Wall clock time and date at job start Tue Mar 31 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46762 * 2 1 4 4 N 1.30941 * 122.90187 * 269.95589 * 3 2 1 5 5 C 1.29428 * 117.36345 * 180.02562 * 4 3 2 6 6 S 1.70954 * 110.39006 * 359.72871 * 5 4 3 7 7 C 1.35662 * 122.90365 * 89.99788 * 3 2 1 8 8 C 1.46681 * 126.13285 * 359.96374 * 7 3 2 9 9 O 1.21683 * 120.00184 * 38.56122 * 8 7 3 10 10 N 1.34777 * 119.99751 * 218.56261 * 8 7 3 11 11 C 1.44791 * 120.17789 * 175.68365 * 10 8 7 12 12 C 1.51512 * 112.23115 * 264.53533 * 11 10 8 13 13 C 1.51318 * 113.24787 * 285.36898 * 12 11 10 14 14 H 1.08997 * 111.31222 * 186.10464 * 13 12 11 15 15 C 1.54724 * 106.48174 * 307.66417 * 13 12 11 16 16 C 1.54227 * 104.37769 * 89.12251 * 15 13 12 17 17 C 1.50873 * 105.27201 * 11.55897 * 16 15 13 18 18 H 1.08999 * 106.52531 * 121.73590 * 17 16 15 19 19 C 1.49819 * 120.18094 * 355.67221 * 10 8 7 20 20 N 1.48058 * 109.90921 * 7.87060 * 17 16 15 21 21 C 1.36943 * 127.84050 * 155.15819 * 20 17 16 22 22 H 1.07994 * 119.99914 * 180.02562 * 21 20 17 23 23 C 1.38804 * 119.99917 * 0.02874 * 21 20 17 24 24 N 1.31630 * 120.00190 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47077 * 60.00177 * 25 23 21 27 27 H 1.48496 * 109.47244 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47161 * 300.00338 * 25 23 21 29 29 H 1.09000 * 109.46841 * 60.00371 * 1 2 3 30 30 H 1.09002 * 109.46454 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47411 * 300.00165 * 1 2 3 32 32 H 1.09000 * 109.47411 * 239.99835 * 2 1 3 33 33 H 1.09000 * 109.46841 * 119.99629 * 2 1 3 34 34 H 1.08002 * 124.80237 * 180.02562 * 5 4 3 35 35 H 1.09003 * 108.92719 * 25.24286 * 11 10 8 36 36 H 1.09007 * 108.92630 * 143.91100 * 11 10 8 37 37 H 1.08999 * 108.72450 * 46.33769 * 12 11 10 38 38 H 1.08999 * 108.72532 * 164.51765 * 12 11 10 39 39 H 1.09004 * 110.45058 * 330.40068 * 15 13 12 40 40 H 1.08994 * 110.45221 * 207.84958 * 15 13 12 41 41 H 1.09000 * 110.28836 * 130.50756 * 16 15 13 42 42 H 1.09004 * 110.28563 * 252.61409 * 16 15 13 43 43 H 1.08997 * 109.54591 * 30.85029 * 19 10 8 44 44 H 1.08998 * 109.54321 * 270.57116 * 19 10 8 45 45 H 0.96993 * 119.99936 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2702 2.0912 -1.0994 5 6 2.6999 3.3057 -0.9745 6 16 2.8381 3.7216 0.6779 7 6 2.2779 2.1157 1.1390 8 6 2.1022 1.6212 2.5087 9 8 2.3919 0.4714 2.7823 10 7 1.6200 2.4403 3.4642 11 6 1.3571 1.9318 4.7941 12 6 -0.0919 1.5288 4.9777 13 6 -1.0270 2.7100 5.1191 14 1 -2.0407 2.3866 5.3558 15 6 -0.4428 3.6005 6.2414 16 6 0.5174 4.5595 5.5086 17 6 0.2183 4.3766 4.0411 18 1 -0.0689 5.3561 3.6588 19 6 1.3533 3.8820 3.1561 20 7 -0.9770 3.5193 3.8732 21 6 -1.8407 3.4808 2.8112 22 1 -2.6794 2.8005 2.8217 23 6 -1.6381 4.3159 1.7212 24 7 -0.6154 5.1446 1.7081 25 14 -2.8158 4.2629 0.2721 26 1 -4.1854 4.6027 0.7347 27 1 -2.3818 5.2440 -0.7546 28 1 -2.8161 2.8992 -0.3158 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9332 3.9647 -1.7977 35 1 1.9910 1.0631 4.9722 36 1 1.6031 2.7041 5.5230 37 1 -0.4025 0.9377 4.1161 38 1 -0.1728 0.9115 5.8723 39 1 0.1031 2.9936 6.9639 40 1 -1.2367 4.1604 6.7355 41 1 0.3242 5.5896 5.8080 42 1 1.5528 4.2917 5.7194 43 1 1.0703 3.9848 2.1085 44 1 2.2508 4.4688 3.3521 45 1 -0.4737 5.7279 0.9462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045793593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:41 Heat of formation + Delta-G solvation = 40.187152 kcal Electronic energy + Delta-G solvation = -29504.431733 eV Core-core repulsion = 25842.473515 eV Total energy + Delta-G solvation = -3661.958217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70208 -40.83533 -39.37472 -35.69764 -35.01920 -34.50049 -33.20297 -31.37444 -30.94357 -28.73784 -27.68380 -26.78237 -25.69652 -24.31098 -23.89373 -21.94123 -21.21782 -20.63470 -19.50850 -19.31335 -18.56811 -17.55863 -17.13452 -16.76784 -16.57418 -16.30585 -15.77750 -15.71761 -15.44091 -15.12490 -14.75517 -14.68810 -14.36553 -14.18426 -13.83385 -13.48464 -13.34327 -13.11191 -13.02907 -12.98748 -12.79670 -12.69189 -12.56149 -12.35804 -12.28970 -12.02650 -11.95607 -11.68173 -11.44663 -11.32158 -11.16955 -10.79315 -10.68426 -10.51260 -10.22720 -9.77564 -9.38299 -8.76402 -7.73111 -5.07958 -0.60984 0.28850 0.66829 1.42053 1.45675 1.47827 1.50333 1.89020 2.33083 2.49881 3.20470 3.36077 3.55611 3.66967 3.95745 4.00778 4.06549 4.13811 4.23267 4.28968 4.30552 4.39177 4.42474 4.53750 4.55308 4.68658 4.73153 4.83813 4.86762 4.91417 4.96222 5.09842 5.11766 5.16417 5.24490 5.25403 5.29287 5.35463 5.53530 5.57768 5.73992 5.85811 5.92176 6.34641 6.44355 6.65321 7.13745 7.20823 7.81509 8.56168 9.29860 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.007399 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.462362 B = 3783.373529 C = 4757.762601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C 0.115 3.885 4 N -0.496 5.496 5 C 0.009 3.991 6 S 0.233 5.767 7 C -0.306 4.306 8 C 0.588 3.412 9 O -0.575 6.575 10 N -0.581 5.581 11 C 0.112 3.888 12 C -0.137 4.137 13 C 0.139 3.861 14 H 0.057 0.943 15 C -0.118 4.118 16 C -0.120 4.120 17 C 0.148 3.852 18 H 0.071 0.929 19 C 0.097 3.903 20 N -0.598 5.598 21 C -0.212 4.212 22 H 0.064 0.936 23 C -0.040 4.040 24 N -0.921 5.921 25 Si 0.941 3.059 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.298 1.298 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.024 0.976 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.018 0.982 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.052 0.948 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.369 -0.535 3.504 8.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.094 4.094 3 C -0.024 4.024 4 N -0.211 5.211 5 C -0.284 4.284 6 S 0.491 5.509 7 C -0.431 4.431 8 C 0.375 3.625 9 O -0.459 6.459 10 N -0.311 5.311 11 C -0.010 4.010 12 C -0.177 4.177 13 C 0.032 3.968 14 H 0.075 0.925 15 C -0.156 4.156 16 C -0.158 4.158 17 C 0.041 3.959 18 H 0.089 0.911 19 C -0.026 4.026 20 N -0.320 5.320 21 C -0.341 4.341 22 H 0.082 0.918 23 C -0.234 4.234 24 N -0.571 5.571 25 Si 0.772 3.228 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.225 1.225 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.044 0.956 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.255 0.745 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.037 0.963 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.071 0.929 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.685 -0.179 3.401 8.406 hybrid contribution -1.316 -0.773 -1.347 2.035 sum 6.370 -0.952 2.054 6.760 Atomic orbital electron populations 1.21568 0.94325 1.02548 1.00442 1.20293 0.96015 0.88827 1.04301 1.20691 0.97414 0.98718 0.85543 1.66076 1.16461 1.07450 1.31064 1.29347 1.00886 0.95674 1.02508 1.83842 1.56364 1.09120 1.01597 1.25494 1.18405 1.00170 0.98985 1.16969 0.77335 0.84809 0.83366 1.90663 1.54619 1.18804 1.81776 1.48417 1.60455 1.11529 1.10722 1.21046 0.96091 1.00391 0.83497 1.21878 0.95948 0.99242 1.00633 1.21403 0.96387 0.91523 0.87447 0.92475 1.22610 0.98747 0.97485 0.96807 1.21927 0.99771 1.00040 0.94055 1.20531 0.85909 0.96750 0.92718 0.91110 1.23685 0.97078 0.76603 1.05206 1.45122 1.27490 1.43091 1.16347 1.19012 1.03839 1.16563 0.94657 0.91819 1.24949 0.99606 0.99679 0.99146 1.69796 1.29745 1.26797 1.30795 0.85724 0.79697 0.76411 0.80951 1.21083 1.21608 1.22534 0.93407 0.89657 0.95641 0.88586 0.89568 0.74480 0.91267 0.87773 0.96329 0.89356 0.88694 0.91607 0.91014 0.90106 0.86339 0.92946 0.94183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.89 71.98 0.71 -4.09 16 2 C -0.05 -1.98 6.12 29.85 0.18 -1.80 16 3 C 0.12 4.51 6.04 42.10 0.25 4.76 16 4 N -0.50 -17.92 10.50 -190.40 -2.00 -19.91 16 5 C 0.01 0.28 12.22 130.60 1.60 1.88 16 6 S 0.23 7.57 19.73 -56.49 -1.11 6.45 16 7 C -0.31 -12.27 5.60 23.88 0.13 -12.14 16 8 C 0.59 25.01 7.35 86.45 0.63 25.65 16 9 O -0.58 -26.09 14.57 -4.30 -0.06 -26.15 16 10 N -0.58 -22.96 2.87 -826.41 -2.37 -25.33 16 11 C 0.11 3.82 5.18 86.21 0.45 4.27 16 12 C -0.14 -4.76 5.01 29.56 0.15 -4.61 16 13 C 0.14 5.08 4.08 44.61 0.18 5.26 16 14 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 15 C -0.12 -3.32 6.02 31.60 0.19 -3.13 16 16 C -0.12 -3.64 5.79 30.32 0.18 -3.47 16 17 C 0.15 5.97 1.97 43.73 0.09 6.06 16 18 H 0.07 3.37 6.09 -2.39 -0.01 3.35 16 19 C 0.10 3.86 4.36 85.46 0.37 4.23 16 20 N -0.60 -27.02 2.69 -650.46 -1.75 -28.77 16 21 C -0.21 -10.97 10.40 84.03 0.87 -10.09 16 22 H 0.06 3.37 7.83 -2.91 -0.02 3.35 16 23 C -0.04 -2.06 5.47 84.86 0.46 -1.60 16 24 N -0.92 -46.48 8.12 21.65 0.18 -46.30 16 25 Si 0.94 44.22 29.55 68.60 2.03 46.25 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 27 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.09 3.31 6.10 -2.39 -0.01 3.30 16 34 H 0.24 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.07 2.37 7.17 -2.39 -0.02 2.36 16 36 H 0.10 2.99 3.92 -2.38 -0.01 2.98 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.09 2.08 7.38 -2.39 -0.02 2.06 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.08 2.11 6.15 -2.38 -0.01 2.10 16 43 H 0.12 5.23 3.20 -7.08 -0.02 5.21 16 44 H 0.05 1.88 8.03 -2.39 -0.02 1.86 16 45 H 0.25 12.43 8.31 -92.71 -0.77 11.66 16 Total: -1.00 -63.61 350.36 2.36 -61.25 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.00 Total: 21.34 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.45 Total: 11.17 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -5.94 Total: -120.31 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -1.11 Total: 6.45 kcal Total: -63.61 2.36 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045793593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.437 kcal (2) G-P(sol) polarization free energy of solvation -63.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds