Wall clock time and date at job start Tue Mar 31 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46762 * 2 1 4 4 N 1.30941 * 122.90187 * 269.95589 * 3 2 1 5 5 C 1.29428 * 117.36345 * 180.02562 * 4 3 2 6 6 S 1.70954 * 110.39006 * 359.72871 * 5 4 3 7 7 C 1.35662 * 122.90365 * 89.99788 * 3 2 1 8 8 C 1.46681 * 126.13285 * 359.96374 * 7 3 2 9 9 O 1.21683 * 120.00184 * 38.56122 * 8 7 3 10 10 N 1.34777 * 119.99751 * 218.56261 * 8 7 3 11 11 C 1.44791 * 120.17789 * 175.68365 * 10 8 7 12 12 C 1.51512 * 112.23115 * 264.53533 * 11 10 8 13 13 C 1.51318 * 113.24787 * 285.36898 * 12 11 10 14 14 H 1.08997 * 111.31222 * 186.10464 * 13 12 11 15 15 C 1.54724 * 106.48174 * 307.66417 * 13 12 11 16 16 C 1.54227 * 104.37769 * 89.12251 * 15 13 12 17 17 C 1.50873 * 105.27201 * 11.55897 * 16 15 13 18 18 H 1.08999 * 106.52531 * 121.73590 * 17 16 15 19 19 C 1.49819 * 120.18094 * 355.67221 * 10 8 7 20 20 N 1.48058 * 109.90921 * 7.87060 * 17 16 15 21 21 C 1.36943 * 127.84050 * 155.15819 * 20 17 16 22 22 H 1.07994 * 119.99914 * 180.02562 * 21 20 17 23 23 C 1.38804 * 119.99917 * 0.02874 * 21 20 17 24 24 N 1.31630 * 120.00190 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47077 * 60.00177 * 25 23 21 27 27 H 1.48496 * 109.47244 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47161 * 300.00338 * 25 23 21 29 29 H 1.09000 * 109.46841 * 60.00371 * 1 2 3 30 30 H 1.09002 * 109.46454 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47411 * 300.00165 * 1 2 3 32 32 H 1.09000 * 109.47411 * 239.99835 * 2 1 3 33 33 H 1.09000 * 109.46841 * 119.99629 * 2 1 3 34 34 H 1.08002 * 124.80237 * 180.02562 * 5 4 3 35 35 H 1.09003 * 108.92719 * 25.24286 * 11 10 8 36 36 H 1.09007 * 108.92630 * 143.91100 * 11 10 8 37 37 H 1.08999 * 108.72450 * 46.33769 * 12 11 10 38 38 H 1.08999 * 108.72532 * 164.51765 * 12 11 10 39 39 H 1.09004 * 110.45058 * 330.40068 * 15 13 12 40 40 H 1.08994 * 110.45221 * 207.84958 * 15 13 12 41 41 H 1.09000 * 110.28836 * 130.50756 * 16 15 13 42 42 H 1.09004 * 110.28563 * 252.61409 * 16 15 13 43 43 H 1.08997 * 109.54591 * 30.85029 * 19 10 8 44 44 H 1.08998 * 109.54321 * 270.57116 * 19 10 8 45 45 H 0.96993 * 119.99936 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2702 2.0912 -1.0994 5 6 2.6999 3.3057 -0.9745 6 16 2.8381 3.7216 0.6779 7 6 2.2779 2.1157 1.1390 8 6 2.1022 1.6212 2.5087 9 8 2.3919 0.4714 2.7823 10 7 1.6200 2.4403 3.4642 11 6 1.3571 1.9318 4.7941 12 6 -0.0919 1.5288 4.9777 13 6 -1.0270 2.7100 5.1191 14 1 -2.0407 2.3866 5.3558 15 6 -0.4428 3.6005 6.2414 16 6 0.5174 4.5595 5.5086 17 6 0.2183 4.3766 4.0411 18 1 -0.0689 5.3561 3.6588 19 6 1.3533 3.8820 3.1561 20 7 -0.9770 3.5193 3.8732 21 6 -1.8407 3.4808 2.8112 22 1 -2.6794 2.8005 2.8217 23 6 -1.6381 4.3159 1.7212 24 7 -0.6154 5.1446 1.7081 25 14 -2.8158 4.2629 0.2721 26 1 -4.1854 4.6027 0.7347 27 1 -2.3818 5.2440 -0.7546 28 1 -2.8161 2.8992 -0.3158 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9332 3.9647 -1.7977 35 1 1.9910 1.0631 4.9722 36 1 1.6031 2.7041 5.5230 37 1 -0.4025 0.9377 4.1161 38 1 -0.1728 0.9115 5.8723 39 1 0.1031 2.9936 6.9639 40 1 -1.2367 4.1604 6.7355 41 1 0.3242 5.5896 5.8080 42 1 1.5528 4.2917 5.7194 43 1 1.0703 3.9848 2.1085 44 1 2.2508 4.4688 3.3521 45 1 -0.4737 5.7279 0.9462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045793593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:42 Heat of formation + Delta-G solvation = 56.100820 kcal Electronic energy + Delta-G solvation = -29503.741664 eV Core-core repulsion = 25842.473515 eV Total energy + Delta-G solvation = -3661.268149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19888 -39.40060 -37.82405 -34.10472 -33.32481 -33.04180 -31.64706 -29.76110 -29.38830 -27.26162 -26.13429 -25.35876 -23.93269 -22.90119 -22.42053 -20.48701 -19.63057 -19.11091 -18.02746 -17.82659 -16.98756 -16.00107 -15.59293 -15.17426 -14.99893 -14.68727 -14.35827 -14.07136 -13.91967 -13.68646 -13.32084 -13.13200 -12.82186 -12.61382 -12.29801 -11.95879 -11.89241 -11.56411 -11.52937 -11.33958 -11.22787 -10.95274 -10.92714 -10.85849 -10.79846 -10.50608 -10.29459 -10.14247 -9.82628 -9.66145 -9.62663 -9.35641 -9.17014 -8.82713 -8.71479 -8.37841 -7.84159 -6.97767 -5.82056 -3.18457 0.78081 1.65473 2.02555 2.95409 3.33457 3.38228 3.40593 3.42048 3.85288 4.38183 4.50959 5.03552 5.21528 5.28720 5.33666 5.41064 5.45153 5.53932 5.63683 5.70796 5.76292 5.83621 5.87916 5.90846 5.96971 6.12465 6.19496 6.23206 6.27935 6.33362 6.40812 6.45597 6.58633 6.59605 6.64383 6.71272 6.73713 6.80323 7.02187 7.23295 7.33405 7.50340 7.64869 7.96840 8.07674 8.15599 8.71520 9.06524 9.65943 10.39000 11.24640 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.007399 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.462362 B = 3783.373529 C = 4757.762601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C 0.126 3.874 4 N -0.475 5.475 5 C -0.003 4.003 6 S 0.205 5.795 7 C -0.267 4.267 8 C 0.595 3.405 9 O -0.552 6.552 10 N -0.581 5.581 11 C 0.116 3.884 12 C -0.147 4.147 13 C 0.150 3.850 14 H 0.062 0.938 15 C -0.131 4.131 16 C -0.124 4.124 17 C 0.144 3.856 18 H 0.106 0.894 19 C 0.097 3.903 20 N -0.579 5.579 21 C -0.200 4.200 22 H 0.078 0.922 23 C -0.009 4.009 24 N -0.923 5.923 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.289 1.289 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.137 0.863 44 H 0.035 0.965 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.341 -1.131 2.605 6.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.097 4.097 3 C -0.012 4.012 4 N -0.189 5.189 5 C -0.297 4.297 6 S 0.462 5.538 7 C -0.391 4.391 8 C 0.381 3.619 9 O -0.434 6.434 10 N -0.311 5.311 11 C -0.007 4.007 12 C -0.187 4.187 13 C 0.042 3.958 14 H 0.081 0.919 15 C -0.170 4.170 16 C -0.163 4.163 17 C 0.037 3.963 18 H 0.123 0.877 19 C -0.026 4.026 20 N -0.301 5.301 21 C -0.328 4.328 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.573 5.573 25 Si 0.736 3.264 26 H -0.212 1.212 27 H -0.215 1.215 28 H -0.212 1.212 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.213 0.787 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.154 0.846 44 H 0.054 0.946 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.657 -0.792 2.464 7.142 hybrid contribution -0.974 -0.601 -1.029 1.539 sum 5.682 -1.393 1.435 6.024 Atomic orbital electron populations 1.21668 0.94038 1.01486 1.02739 1.20308 0.96438 0.89002 1.03938 1.20412 0.97581 0.98064 0.85167 1.66019 1.15038 1.06365 1.31479 1.28574 1.03406 0.96111 1.01599 1.84067 1.57253 1.11122 1.01352 1.25417 1.16384 0.98040 0.99279 1.16738 0.77520 0.84947 0.82703 1.90700 1.53481 1.18008 1.81200 1.48355 1.60952 1.11722 1.10078 1.20866 0.96385 0.99571 0.83882 1.21970 0.96112 0.99744 1.00903 1.21177 0.96067 0.90858 0.87692 0.91944 1.22678 0.98593 0.97997 0.97701 1.21958 0.98313 0.98964 0.97020 1.20488 0.86540 0.99023 0.90223 0.87670 1.23856 0.96468 0.76192 1.06039 1.44979 1.27220 1.41989 1.15916 1.18970 1.03521 1.16987 0.93343 0.90431 1.24582 0.98528 0.99147 0.98043 1.69653 1.29636 1.26874 1.31102 0.86276 0.80416 0.77436 0.82316 1.21218 1.21495 1.21221 0.92810 0.92348 0.91944 0.90678 0.88401 0.78702 0.91282 0.90318 0.92269 0.92678 0.92064 0.92349 0.92077 0.92302 0.84579 0.94642 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.89 37.16 0.37 -2.17 16 2 C -0.06 -1.02 6.12 -27.88 -0.17 -1.19 16 3 C 0.13 2.46 6.04 -83.89 -0.51 1.95 16 4 N -0.47 -8.80 10.50 -11.53 -0.12 -8.92 16 5 C 0.00 -0.04 12.22 51.75 0.63 0.59 16 6 S 0.21 3.43 19.73 -107.50 -2.12 1.31 16 7 C -0.27 -5.32 5.60 -37.10 -0.21 -5.53 16 8 C 0.59 12.52 7.35 -12.85 -0.09 12.43 16 9 O -0.55 -12.31 14.57 5.20 0.08 -12.23 16 10 N -0.58 -11.60 2.87 -175.19 -0.50 -12.11 16 11 C 0.12 2.08 5.18 -5.71 -0.03 2.05 16 12 C -0.15 -2.64 5.01 -28.33 -0.14 -2.78 16 13 C 0.15 2.82 4.08 -66.68 -0.27 2.55 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.13 -2.07 6.02 -25.18 -0.15 -2.22 16 16 C -0.12 -2.08 5.79 -27.16 -0.16 -2.24 16 17 C 0.14 2.99 1.97 -68.56 -0.13 2.85 16 18 H 0.11 2.51 6.09 -51.93 -0.32 2.20 16 19 C 0.10 1.97 4.36 -2.60 -0.01 1.95 16 20 N -0.58 -13.07 2.69 -156.95 -0.42 -13.50 16 21 C -0.20 -5.08 10.40 -15.06 -0.16 -5.23 16 22 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.22 5.47 -17.43 -0.10 -0.31 16 24 N -0.92 -23.11 8.12 55.49 0.45 -22.66 16 25 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.83 6.10 -51.93 -0.32 1.52 16 34 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 35 H 0.07 1.24 7.17 -51.93 -0.37 0.86 16 36 H 0.08 1.27 3.92 -51.92 -0.20 1.07 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.83 7.38 -51.93 -0.38 0.44 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.89 6.15 -51.93 -0.32 0.57 16 43 H 0.14 3.01 3.20 -44.55 -0.14 2.87 16 44 H 0.04 0.66 8.03 -51.93 -0.42 0.24 16 45 H 0.25 6.32 8.31 -40.82 -0.34 5.98 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -28.50 350.36 -9.76 -38.26 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.24 Total: 5.67 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.13 Total: 2.70 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.59 Total: -57.18 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.12 Total: 1.31 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.50 -9.76 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045793593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.358 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds