Wall clock time and date at job start Tue Mar 31 2020 18:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47433 * 2 1 4 4 N 1.30946 * 122.90704 * 270.19539 * 3 2 1 5 5 C 1.29430 * 117.36513 * 180.34662 * 4 3 2 6 6 S 1.70955 * 110.39010 * 359.70277 * 5 4 3 7 7 C 1.35665 * 122.90650 * 89.99615 * 3 2 1 8 8 C 1.46680 * 126.12638 * 359.96724 * 7 3 2 9 9 O 1.21689 * 120.00253 * 323.12688 * 8 7 3 10 10 N 1.34773 * 119.99917 * 143.12010 * 8 7 3 11 11 C 1.45228 * 119.34182 * 174.11079 * 10 8 7 12 12 C 1.50611 * 112.84028 * 135.99905 * 11 10 8 13 13 C 1.48866 * 117.90089 * 27.68742 * 12 11 10 14 14 H 1.09004 * 106.75931 * 217.69364 * 13 12 11 15 15 C 1.55056 * 111.54224 * 101.51402 * 13 12 11 16 16 C 1.55061 * 101.27306 * 194.53076 * 15 13 12 17 17 N 1.47561 * 104.84729 * 35.96680 * 16 15 13 18 18 C 1.36939 * 125.85343 * 156.09258 * 17 16 15 19 19 H 1.08000 * 119.99511 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00074 * 0.03036 * 18 17 16 21 21 N 1.31616 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99740 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47567 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47048 * 119.99782 * 22 20 18 25 25 H 1.48499 * 109.47062 * 239.99622 * 22 20 18 26 26 C 1.47621 * 108.28460 * 336.11814 * 17 16 15 27 27 H 1.09004 * 108.09837 * 244.72608 * 26 17 16 28 28 C 1.44683 * 119.91443 * 354.50472 * 10 8 7 29 29 H 1.08995 * 109.46937 * 299.99670 * 1 2 3 30 30 H 1.09003 * 109.47031 * 60.00289 * 1 2 3 31 31 H 1.08996 * 109.46914 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47216 * 239.99942 * 2 1 3 33 33 H 1.08998 * 109.47419 * 120.00544 * 2 1 3 34 34 H 1.08004 * 124.80460 * 179.72986 * 5 4 3 35 35 H 1.09000 * 108.81105 * 15.13485 * 11 10 8 36 36 H 1.09005 * 108.81136 * 256.86479 * 11 10 8 37 37 H 1.09000 * 107.75093 * 265.55416 * 12 11 10 38 38 H 1.08997 * 107.72336 * 149.79304 * 12 11 10 39 39 H 1.09000 * 111.07111 * 76.52092 * 15 13 12 40 40 H 1.08996 * 111.07463 * 312.54182 * 15 13 12 41 41 H 1.08999 * 110.36939 * 154.81265 * 16 15 13 42 42 H 1.09005 * 110.36699 * 277.02156 * 16 15 13 43 43 H 0.97004 * 119.99578 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.26120 * 108.00195 * 28 10 8 45 45 H 1.08994 * 108.17566 * 349.65849 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2660 2.0927 -1.0994 5 6 2.7025 3.3048 -0.9744 6 16 2.8532 3.7161 0.6781 7 6 2.2780 2.1156 1.1390 8 6 2.1023 1.6210 2.5087 9 8 1.1707 0.8849 2.7750 10 7 2.9728 1.9818 3.4722 11 6 2.7150 1.5907 4.8469 12 6 3.9439 1.0744 5.5481 13 6 5.2691 1.5749 5.0904 14 1 5.9591 0.7328 5.1448 15 6 5.8243 2.6673 6.0405 16 6 6.9602 3.2725 5.1758 17 7 6.4444 3.2346 3.7938 18 6 6.8503 4.0405 2.7638 19 1 6.4063 3.9311 1.7854 20 6 7.8324 4.9980 2.9773 21 7 8.3731 5.1316 4.1698 22 14 8.3865 6.0970 1.5720 23 1 7.6299 5.7482 0.3428 24 1 8.1322 7.5170 1.9242 25 1 9.8385 5.8990 1.3318 26 6 5.4154 2.1792 3.7122 27 1 5.7777 1.4046 3.0363 28 6 4.1451 2.7584 3.1317 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9377 3.9632 -1.7976 35 1 1.9531 0.8113 4.8536 36 1 2.3358 2.4546 5.3929 37 1 3.9483 -0.0116 5.4545 38 1 3.8464 1.3126 6.6072 39 1 6.2206 2.2265 6.9553 40 1 5.0632 3.4142 6.2661 41 1 7.1604 4.3004 5.4779 42 1 7.8644 2.6698 5.2615 43 1 9.0597 5.8005 4.3188 44 1 4.0207 3.7771 3.4989 45 1 4.2322 2.7840 2.0455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042087265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:52 Heat of formation + Delta-G solvation = 28.825402 kcal Electronic energy + Delta-G solvation = -28000.029220 eV Core-core repulsion = 24337.578320 eV Total energy + Delta-G solvation = -3662.450900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.89471 -40.86111 -39.57253 -36.81811 -35.05472 -34.50640 -33.48083 -31.33253 -30.65340 -30.04829 -27.40182 -26.46928 -25.74644 -24.37451 -23.98401 -22.46425 -22.06421 -20.23183 -19.59997 -18.89494 -18.70589 -17.85217 -17.53793 -16.91246 -16.52592 -16.45943 -16.07427 -15.66940 -15.52990 -15.19209 -15.06962 -14.84570 -14.64159 -14.20241 -14.02908 -13.70894 -13.51144 -13.36472 -13.32962 -12.94052 -12.91683 -12.67776 -12.66694 -12.22918 -12.22005 -11.93710 -11.89318 -11.71238 -11.61121 -11.45664 -11.21575 -10.99858 -10.76801 -10.72289 -10.37496 -9.89570 -9.66276 -8.89475 -7.74386 -5.18851 -0.75547 0.12743 0.55794 1.36958 1.49021 1.50106 1.59209 1.76751 2.03739 2.50487 3.10288 3.35176 3.36128 3.59578 3.68918 3.81387 3.93374 4.00383 4.06149 4.09857 4.26732 4.36222 4.37995 4.41085 4.46012 4.56638 4.62454 4.70173 4.85216 4.88084 4.94786 4.97132 5.00952 5.09976 5.14821 5.17090 5.32996 5.33599 5.46914 5.49573 5.56732 5.68986 5.84414 6.17564 6.32404 6.53737 6.91144 7.12384 7.78534 8.43266 9.27919 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.005063 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.099929 B = 5528.788215 C = 7519.671910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C 0.134 3.866 4 N -0.493 5.493 5 C 0.032 3.968 6 S 0.202 5.798 7 C -0.322 4.322 8 C 0.595 3.405 9 O -0.544 6.544 10 N -0.589 5.589 11 C 0.114 3.886 12 C -0.107 4.107 13 C -0.082 4.082 14 H 0.061 0.939 15 C -0.124 4.124 16 C 0.151 3.849 17 N -0.610 5.610 18 C -0.227 4.227 19 H 0.084 0.916 20 C -0.061 4.061 21 N -0.947 5.947 22 Si 0.967 3.033 23 H -0.261 1.261 24 H -0.291 1.291 25 H -0.299 1.299 26 C 0.163 3.837 27 H 0.010 0.990 28 C 0.108 3.892 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.074 0.926 42 H -0.014 1.014 43 H 0.245 0.755 44 H 0.062 0.938 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 -6.094 -3.349 15.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.089 4.089 3 C -0.005 4.005 4 N -0.207 5.207 5 C -0.262 4.262 6 S 0.459 5.541 7 C -0.446 4.446 8 C 0.382 3.618 9 O -0.424 6.424 10 N -0.320 5.320 11 C -0.008 4.008 12 C -0.145 4.145 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.163 4.163 16 C 0.026 3.974 17 N -0.335 5.335 18 C -0.355 4.355 19 H 0.101 0.899 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.796 3.204 23 H -0.185 1.185 24 H -0.218 1.218 25 H -0.226 1.226 26 C 0.056 3.944 27 H 0.028 0.972 28 C -0.018 4.018 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.258 0.742 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.004 0.996 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.401 -5.540 -3.275 14.866 hybrid contribution 0.876 0.088 -0.733 1.146 sum -12.525 -5.452 -4.008 14.236 Atomic orbital electron populations 1.21583 0.92760 1.02956 1.01576 1.20227 0.97641 0.87716 1.03341 1.20881 0.95614 0.98877 0.85149 1.66169 1.16503 1.07087 1.30957 1.29477 0.98675 0.96002 1.02023 1.84629 1.55864 1.11053 1.02560 1.25464 1.19076 1.01189 0.98897 1.16912 0.82120 0.79862 0.82891 1.90751 1.32494 1.37217 1.81922 1.46974 1.22832 1.53734 1.08434 1.20867 0.98618 1.01511 0.79834 1.20376 0.91258 1.01273 1.01622 1.20431 0.97864 0.98094 0.93780 0.92025 1.23072 0.98192 0.97395 0.97604 1.21768 0.92045 1.00338 0.83272 1.45010 1.41884 1.38695 1.07919 1.19377 1.16111 1.09914 0.90146 0.89861 1.25509 0.99557 1.01225 0.99068 1.70058 1.30598 1.37373 1.21621 0.85170 0.77395 0.78499 0.79355 1.18458 1.21821 1.22624 1.20051 0.88456 0.90160 0.95776 0.97243 1.21484 0.84988 0.94694 1.00611 0.93252 0.92637 0.90283 0.89092 0.90829 0.74247 0.88506 0.91138 0.90962 0.88075 0.89596 0.91627 0.90842 0.99617 0.94489 0.91992 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.81 71.98 0.71 -2.26 16 2 C -0.05 -1.25 5.67 29.85 0.17 -1.08 16 3 C 0.13 3.84 6.04 42.09 0.25 4.09 16 4 N -0.49 -13.32 10.50 -190.40 -2.00 -15.32 16 5 C 0.03 0.72 12.22 130.60 1.60 2.32 16 6 S 0.20 5.30 19.97 -56.49 -1.13 4.17 16 7 C -0.32 -9.74 5.46 23.88 0.13 -9.61 16 8 C 0.59 19.07 7.12 86.45 0.62 19.69 16 9 O -0.54 -18.52 13.91 -4.31 -0.06 -18.58 16 10 N -0.59 -18.20 3.03 -842.27 -2.55 -20.75 16 11 C 0.11 2.93 6.36 85.84 0.55 3.47 16 12 C -0.11 -2.56 5.55 28.51 0.16 -2.41 16 13 C -0.08 -2.61 2.63 -11.99 -0.03 -2.64 16 14 H 0.06 1.96 8.10 -2.38 -0.02 1.94 16 15 C -0.12 -4.21 6.24 32.00 0.20 -4.01 16 16 C 0.15 7.02 5.91 86.88 0.51 7.53 16 17 N -0.61 -29.16 3.16 -675.17 -2.13 -31.29 16 18 C -0.23 -11.72 9.77 84.03 0.82 -10.90 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 21 N -0.95 -53.94 10.12 21.65 0.22 -53.73 16 22 Si 0.97 43.12 29.55 68.60 2.03 45.15 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 24 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 C 0.16 6.34 3.29 43.60 0.14 6.49 16 27 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 28 C 0.11 3.79 4.53 86.13 0.39 4.18 16 29 H 0.05 1.31 7.08 -2.39 -0.02 1.29 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.07 1.99 7.12 -2.39 -0.02 1.97 16 34 H 0.24 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.10 2.43 6.87 -2.39 -0.02 2.41 16 36 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.07 1.57 8.13 -2.39 -0.02 1.55 16 38 H 0.10 1.95 7.65 -2.39 -0.02 1.93 16 39 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 3.92 5.91 -2.39 -0.01 3.91 16 42 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 43 H 0.25 13.69 8.31 -92.71 -0.77 12.91 16 44 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 45 H 0.07 2.63 4.29 -14.42 -0.06 2.56 16 Total: -1.00 -64.81 360.20 2.00 -62.81 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.95 Total: 15.45 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 6.68 Total: 12.08 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -6.46 Total: -121.09 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.06 Total: -18.58 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.13 Total: 4.17 kcal Total: -64.81 2.00 -62.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042087265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.635 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds