0.96548 1.22270 0.98985 0.98584 0.93399 0.90356 1.22711 0.95671 1.00113 0.99016 1.21553 0.91088 0.89525 0.92539 1.44157 1.41135 1.40166 1.06167 1.18995 1.14848 1.09861 0.92123 0.90311 1.24774 0.98755 0.99514 0.97069 1.69931 1.31087 1.41198 1.14658 0.86224 0.78740 0.81323 0.79663 1.21088 1.21615 1.21079 1.20882 0.92922 0.92766 0.88675 0.95880 1.21725 0.99146 1.01836 0.77747 0.92607 0.92582 0.91548 0.89883 0.87972 0.77973 0.91237 0.90446 0.90637 0.91352 0.92168 0.92520 0.94432 0.92532 0.93690 0.88660 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.90 37.16 0.37 -1.25 16 2 C -0.06 -0.81 6.13 -27.88 -0.17 -0.98 16 3 C 0.14 1.76 6.04 -83.90 -0.51 1.26 16 4 N -0.47 -5.49 10.50 -11.54 -0.12 -5.61 16 5 C 0.02 0.16 12.22 51.75 0.63 0.79 16 6 S 0.17 1.58 20.29 -107.50 -2.18 -0.60 16 7 C -0.28 -3.71 5.31 -37.10 -0.20 -3.91 16 8 C 0.59 9.59 7.29 -12.85 -0.09 9.50 16 9 O -0.52 -10.10 14.58 5.19 0.08 -10.02 16 10 N -0.60 -9.26 3.02 -174.55 -0.53 -9.78 16 11 C 0.10 1.20 5.37 -3.53 -0.02 1.18 16 12 C -0.12 -1.48 5.72 -26.79 -0.15 -1.63 16 13 C -0.11 -1.85 2.62 -89.52 -0.23 -2.09 16 14 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 15 C -0.14 -2.42 6.54 -25.15 -0.16 -2.59 16 16 C 0.18 4.17 5.46 -1.91 -0.01 4.16 16 17 N -0.59 -14.68 3.35 -163.15 -0.55 -15.23 16 18 C -0.23 -6.31 9.88 -15.06 -0.15 -6.46 16 19 H 0.08 2.11 7.41 -52.48 -0.39 1.72 16 20 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 21 N -0.92 -26.72 10.43 55.49 0.58 -26.14 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.16 3.16 2.74 -68.05 -0.19 2.97 16 27 H 0.02 0.51 7.93 -51.92 -0.41 0.10 16 28 C 0.12 2.19 5.67 -4.18 -0.02 2.16 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.47 6.18 -51.93 -0.32 1.15 16 34 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.82 4.75 -41.84 -0.20 0.62 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.04 0.98 7.77 -51.93 -0.40 0.58 16 42 H 0.06 1.47 7.19 -51.93 -0.37 1.10 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.10 2.00 6.73 -51.93 -0.35 1.65 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -32.08 363.13 -9.92 -42.00 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.65 Total: -0.13 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -1.00 Total: 2.90 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.62 Total: -56.76 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.18 Total: -0.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.08 -9.92 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042087264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.531 kcal (2) G-P(sol) polarization free energy of solvation -32.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds