Wall clock time and date at job start Tue Mar 31 2020 18:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50694 * 109.46970 * 2 1 4 4 N 1.30941 * 122.90542 * 270.01762 * 3 2 1 5 5 C 1.29429 * 117.36702 * 179.97438 * 4 3 2 6 6 S 1.70947 * 110.38873 * 0.02562 * 5 4 3 7 7 C 1.35659 * 122.90704 * 89.99821 * 3 2 1 8 8 C 1.46683 * 126.12986 * 359.75603 * 7 3 2 9 9 O 1.21696 * 119.99873 * 41.08363 * 8 7 3 10 10 N 1.34776 * 120.00497 * 221.08070 * 8 7 3 11 11 C 1.46595 * 119.74883 * 5.45860 * 10 8 7 12 12 C 1.53893 * 110.70505 * 132.25301 * 11 10 8 13 13 C 1.51973 * 107.29052 * 51.81604 * 12 11 10 14 14 H 1.08998 * 111.01683 * 56.51913 * 13 12 11 15 15 C 1.53700 * 115.00320 * 184.55543 * 13 12 11 16 16 C 1.55299 * 101.81432 * 153.46979 * 15 13 12 17 17 N 1.48166 * 107.04123 * 337.54960 * 16 15 13 18 18 C 1.36931 * 126.39633 * 175.03560 * 17 16 15 19 19 H 1.08005 * 119.99606 * 179.97438 * 18 17 16 20 20 C 1.38804 * 120.00498 * 359.95580 * 18 17 16 21 21 N 1.31626 * 120.00158 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00292 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46909 * 60.00716 * 22 20 18 24 24 H 1.48502 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47294 * 300.00365 * 22 20 18 26 26 C 1.45506 * 107.20140 * 355.00152 * 17 16 15 27 27 H 1.09009 * 109.56958 * 273.37402 * 26 17 16 28 28 C 1.47791 * 119.75593 * 185.18944 * 10 8 7 29 29 H 1.08994 * 109.47083 * 300.00773 * 1 2 3 30 30 H 1.09000 * 109.46808 * 60.00177 * 1 2 3 31 31 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46972 * 239.99770 * 2 1 3 33 33 H 1.09000 * 109.46808 * 119.99823 * 2 1 3 34 34 H 1.07998 * 124.80513 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.23234 * 252.56538 * 11 10 8 36 36 H 1.08999 * 109.23317 * 11.98402 * 11 10 8 37 37 H 1.08997 * 109.89170 * 171.26295 * 12 11 10 38 38 H 1.09000 * 109.88990 * 292.28767 * 12 11 10 39 39 H 1.08997 * 110.96276 * 271.59374 * 15 13 12 40 40 H 1.09001 * 110.96170 * 35.33838 * 15 13 12 41 41 H 1.09001 * 109.92283 * 218.21174 * 16 15 13 42 42 H 1.08998 * 110.09335 * 96.99370 * 16 15 13 43 43 H 0.96996 * 120.00385 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.06400 * 350.47218 * 28 10 8 45 45 H 1.09001 * 110.06460 * 112.03924 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2691 2.0916 -1.0993 5 6 2.6981 3.3063 -0.9744 6 16 2.8447 3.7192 0.6779 7 6 2.2780 2.1156 1.1389 8 6 2.0983 1.6226 2.5087 9 8 2.4268 0.4861 2.7943 10 7 1.5694 2.4281 3.4510 11 6 1.0653 3.7526 3.0762 12 6 -0.3319 3.9925 3.6752 13 6 -0.2426 3.6955 5.1629 14 1 0.5276 4.3035 5.6374 15 6 -1.5766 3.7740 5.9223 16 6 -1.3237 2.8063 7.1103 17 7 -0.2392 1.8853 6.6968 18 6 0.3609 0.9341 7.4779 19 1 1.1456 0.3154 7.0681 20 6 -0.0389 0.7654 8.7964 21 7 -0.9953 1.5193 9.2958 22 14 0.7794 -0.5327 9.8617 23 1 2.2331 -0.2465 9.9616 24 1 0.1761 -0.5119 11.2185 25 1 0.5792 -1.8718 9.2519 26 6 0.0683 2.1798 5.3054 27 1 -0.5956 1.6089 4.6560 28 6 1.4967 1.9671 4.8533 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9312 3.9654 -1.7976 35 1 1.7502 4.5154 3.4463 36 1 1.0058 3.8200 1.9900 37 1 -0.6282 5.0300 3.5213 38 1 -1.0560 3.3267 3.2056 39 1 -1.7638 4.7872 6.2779 40 1 -2.4002 3.4220 5.3011 41 1 -2.2293 2.2397 7.3271 42 1 -1.0173 3.3683 7.9925 43 1 -1.2749 1.4012 10.2170 44 1 1.7529 0.9093 4.9130 45 1 2.1737 2.5528 5.4751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042087264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:49 Heat of formation + Delta-G solvation = 22.871801 kcal Electronic energy + Delta-G solvation = -27692.229757 eV Core-core repulsion = 24029.520689 eV Total energy + Delta-G solvation = -3662.709067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82496 -40.84597 -39.52646 -36.95120 -34.71216 -34.55690 -32.97475 -31.90456 -30.45427 -29.95093 -27.23047 -26.56755 -25.31731 -24.27901 -23.65714 -22.37232 -21.82833 -21.03794 -19.54891 -19.47231 -18.61281 -17.82015 -17.35353 -16.90764 -16.52820 -16.06956 -15.82235 -15.59918 -15.51495 -15.24005 -15.09906 -14.78932 -14.63535 -14.39662 -14.04556 -13.88036 -13.63490 -13.41801 -13.15980 -13.09268 -13.00019 -12.74654 -12.57773 -12.30426 -12.19150 -12.04551 -11.97605 -11.77063 -11.56571 -11.48582 -11.26433 -11.06234 -10.73360 -10.71965 -10.38584 -9.88972 -9.76101 -8.92252 -7.87179 -5.22275 -0.72234 0.10540 0.55914 1.39525 1.43350 1.45896 1.52037 1.68729 1.98760 2.48400 3.13195 3.30908 3.36202 3.50482 3.73817 3.89492 3.92208 3.95863 4.06715 4.22071 4.22815 4.28319 4.30394 4.39598 4.46260 4.54391 4.58568 4.65868 4.77727 4.84267 4.86758 4.92134 4.96227 5.06605 5.10611 5.12686 5.20417 5.25545 5.32509 5.46629 5.55729 5.65603 5.77934 6.17877 6.20206 6.58538 6.90959 7.07129 7.75257 8.42082 9.23440 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016790 B = 0.003505 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.289927 B = 7986.112022 C = 8685.110621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C 0.137 3.863 4 N -0.496 5.496 5 C 0.040 3.960 6 S 0.236 5.764 7 C -0.323 4.323 8 C 0.590 3.410 9 O -0.568 6.568 10 N -0.596 5.596 11 C 0.094 3.906 12 C -0.108 4.108 13 C -0.095 4.095 14 H 0.082 0.918 15 C -0.121 4.121 16 C 0.180 3.820 17 N -0.612 5.612 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.059 4.059 21 N -0.947 5.947 22 Si 0.971 3.029 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.149 3.851 27 H 0.004 0.996 28 C 0.131 3.869 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.249 0.751 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.068 0.932 41 H -0.002 1.002 42 H 0.025 0.975 43 H 0.248 0.752 44 H 0.060 0.940 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.006 11.654 -22.676 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 C -0.002 4.002 4 N -0.210 5.210 5 C -0.255 4.255 6 S 0.492 5.508 7 C -0.447 4.447 8 C 0.378 3.622 9 O -0.449 6.449 10 N -0.328 5.328 11 C -0.028 4.028 12 C -0.146 4.146 13 C -0.115 4.115 14 H 0.100 0.900 15 C -0.159 4.159 16 C 0.056 3.944 17 N -0.337 5.337 18 C -0.369 4.369 19 H 0.093 0.907 20 C -0.252 4.252 21 N -0.596 5.596 22 Si 0.799 3.201 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.041 3.959 27 H 0.022 0.978 28 C 0.007 3.993 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.265 0.735 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.016 0.984 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.440 11.767 -22.327 25.818 hybrid contribution -0.073 -2.138 1.290 2.497 sum 5.366 9.629 -21.038 23.751 Atomic orbital electron populations 1.21612 0.93198 1.02911 1.01471 1.20372 0.97172 0.89158 1.04035 1.20653 0.95919 0.98101 0.85480 1.66160 1.16813 1.07475 1.30560 1.29566 0.98299 0.95425 1.02188 1.83806 1.57610 1.07519 1.01843 1.25268 1.19891 1.02050 0.97506 1.17205 0.77166 0.84378 0.83490 1.90786 1.52935 1.19848 1.81306 1.48168 1.59351 1.17920 1.07386 1.22308 0.96621 0.82474 1.01435 1.21782 0.95694 1.04247 0.92868 1.22195 0.97980 0.94977 0.96333 0.90015 1.22584 0.96815 0.99803 0.96658 1.21375 0.89004 0.89699 0.94336 1.44421 1.41464 1.39965 1.07880 1.19270 1.14526 1.10359 0.92703 0.90735 1.25529 0.99691 1.01697 0.98323 1.70135 1.32387 1.42616 1.14455 0.85275 0.78104 0.78940 0.77793 1.20221 1.21614 1.20933 1.21009 0.93365 0.95699 0.85859 0.97819 1.21283 0.97963 0.99965 0.80046 0.94527 0.91341 0.90744 0.88728 0.90708 0.73496 0.88777 0.88261 0.86303 0.91905 0.89267 0.91325 0.98355 0.95648 0.94320 0.92129 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.90 71.99 0.71 -2.35 16 2 C -0.07 -1.71 6.13 29.85 0.18 -1.53 16 3 C 0.14 3.38 6.04 42.09 0.25 3.63 16 4 N -0.50 -10.11 10.50 -190.41 -2.00 -12.11 16 5 C 0.04 0.49 12.22 130.60 1.60 2.08 16 6 S 0.24 3.32 20.29 -56.49 -1.15 2.17 16 7 C -0.32 -8.11 5.31 23.88 0.13 -7.98 16 8 C 0.59 19.37 7.29 86.45 0.63 20.00 16 9 O -0.57 -23.44 14.58 -4.34 -0.06 -23.51 16 10 N -0.60 -18.22 3.02 -824.38 -2.49 -20.71 16 11 C 0.09 1.95 5.37 86.66 0.47 2.42 16 12 C -0.11 -2.32 5.72 30.56 0.17 -2.15 16 13 C -0.10 -2.96 2.62 -10.08 -0.03 -2.99 16 14 H 0.08 2.54 8.13 -2.39 -0.02 2.52 16 15 C -0.12 -4.11 6.54 31.62 0.21 -3.90 16 16 C 0.18 8.82 5.46 86.85 0.47 9.29 16 17 N -0.61 -31.72 3.35 -670.10 -2.24 -33.97 16 18 C -0.24 -13.75 9.88 84.03 0.83 -12.92 16 19 H 0.07 4.22 7.41 -2.91 -0.02 4.20 16 20 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 21 N -0.95 -57.35 10.43 21.65 0.23 -57.13 16 22 Si 0.97 47.13 29.55 68.60 2.03 49.15 16 23 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 25 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 26 C 0.15 6.14 2.74 45.45 0.12 6.27 16 27 H 0.00 0.20 7.93 -2.38 -0.02 0.18 16 28 C 0.13 5.05 5.67 85.58 0.49 5.53 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.31 6.18 -2.39 -0.01 2.29 16 34 H 0.25 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.69 4.75 -8.80 -0.04 1.65 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.48 7.99 -2.39 -0.02 1.46 16 39 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 41 H 0.00 -0.10 7.77 -2.39 -0.02 -0.12 16 42 H 0.03 1.38 7.19 -2.39 -0.02 1.36 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.06 2.74 6.73 -2.39 -0.02 2.72 16 45 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -76.75 363.13 1.98 -74.77 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.96 Total: 8.86 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.70 Total: 12.46 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -6.50 Total: -123.92 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.15 Total: 2.17 kcal Total: -76.75 1.98 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042087264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.644 kcal (2) G-P(sol) polarization free energy of solvation -76.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds