Wall clock time and date at job start Tue Mar 31 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47433 * 2 1 4 4 N 1.30946 * 122.90704 * 270.19539 * 3 2 1 5 5 C 1.29430 * 117.36513 * 180.34662 * 4 3 2 6 6 S 1.70955 * 110.39010 * 359.70277 * 5 4 3 7 7 C 1.35665 * 122.90650 * 89.99615 * 3 2 1 8 8 C 1.46680 * 126.12638 * 359.96724 * 7 3 2 9 9 O 1.21689 * 120.00253 * 323.12688 * 8 7 3 10 10 N 1.34773 * 119.99917 * 143.12010 * 8 7 3 11 11 C 1.45228 * 119.34182 * 174.11079 * 10 8 7 12 12 C 1.50611 * 112.84028 * 135.99905 * 11 10 8 13 13 C 1.48866 * 117.90089 * 27.68742 * 12 11 10 14 14 H 1.09004 * 106.75931 * 217.69364 * 13 12 11 15 15 C 1.55056 * 111.54224 * 101.51402 * 13 12 11 16 16 C 1.55061 * 101.27306 * 194.53076 * 15 13 12 17 17 N 1.47561 * 104.84729 * 35.96680 * 16 15 13 18 18 C 1.36939 * 125.85343 * 156.09258 * 17 16 15 19 19 H 1.08000 * 119.99511 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00074 * 0.03036 * 18 17 16 21 21 N 1.31616 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99740 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47567 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47048 * 119.99782 * 22 20 18 25 25 H 1.48499 * 109.47062 * 239.99622 * 22 20 18 26 26 C 1.47621 * 108.28460 * 336.11814 * 17 16 15 27 27 H 1.09004 * 108.09837 * 244.72608 * 26 17 16 28 28 C 1.44683 * 119.91443 * 354.50472 * 10 8 7 29 29 H 1.08995 * 109.46937 * 299.99670 * 1 2 3 30 30 H 1.09003 * 109.47031 * 60.00289 * 1 2 3 31 31 H 1.08996 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47216 * 239.99942 * 2 1 3 33 33 H 1.08998 * 109.47419 * 120.00544 * 2 1 3 34 34 H 1.08004 * 124.80460 * 179.72986 * 5 4 3 35 35 H 1.09000 * 108.81105 * 15.13485 * 11 10 8 36 36 H 1.09005 * 108.81136 * 256.86479 * 11 10 8 37 37 H 1.09000 * 107.75093 * 265.55416 * 12 11 10 38 38 H 1.08997 * 107.72336 * 149.79304 * 12 11 10 39 39 H 1.09000 * 111.07111 * 76.52092 * 15 13 12 40 40 H 1.08996 * 111.07463 * 312.54182 * 15 13 12 41 41 H 1.08999 * 110.36939 * 154.81265 * 16 15 13 42 42 H 1.09005 * 110.36699 * 277.02156 * 16 15 13 43 43 H 0.97004 * 119.99578 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.26120 * 108.00195 * 28 10 8 45 45 H 1.08994 * 108.17566 * 349.65849 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2660 2.0927 -1.0994 5 6 2.7025 3.3048 -0.9744 6 16 2.8532 3.7161 0.6781 7 6 2.2780 2.1156 1.1390 8 6 2.1023 1.6210 2.5087 9 8 1.1707 0.8849 2.7750 10 7 2.9728 1.9818 3.4722 11 6 2.7150 1.5907 4.8469 12 6 3.9439 1.0744 5.5481 13 6 5.2691 1.5749 5.0904 14 1 5.9591 0.7328 5.1448 15 6 5.8243 2.6673 6.0405 16 6 6.9602 3.2725 5.1758 17 7 6.4444 3.2346 3.7938 18 6 6.8503 4.0405 2.7638 19 1 6.4063 3.9311 1.7854 20 6 7.8324 4.9980 2.9773 21 7 8.3731 5.1316 4.1698 22 14 8.3865 6.0970 1.5720 23 1 7.6299 5.7482 0.3428 24 1 8.1322 7.5170 1.9242 25 1 9.8385 5.8990 1.3318 26 6 5.4154 2.1792 3.7122 27 1 5.7777 1.4046 3.0363 28 6 4.1451 2.7584 3.1317 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9377 3.9632 -1.7976 35 1 1.9531 0.8113 4.8536 36 1 2.3358 2.4546 5.3929 37 1 3.9483 -0.0116 5.4545 38 1 3.8464 1.3126 6.6072 39 1 6.2206 2.2265 6.9553 40 1 5.0632 3.4142 6.2661 41 1 7.1604 4.3004 5.4779 42 1 7.8644 2.6698 5.2615 43 1 9.0597 5.8005 4.3188 44 1 4.0207 3.7771 3.4989 45 1 4.2322 2.7840 2.0455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042087265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:53 Heat of formation + Delta-G solvation = 45.651460 kcal Electronic energy + Delta-G solvation = -27999.299587 eV Core-core repulsion = 24337.578320 eV Total energy + Delta-G solvation = -3661.721267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65614 -39.65212 -38.16819 -35.36207 -33.55830 -33.44095 -31.84735 -30.02724 -29.16949 -28.52159 -26.24571 -24.88094 -24.26222 -23.30293 -22.69915 -21.15834 -20.35809 -18.97969 -18.49904 -17.45385 -17.05925 -16.60499 -16.27301 -15.45495 -15.02251 -14.96883 -14.82233 -14.53299 -14.11940 -13.93789 -13.80389 -13.62777 -13.40846 -12.71771 -12.67460 -12.35294 -12.27516 -11.90955 -11.83757 -11.75373 -11.40992 -11.20197 -10.99519 -10.94980 -10.87086 -10.76643 -10.28880 -10.13632 -10.04966 -9.98787 -9.79599 -9.64208 -9.47621 -9.19221 -8.79135 -8.75392 -8.37186 -6.98294 -5.75768 -3.18458 0.33135 1.21405 1.62613 2.50653 2.98073 3.25944 3.32055 3.37259 3.40319 4.11204 4.35982 4.63050 4.90640 4.98199 4.99801 5.02692 5.18287 5.27297 5.38883 5.44005 5.45661 5.49144 5.52689 5.64023 5.74171 5.79222 5.92947 5.94189 5.99688 6.08182 6.12667 6.18821 6.21519 6.31627 6.32994 6.53067 6.54867 6.69974 6.76497 6.91383 7.42377 7.47049 7.53191 7.63135 7.75948 8.16648 8.24457 9.09993 9.70575 10.35518 11.28013 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.005063 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.099929 B = 5528.788215 C = 7519.671910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C 0.135 3.865 4 N -0.475 5.475 5 C 0.011 3.989 6 S 0.211 5.789 7 C -0.294 4.294 8 C 0.595 3.405 9 O -0.531 6.531 10 N -0.588 5.588 11 C 0.118 3.882 12 C -0.112 4.112 13 C -0.090 4.090 14 H 0.061 0.939 15 C -0.141 4.141 16 C 0.151 3.849 17 N -0.593 5.593 18 C -0.225 4.225 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.910 3.090 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.167 3.833 27 H 0.027 0.973 28 C 0.090 3.910 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.203 0.797 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.014 0.986 43 H 0.252 0.748 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -5.496 -2.622 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 C -0.004 4.004 4 N -0.189 5.189 5 C -0.283 4.283 6 S 0.468 5.532 7 C -0.418 4.418 8 C 0.381 3.619 9 O -0.410 6.410 10 N -0.319 5.319 11 C -0.004 4.004 12 C -0.151 4.151 13 C -0.110 4.110 14 H 0.080 0.920 15 C -0.180 4.180 16 C 0.026 3.974 17 N -0.317 5.317 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.059 3.941 27 H 0.044 0.956 28 C -0.036 4.036 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.219 0.781 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.123 0.877 42 H 0.032 0.968 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.891 -4.915 -2.550 13.117 hybrid contribution 0.417 -0.070 -0.886 0.982 sum -11.474 -4.985 -3.437 12.973 Atomic orbital electron populations 1.21657 0.93703 1.01928 1.02425 1.20160 0.96901 0.88446 1.03269 1.20567 0.96448 0.98225 0.85113 1.66099 1.15300 1.06282 1.31247 1.28805 1.01235 0.96412 1.01851 1.84624 1.55565 1.11711 1.01298 1.25478 1.17112 1.00116 0.99091 1.16797 0.82408 0.80191 0.82506 1.90767 1.32068 1.36584 1.81553 1.46971 1.23521 1.53903 1.07513 1.20674 0.98138 1.00796 0.80826 1.20415 0.93637 1.00594 1.00406 1.20448 0.95692 0.98797 0.96029 0.92006 1.23213 1.00151 0.97218 0.97420 1.21963 0.90896 1.02291 0.82251 1.44775 1.40912 1.38108 1.07953 1.19047 1.16727 1.10225 0.89336 0.90433 1.24766 0.98845 0.99539 0.97002 1.69820 1.30031 1.36752 1.19940 0.86079 0.78414 0.80428 0.81077 1.20412 1.21600 1.21684 1.19911 0.88699 0.91545 0.93988 0.95574 1.21922 0.85216 0.95552 1.00924 0.91346 0.93005 0.92208 0.90322 0.89849 0.78051 0.89110 0.92209 0.92427 0.90778 0.92247 0.92235 0.87655 0.96788 0.93678 0.90568 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.81 37.16 0.36 -1.31 16 2 C -0.05 -0.63 5.67 -27.89 -0.16 -0.79 16 3 C 0.14 2.02 6.04 -83.89 -0.51 1.51 16 4 N -0.48 -6.87 10.50 -11.53 -0.12 -6.99 16 5 C 0.01 0.14 12.22 51.75 0.63 0.77 16 6 S 0.21 2.89 19.97 -107.50 -2.15 0.74 16 7 C -0.29 -4.55 5.46 -37.10 -0.20 -4.76 16 8 C 0.59 9.77 7.12 -12.85 -0.09 9.68 16 9 O -0.53 -9.27 13.91 5.20 0.07 -9.20 16 10 N -0.59 -9.42 3.03 -180.20 -0.55 -9.96 16 11 C 0.12 1.66 6.36 -5.92 -0.04 1.62 16 12 C -0.11 -1.51 5.55 -29.95 -0.17 -1.68 16 13 C -0.09 -1.50 2.63 -92.47 -0.24 -1.75 16 14 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 15 C -0.14 -2.49 6.24 -24.56 -0.15 -2.64 16 16 C 0.15 3.43 5.91 -2.37 -0.01 3.42 16 17 N -0.59 -13.95 3.16 -164.76 -0.52 -14.47 16 18 C -0.23 -5.75 9.77 -15.06 -0.15 -5.90 16 19 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -25.32 10.12 55.49 0.56 -24.75 16 22 Si 0.91 20.83 29.55 -169.99 -5.02 15.81 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.17 3.27 3.29 -69.13 -0.23 3.04 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 28 C 0.09 1.59 4.53 -5.92 -0.03 1.56 16 29 H 0.07 0.93 7.08 -51.93 -0.37 0.57 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.16 7.12 -51.93 -0.37 0.79 16 34 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 35 H 0.09 1.25 6.87 -51.93 -0.36 0.89 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.07 0.87 7.65 -51.93 -0.40 0.47 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.11 2.71 5.91 -51.93 -0.31 2.40 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 44 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 45 H 0.08 1.36 4.29 -33.01 -0.14 1.22 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -29.34 360.20 -9.92 -39.26 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.55 Total: 1.60 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.07 Total: 2.54 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.63 Total: -56.18 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.15 Total: 0.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.34 -9.92 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042087265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.913 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds