Wall clock time and date at job start Tue Mar 31 2020 18:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47127 * 2 1 4 4 N 1.29427 * 124.81029 * 90.01776 * 3 2 1 5 5 C 1.30933 * 117.36741 * 179.97438 * 4 3 2 6 6 C 1.35664 * 114.19009 * 0.27567 * 5 4 3 7 7 C 1.46687 * 126.12981 * 179.71163 * 6 5 4 8 8 O 1.21690 * 119.99576 * 316.31483 * 7 6 5 9 9 N 1.34770 * 120.00186 * 136.31687 * 7 6 5 10 10 C 1.47154 * 121.21602 * 182.78299 * 9 7 6 11 11 C 1.53336 * 107.71631 * 122.68592 * 10 9 7 12 12 C 1.53093 * 110.49922 * 57.57548 * 11 10 9 13 13 H 1.08997 * 113.06351 * 70.86225 * 12 11 10 14 14 C 1.56020 * 106.39646 * 195.29197 * 12 11 10 15 15 C 1.54502 * 102.61565 * 78.37868 * 14 12 11 16 16 N 1.47429 * 107.14635 * 22.84571 * 15 14 12 17 17 C 1.36942 * 126.06379 * 181.59145 * 16 15 14 18 18 H 1.07989 * 120.00285 * 187.84024 * 17 16 15 19 19 C 1.38817 * 119.99362 * 7.83928 * 17 16 15 20 20 N 1.31620 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46924 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47164 * 119.99996 * 21 19 17 24 24 H 1.48501 * 109.46978 * 240.00457 * 21 19 17 25 25 C 1.46469 * 107.88215 * 1.62682 * 16 15 14 26 26 H 1.08996 * 108.42523 * 89.23466 * 25 16 15 27 27 C 1.46762 * 121.21685 * 3.05762 * 9 7 6 28 28 S 1.70952 * 124.80017 * 269.98066 * 3 2 1 29 29 H 1.09003 * 109.47127 * 60.00544 * 1 2 3 30 30 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47617 * 300.00560 * 1 2 3 32 32 H 1.08999 * 109.47617 * 239.99440 * 2 1 3 33 33 H 1.09003 * 109.47127 * 119.99456 * 2 1 3 34 34 H 1.08001 * 122.90988 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.76046 * 242.33536 * 10 9 7 36 36 H 1.08999 * 109.75651 * 3.09159 * 10 9 7 37 37 H 1.08994 * 109.39699 * 297.24739 * 11 10 9 38 38 H 1.09000 * 109.16018 * 177.74943 * 11 10 9 39 39 H 1.09002 * 110.78213 * 320.09885 * 14 12 11 40 40 H 1.09000 * 110.78384 * 196.66422 * 14 12 11 41 41 H 1.08997 * 109.90335 * 263.46412 * 15 14 12 42 42 H 1.08998 * 109.90271 * 142.22830 * 15 14 12 43 43 H 0.96996 * 120.00243 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.22327 * 352.84027 * 27 9 7 45 45 H 1.09004 * 109.22233 * 112.23602 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1173 1.0627 5 6 2.7121 3.3412 0.8930 6 6 2.8368 3.7117 -0.4060 7 6 3.2915 5.0186 -0.8928 8 8 2.8786 6.0386 -0.3733 9 7 4.1665 5.0897 -1.9154 10 6 4.6869 6.3834 -2.3854 11 6 6.2163 6.3345 -2.2878 12 6 6.7688 5.1665 -3.1089 13 1 6.6836 5.3225 -4.1843 14 6 8.2427 4.9579 -2.6417 15 6 8.0696 4.1960 -1.3088 16 7 6.7497 3.5406 -1.3511 17 6 6.1910 2.7879 -0.3527 18 1 5.2735 2.2476 -0.5328 19 6 6.8043 2.7195 0.8907 20 7 7.9223 3.3784 1.1104 21 14 6.0427 1.6922 2.2524 22 1 4.7975 1.0546 1.7540 23 1 7.0021 0.6402 2.6744 24 1 5.7232 2.5645 3.4109 25 6 6.1420 3.8366 -2.6505 26 1 6.4450 3.0635 -3.3566 27 6 4.6307 3.8801 -2.6047 28 16 2.3579 2.3405 -1.4038 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9458 4.0003 1.7161 35 1 4.3859 6.5478 -3.4201 36 1 4.3011 7.1860 -1.7568 37 1 6.5088 6.2110 -1.2451 38 1 6.6292 7.2686 -2.6686 39 1 8.7359 5.9162 -2.4782 40 1 8.7954 4.3555 -3.3626 41 1 8.1101 4.8953 -0.4737 42 1 8.8534 3.4456 -1.2058 43 1 8.3510 3.3303 1.9791 44 1 4.2622 3.0014 -2.0752 45 1 4.2410 3.8752 -3.6227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042371291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:05 Heat of formation + Delta-G solvation = 42.637944 kcal Electronic energy + Delta-G solvation = -28768.427851 eV Core-core repulsion = 25106.575908 eV Total energy + Delta-G solvation = -3661.851943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16862 -39.29533 -37.98590 -34.87623 -33.99763 -33.06867 -31.39984 -29.80462 -28.95679 -28.38106 -25.98413 -24.62553 -23.99872 -23.07330 -22.43302 -20.95172 -20.02795 -19.26093 -18.26039 -17.97441 -16.73921 -16.31693 -15.81455 -15.23415 -15.00079 -14.67843 -14.43885 -14.17358 -14.08106 -13.92588 -13.70262 -13.42872 -13.10572 -12.72218 -12.62433 -12.30110 -12.03346 -11.79255 -11.68974 -11.50718 -11.33589 -11.26720 -11.22470 -10.92193 -10.81274 -10.75028 -10.28357 -10.02507 -9.88692 -9.73650 -9.67431 -9.56095 -9.35728 -8.87448 -8.61020 -8.54294 -8.20657 -6.82603 -5.71814 -3.06917 0.65853 1.41928 1.81165 2.90233 3.17239 3.40341 3.50031 3.53955 3.62758 4.23611 4.49201 4.88158 4.93090 4.99707 5.12763 5.18281 5.26473 5.33320 5.47229 5.54983 5.58976 5.64726 5.68463 5.70644 5.73773 5.76834 5.88224 5.92076 5.94878 6.05413 6.10751 6.19438 6.25135 6.33303 6.40978 6.52831 6.60838 6.63260 6.91679 6.99466 7.47361 7.62912 7.72254 7.80903 7.96259 8.24087 8.46025 9.18314 9.81123 10.47646 11.38344 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.006402 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.101010 B = 4372.267524 C = 5639.333142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.046 3.954 4 N -0.468 5.468 5 C 0.116 3.884 6 C -0.259 4.259 7 C 0.610 3.390 8 O -0.542 6.542 9 N -0.584 5.584 10 C 0.118 3.882 11 C -0.121 4.121 12 C -0.102 4.102 13 H 0.076 0.924 14 C -0.143 4.143 15 C 0.174 3.826 16 N -0.588 5.588 17 C -0.219 4.219 18 H 0.073 0.927 19 C 0.001 3.999 20 N -0.916 5.916 21 Si 0.888 3.112 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.290 1.290 25 C 0.155 3.845 26 H 0.028 0.972 27 C 0.096 3.904 28 S 0.159 5.841 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.250 0.750 44 H 0.092 0.908 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 -1.748 -9.946 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.090 4.090 3 C -0.229 4.229 4 N -0.182 5.182 5 C -0.039 4.039 6 C -0.382 4.382 7 C 0.396 3.604 8 O -0.421 6.421 9 N -0.315 5.315 10 C -0.004 4.004 11 C -0.160 4.160 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.181 4.181 15 C 0.049 3.951 16 N -0.313 5.313 17 C -0.347 4.347 18 H 0.090 0.910 19 C -0.196 4.196 20 N -0.564 5.564 21 Si 0.719 3.281 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.217 1.217 25 C 0.046 3.954 26 H 0.045 0.955 27 C -0.029 4.029 28 S 0.415 5.585 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.195 0.805 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.862 -1.750 -10.000 14.154 hybrid contribution 0.288 -0.063 1.620 1.647 sum -9.574 -1.813 -8.380 12.852 Atomic orbital electron populations 1.21764 0.93587 1.02343 1.02651 1.20236 0.96491 0.87753 1.04482 1.27368 1.02098 1.01871 0.91583 1.66107 1.14898 1.05897 1.31273 1.21863 0.95598 0.91303 0.95169 1.25428 1.15574 0.99700 0.97543 1.16634 0.78393 0.86363 0.79003 1.90776 1.58472 1.35161 1.57728 1.47666 1.42783 1.08126 1.32900 1.21667 0.94447 0.85349 0.98968 1.21915 0.93933 0.97431 1.02676 1.22400 0.96615 0.95511 0.97673 0.90589 1.23145 0.95020 1.00076 0.99857 1.21285 0.86882 0.94841 0.92045 1.44261 1.15480 1.59050 1.12513 1.18820 1.06097 1.20485 0.89312 0.90973 1.24727 0.97597 1.00103 0.97201 1.69934 1.18703 1.45362 1.22357 0.86363 0.79008 0.79850 0.82929 1.18942 1.22136 1.21707 1.20691 0.90161 0.94182 0.90333 0.95462 1.21931 0.97192 0.87805 0.95978 1.83659 1.58430 1.04462 1.11929 0.92430 0.91510 0.91931 0.89572 0.88693 0.80477 0.91779 0.89371 0.89892 0.91933 0.92191 0.92805 0.92279 0.95141 0.93909 0.89019 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.89 37.15 0.37 -0.99 16 2 C -0.05 -0.57 6.51 -27.89 -0.18 -0.75 16 3 C 0.05 0.73 6.64 -13.29 -0.09 0.64 16 4 N -0.47 -8.75 10.51 -11.50 -0.12 -8.87 16 5 C 0.12 2.29 11.30 -18.86 -0.21 2.07 16 6 C -0.26 -4.91 5.30 -37.09 -0.20 -5.10 16 7 C 0.61 12.29 7.59 -12.85 -0.10 12.20 16 8 O -0.54 -12.10 16.56 5.20 0.09 -12.01 16 9 N -0.58 -10.58 2.96 -175.32 -0.52 -11.10 16 10 C 0.12 1.87 6.47 -3.51 -0.02 1.85 16 11 C -0.12 -1.98 5.06 -26.51 -0.13 -2.12 16 12 C -0.10 -1.65 3.68 -88.43 -0.33 -1.98 16 13 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 14 C -0.14 -2.52 6.33 -24.33 -0.15 -2.67 16 15 C 0.17 4.03 4.67 -2.75 -0.01 4.02 16 16 N -0.59 -13.82 3.20 -164.43 -0.53 -14.34 16 17 C -0.22 -5.69 9.62 -15.05 -0.14 -5.83 16 18 H 0.07 1.84 6.40 -52.49 -0.34 1.50 16 19 C 0.00 0.01 5.48 -17.43 -0.10 -0.08 16 20 N -0.92 -26.64 10.44 55.49 0.58 -26.06 16 21 Si 0.89 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 25 C 0.16 2.92 2.97 -68.30 -0.20 2.71 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 C 0.10 1.64 5.15 -4.78 -0.02 1.61 16 28 S 0.16 2.40 20.01 -107.50 -2.15 0.24 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.18 3.51 8.06 -52.49 -0.42 3.09 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.47 7.06 -51.93 -0.37 1.11 16 37 H 0.08 1.71 6.85 -51.93 -0.36 1.36 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.56 6.61 -51.93 -0.34 1.22 16 42 H 0.03 0.78 7.95 -51.93 -0.41 0.37 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.09 1.66 2.62 -31.05 -0.08 1.58 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -32.19 362.61 -10.26 -42.45 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.52 Total: 1.26 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -1.53 Total: 5.57 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.59 Total: -60.38 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.15 Total: 0.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.19 -10.26 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042371291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.086 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds