Wall clock time and date at job start Tue Mar 31 2020 18:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47127 * 2 1 4 4 N 1.29427 * 124.81029 * 90.01776 * 3 2 1 5 5 C 1.30933 * 117.36741 * 179.97438 * 4 3 2 6 6 C 1.35664 * 114.19009 * 0.27567 * 5 4 3 7 7 C 1.46687 * 126.12981 * 179.71163 * 6 5 4 8 8 O 1.21690 * 119.99576 * 316.31483 * 7 6 5 9 9 N 1.34770 * 120.00186 * 136.31687 * 7 6 5 10 10 C 1.47154 * 121.21602 * 182.78299 * 9 7 6 11 11 C 1.53336 * 107.71631 * 122.68592 * 10 9 7 12 12 C 1.53093 * 110.49922 * 57.57548 * 11 10 9 13 13 H 1.08997 * 113.06351 * 70.86225 * 12 11 10 14 14 C 1.56020 * 106.39646 * 195.29197 * 12 11 10 15 15 C 1.54502 * 102.61565 * 78.37868 * 14 12 11 16 16 N 1.47429 * 107.14635 * 22.84571 * 15 14 12 17 17 C 1.36942 * 126.06379 * 181.59145 * 16 15 14 18 18 H 1.07989 * 120.00285 * 187.84024 * 17 16 15 19 19 C 1.38817 * 119.99362 * 7.83928 * 17 16 15 20 20 N 1.31620 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46924 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47164 * 119.99996 * 21 19 17 24 24 H 1.48501 * 109.46978 * 240.00457 * 21 19 17 25 25 C 1.46469 * 107.88215 * 1.62682 * 16 15 14 26 26 H 1.08996 * 108.42523 * 89.23466 * 25 16 15 27 27 C 1.46762 * 121.21685 * 3.05762 * 9 7 6 28 28 S 1.70952 * 124.80017 * 269.98066 * 3 2 1 29 29 H 1.09003 * 109.47127 * 60.00544 * 1 2 3 30 30 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47617 * 300.00560 * 1 2 3 32 32 H 1.08999 * 109.47617 * 239.99440 * 2 1 3 33 33 H 1.09003 * 109.47127 * 119.99456 * 2 1 3 34 34 H 1.08001 * 122.90988 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.76046 * 242.33536 * 10 9 7 36 36 H 1.08999 * 109.75651 * 3.09159 * 10 9 7 37 37 H 1.08994 * 109.39699 * 297.24739 * 11 10 9 38 38 H 1.09000 * 109.16018 * 177.74943 * 11 10 9 39 39 H 1.09002 * 110.78213 * 320.09885 * 14 12 11 40 40 H 1.09000 * 110.78384 * 196.66422 * 14 12 11 41 41 H 1.08997 * 109.90335 * 263.46412 * 15 14 12 42 42 H 1.08998 * 109.90271 * 142.22830 * 15 14 12 43 43 H 0.96996 * 120.00243 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.22327 * 352.84027 * 27 9 7 45 45 H 1.09004 * 109.22233 * 112.23602 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2789 2.1173 1.0627 5 6 2.7121 3.3412 0.8930 6 6 2.8368 3.7117 -0.4060 7 6 3.2915 5.0186 -0.8928 8 8 2.8786 6.0386 -0.3733 9 7 4.1665 5.0897 -1.9154 10 6 4.6869 6.3834 -2.3854 11 6 6.2163 6.3345 -2.2878 12 6 6.7688 5.1665 -3.1089 13 1 6.6836 5.3225 -4.1843 14 6 8.2427 4.9579 -2.6417 15 6 8.0696 4.1960 -1.3088 16 7 6.7497 3.5406 -1.3511 17 6 6.1910 2.7879 -0.3527 18 1 5.2735 2.2476 -0.5328 19 6 6.8043 2.7195 0.8907 20 7 7.9223 3.3784 1.1104 21 14 6.0427 1.6922 2.2524 22 1 4.7975 1.0546 1.7540 23 1 7.0021 0.6402 2.6744 24 1 5.7232 2.5645 3.4109 25 6 6.1420 3.8366 -2.6505 26 1 6.4450 3.0635 -3.3566 27 6 4.6307 3.8801 -2.6047 28 16 2.3579 2.3405 -1.4038 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.9458 4.0003 1.7161 35 1 4.3859 6.5478 -3.4201 36 1 4.3011 7.1860 -1.7568 37 1 6.5088 6.2110 -1.2451 38 1 6.6292 7.2686 -2.6686 39 1 8.7359 5.9162 -2.4782 40 1 8.7954 4.3555 -3.3626 41 1 8.1101 4.8953 -0.4737 42 1 8.8534 3.4456 -1.2058 43 1 8.3510 3.3303 1.9791 44 1 4.2622 3.0014 -2.0752 45 1 4.2410 3.8752 -3.6227 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042371291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:04 Heat of formation + Delta-G solvation = 21.974551 kcal Electronic energy + Delta-G solvation = -28769.323883 eV Core-core repulsion = 25106.575908 eV Total energy + Delta-G solvation = -3662.747975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61486 -40.67543 -39.53344 -36.46548 -35.08970 -34.71173 -33.04771 -31.23019 -30.51984 -29.95753 -27.23953 -26.37360 -25.52642 -24.38168 -23.61910 -22.33250 -21.77865 -20.65873 -19.62999 -19.40523 -18.47855 -17.75217 -17.37427 -16.81252 -16.43513 -16.23753 -15.84602 -15.67924 -15.47802 -15.31901 -15.01055 -14.78071 -14.50028 -14.17075 -14.05479 -13.76633 -13.32265 -13.18824 -13.08705 -13.01406 -12.75402 -12.71018 -12.58360 -12.55917 -12.37381 -12.08499 -12.01816 -11.77345 -11.61169 -11.32627 -11.15243 -11.08213 -10.70862 -10.68165 -10.24876 -9.83354 -9.59859 -8.79332 -7.83286 -5.15142 -0.67864 0.12582 0.49799 1.31818 1.40370 1.45042 1.47031 1.75110 2.21612 2.44855 3.06124 3.36062 3.48901 3.54689 3.86695 3.88759 3.99265 4.07039 4.20525 4.24249 4.30089 4.30628 4.38921 4.47928 4.56412 4.63435 4.66312 4.70897 4.83466 4.84683 4.98193 4.98613 4.99368 5.07835 5.14783 5.17132 5.26035 5.32767 5.48181 5.55269 5.65414 5.70697 5.86312 6.23715 6.27984 6.62947 6.98167 7.12406 7.82894 8.48202 9.26453 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.006402 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.101010 B = 4372.267524 C = 5639.333142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C 0.042 3.958 4 N -0.500 5.500 5 C 0.097 3.903 6 C -0.291 4.291 7 C 0.599 3.401 8 O -0.579 6.579 9 N -0.583 5.583 10 C 0.115 3.885 11 C -0.116 4.116 12 C -0.085 4.085 13 H 0.129 0.871 14 C -0.129 4.129 15 C 0.180 3.820 16 N -0.605 5.605 17 C -0.190 4.190 18 H 0.080 0.920 19 C -0.060 4.060 20 N -0.949 5.949 21 Si 0.930 3.070 22 H -0.250 1.250 23 H -0.301 1.301 24 H -0.311 1.311 25 C 0.141 3.859 26 H 0.046 0.954 27 C 0.093 3.907 28 S 0.237 5.763 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.027 0.973 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.014 0.986 42 H -0.009 1.009 43 H 0.238 0.762 44 H 0.079 0.921 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 -2.710 -14.597 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 C -0.233 4.233 4 N -0.214 5.214 5 C -0.059 4.059 6 C -0.415 4.415 7 C 0.386 3.614 8 O -0.461 6.461 9 N -0.313 5.313 10 C -0.006 4.006 11 C -0.154 4.154 12 C -0.104 4.104 13 H 0.147 0.853 14 C -0.167 4.167 15 C 0.055 3.945 16 N -0.330 5.330 17 C -0.320 4.320 18 H 0.098 0.902 19 C -0.253 4.253 20 N -0.600 5.600 21 Si 0.762 3.238 22 H -0.173 1.173 23 H -0.229 1.229 24 H -0.240 1.240 25 C 0.034 3.966 26 H 0.064 0.936 27 C -0.031 4.031 28 S 0.495 5.505 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.174 0.826 35 H 0.129 0.871 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.010 0.990 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.380 -2.736 -14.729 18.814 hybrid contribution 0.716 0.200 2.970 3.062 sum -10.664 -2.536 -11.759 16.076 Atomic orbital electron populations 1.21754 0.91644 1.04051 1.02347 1.20537 0.98054 0.85178 1.05628 1.28209 1.00233 1.03293 0.91553 1.66126 1.16585 1.05771 1.32951 1.21731 0.96827 0.92021 0.95341 1.25494 1.16525 1.01116 0.98402 1.16915 0.78821 0.86411 0.79211 1.90738 1.60004 1.36466 1.58921 1.47848 1.41827 1.09474 1.32188 1.21881 0.93768 0.83897 1.01043 1.21848 0.94519 0.99374 0.99683 1.22477 0.94265 0.93448 1.00254 0.85344 1.23008 0.96956 1.00096 0.96667 1.21020 0.85992 0.93309 0.94200 1.44504 1.16163 1.58540 1.13786 1.19072 1.04950 1.18558 0.89385 0.90207 1.25258 0.98582 1.02215 0.99206 1.70127 1.20276 1.47774 1.21787 0.85662 0.78770 0.78458 0.80926 1.17292 1.22903 1.23980 1.21058 0.91352 0.96272 0.87882 0.93615 1.22077 0.95951 0.86877 0.98209 1.83157 1.56527 1.01256 1.09585 0.91543 0.88808 0.93456 0.86804 0.89129 0.82635 0.87114 0.91039 0.95398 0.88614 0.90811 0.90770 0.96774 0.99041 0.95240 0.90372 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 71.98 0.71 -1.49 16 2 C -0.05 -1.09 6.51 29.85 0.19 -0.90 16 3 C 0.04 1.24 6.64 88.46 0.59 1.83 16 4 N -0.50 -18.81 10.51 -190.30 -2.00 -20.81 16 5 C 0.10 3.98 11.30 84.23 0.95 4.93 16 6 C -0.29 -11.02 5.30 23.88 0.13 -10.90 16 7 C 0.60 24.15 7.59 86.45 0.66 24.81 16 8 O -0.58 -26.65 16.56 -4.32 -0.07 -26.72 16 9 N -0.58 -19.87 2.96 -826.82 -2.45 -22.32 16 10 C 0.12 3.31 6.47 86.37 0.56 3.87 16 11 C -0.12 -3.47 5.06 30.74 0.16 -3.31 16 12 C -0.09 -2.35 3.68 -9.38 -0.03 -2.39 16 13 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 14 C -0.13 -4.21 6.33 32.15 0.20 -4.01 16 15 C 0.18 8.50 4.67 86.71 0.41 8.91 16 16 N -0.60 -28.21 3.20 -674.12 -2.15 -30.36 16 17 C -0.19 -9.97 9.62 84.03 0.81 -9.16 16 18 H 0.08 4.01 6.40 -2.92 -0.02 3.99 16 19 C -0.06 -3.45 5.48 84.86 0.47 -2.99 16 20 N -0.95 -58.52 10.44 21.65 0.23 -58.29 16 21 Si 0.93 48.26 29.55 68.60 2.03 50.29 16 22 H -0.25 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.30 -15.74 7.11 99.48 0.71 -15.03 16 24 H -0.31 -17.03 7.11 99.48 0.71 -16.33 16 25 C 0.14 4.79 2.97 44.77 0.13 4.92 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 C 0.09 2.80 5.15 85.76 0.44 3.24 16 28 S 0.24 6.54 20.01 -56.49 -1.13 5.41 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.16 6.76 8.06 -2.91 -0.02 6.74 16 35 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.07 2.32 7.06 -2.39 -0.02 2.30 16 37 H 0.03 1.14 6.85 -2.39 -0.02 1.13 16 38 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.22 7.97 -2.39 -0.02 2.20 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.01 0.79 6.61 -2.39 -0.02 0.77 16 42 H -0.01 -0.47 7.95 -2.39 -0.02 -0.49 16 43 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 44 H 0.08 2.58 2.62 -15.66 -0.04 2.54 16 45 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -77.65 362.61 1.78 -75.88 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.97 Total: 9.56 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.36 Total: 17.36 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -6.38 Total: -131.78 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.07 Total: -26.72 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Atomic # 16 Polarization: 6.54 SS G_CDS: -1.13 Total: 5.41 kcal Total: -77.65 1.78 -75.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042371291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.850 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds