Wall clock time and date at job start Tue Mar 31 2020 18:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46909 * 2 1 4 4 N 1.29430 * 124.80716 * 90.02663 * 3 2 1 5 5 C 1.30943 * 117.36385 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19232 * 359.97438 * 5 4 3 7 7 C 1.46680 * 126.13298 * 179.97438 * 6 5 4 8 8 O 1.21689 * 119.99252 * 8.86858 * 7 6 5 9 9 N 1.34769 * 120.00313 * 188.85756 * 7 6 5 10 10 C 1.44900 * 120.24224 * 179.51761 * 9 7 6 11 11 C 1.51664 * 112.60611 * 265.58625 * 10 9 7 12 12 C 1.51494 * 113.12587 * 285.35865 * 11 10 9 13 13 H 1.09005 * 111.52339 * 184.33267 * 12 11 10 14 14 C 1.54614 * 107.63772 * 307.03748 * 12 11 10 15 15 C 1.54356 * 103.01012 * 81.50647 * 14 12 11 16 16 C 1.52274 * 104.70502 * 23.93559 * 15 14 12 17 17 H 1.09003 * 108.72519 * 113.10136 * 16 15 14 18 18 C 1.53046 * 112.66856 * 233.12236 * 16 15 14 19 19 N 1.47921 * 109.57196 * 354.45528 * 16 15 14 20 20 C 1.36936 * 127.29591 * 163.93064 * 19 16 15 21 21 H 1.08001 * 119.99871 * 354.64649 * 20 19 16 22 22 C 1.38812 * 119.99934 * 174.65234 * 20 19 16 23 23 N 1.31615 * 119.99978 * 336.18573 * 22 20 19 24 24 Si 1.86801 * 120.00098 * 156.18094 * 22 20 19 25 25 H 1.48502 * 109.46681 * 95.00131 * 24 22 20 26 26 H 1.48498 * 109.47496 * 214.99865 * 24 22 20 27 27 H 1.48495 * 109.47181 * 335.00637 * 24 22 20 28 28 S 1.70960 * 124.80161 * 270.33668 * 3 2 1 29 29 H 1.08992 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47007 * 300.00450 * 1 2 3 31 31 H 1.08997 * 109.46736 * 60.00285 * 1 2 3 32 32 H 1.09003 * 109.47307 * 239.99934 * 2 1 3 33 33 H 1.09001 * 109.47357 * 119.99322 * 2 1 3 34 34 H 1.07994 * 122.90131 * 180.02562 * 5 4 3 35 35 H 1.08999 * 108.85481 * 144.77926 * 10 9 7 36 36 H 1.08998 * 108.76989 * 26.33221 * 10 9 7 37 37 H 1.08991 * 108.74989 * 164.41866 * 11 10 9 38 38 H 1.08999 * 108.75277 * 46.30200 * 11 10 9 39 39 H 1.08999 * 110.70484 * 323.12892 * 14 12 11 40 40 H 1.09003 * 110.85644 * 199.95521 * 14 12 11 41 41 H 1.09001 * 110.38779 * 265.13267 * 15 14 12 42 42 H 1.08998 * 110.38653 * 142.74580 * 15 14 12 43 43 H 1.09005 * 109.59669 * 186.56817 * 18 16 15 44 44 H 1.08995 * 109.59760 * 307.03320 * 18 16 15 45 45 H 0.96998 * 120.00347 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2790 2.1173 1.0627 5 6 2.7112 3.3416 0.8931 6 6 2.8410 3.7104 -0.4060 7 6 3.3010 5.0154 -0.8928 8 8 3.7601 5.8284 -0.1124 9 7 3.2155 5.3138 -2.2043 10 6 3.6587 6.6053 -2.6893 11 6 2.5281 7.6118 -2.7839 12 6 1.6054 7.3615 -3.9591 13 1 0.8490 8.1415 -4.0469 14 6 2.4803 7.2719 -5.2308 15 6 3.0008 5.8193 -5.1929 16 6 1.9787 5.0642 -4.3540 17 1 1.4593 4.3507 -4.9938 18 6 2.6188 4.2936 -3.1970 19 7 0.9885 6.0158 -3.8044 20 6 -0.2359 5.7211 -3.2667 21 1 -0.6059 4.7067 -3.2900 22 6 -1.0016 6.7261 -2.6918 23 7 -0.4215 7.8159 -2.2356 24 14 -2.8552 6.5319 -2.5658 25 1 -3.2061 5.9879 -1.2293 26 1 -3.5051 7.8547 -2.7479 27 1 -3.3279 5.5987 -3.6197 28 16 2.3498 2.3436 -1.4038 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.9449 4.0005 1.7162 35 1 4.1004 6.4777 -3.6776 36 1 4.4192 6.9924 -2.0112 37 1 2.9549 8.6100 -2.8800 38 1 1.9440 7.5701 -1.8647 39 1 3.3079 7.9794 -5.1798 40 1 1.8825 7.4439 -6.1260 41 1 3.9827 5.7799 -4.7213 42 1 3.0455 5.4056 -6.2004 43 1 1.8638 3.6819 -2.7030 44 1 3.4163 3.6564 -3.5790 45 1 -0.9566 8.5184 -1.8342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045897952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:01 Heat of formation + Delta-G solvation = 67.199533 kcal Electronic energy + Delta-G solvation = -28492.628778 eV Core-core repulsion = 24831.841905 eV Total energy + Delta-G solvation = -3660.786873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10332 -39.47357 -37.91356 -34.07015 -33.96925 -32.69364 -32.18071 -29.75151 -29.46951 -27.42372 -26.17812 -25.59391 -24.09084 -22.98520 -22.17150 -20.65046 -19.92985 -19.20191 -18.33429 -17.81543 -16.97202 -16.28681 -15.69092 -15.29920 -15.20862 -14.65492 -14.50845 -14.27018 -14.02843 -13.96228 -13.63697 -13.30367 -12.92102 -12.65003 -12.39573 -12.17752 -11.97583 -11.80755 -11.66287 -11.52484 -11.34508 -11.29692 -11.24995 -10.97042 -10.81276 -10.70208 -10.52119 -10.11391 -9.78673 -9.67084 -9.59775 -9.30041 -9.03128 -9.00626 -8.67344 -8.59805 -7.99831 -6.98035 -5.87878 -3.10941 0.53366 1.43592 1.84575 2.77299 3.28291 3.34791 3.43298 3.44097 3.72643 4.16995 4.40691 4.79901 4.88198 5.10727 5.11741 5.14969 5.15477 5.35409 5.37149 5.51944 5.57716 5.58566 5.63923 5.68674 5.74740 5.77552 5.84421 5.96685 6.09076 6.14167 6.17151 6.30812 6.33448 6.39403 6.51046 6.54529 6.64653 6.73294 7.06664 7.13776 7.44084 7.60824 7.75970 7.86218 7.89200 8.08345 8.62858 9.03965 9.69304 10.41267 11.25343 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005640 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.056332 B = 4963.588085 C = 6131.070226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.013 3.987 4 N -0.483 5.483 5 C 0.107 3.893 6 C -0.273 4.273 7 C 0.594 3.406 8 O -0.543 6.543 9 N -0.581 5.581 10 C 0.101 3.899 11 C -0.140 4.140 12 C 0.186 3.814 13 H 0.092 0.908 14 C -0.141 4.141 15 C -0.133 4.133 16 C 0.145 3.855 17 H 0.054 0.946 18 C 0.089 3.911 19 N -0.577 5.577 20 C -0.234 4.234 21 H 0.076 0.924 22 C 0.005 3.995 23 N -0.894 5.894 24 Si 0.895 3.105 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.280 1.280 28 S 0.199 5.801 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.182 0.818 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -11.456 -3.834 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.261 4.261 4 N -0.197 5.197 5 C -0.050 4.050 6 C -0.397 4.397 7 C 0.380 3.620 8 O -0.424 6.424 9 N -0.312 5.312 10 C -0.021 4.021 11 C -0.180 4.180 12 C 0.080 3.920 13 H 0.110 0.890 14 C -0.180 4.180 15 C -0.171 4.171 16 C 0.036 3.964 17 H 0.072 0.928 18 C -0.037 4.037 19 N -0.299 5.299 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.194 4.194 23 N -0.538 5.538 24 Si 0.724 3.276 25 H -0.218 1.218 26 H -0.215 1.215 27 H -0.206 1.206 28 S 0.457 5.543 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.199 0.801 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.146 -11.395 -3.883 14.000 hybrid contribution -0.982 0.552 1.126 1.592 sum 6.164 -10.843 -2.758 12.774 Atomic orbital electron populations 1.21783 0.93467 1.02348 1.03112 1.20199 0.96772 0.87825 1.03863 1.27966 1.01794 1.01894 0.94406 1.66225 1.15339 1.06062 1.32072 1.22027 0.95966 0.91555 0.95452 1.25824 1.15796 1.00456 0.97645 1.16679 0.78602 0.84298 0.82385 1.90778 1.47579 1.49214 1.54806 1.49003 1.59947 1.16378 1.05920 1.21459 0.97530 0.83065 1.00047 1.21906 0.96591 0.95295 1.04226 1.21045 0.92401 0.89557 0.88970 0.89008 1.22788 0.99582 0.95084 1.00501 1.22449 0.98582 0.97075 0.98960 1.20907 0.90706 0.93056 0.91752 0.92808 1.24068 0.96807 0.90436 0.92383 1.45164 1.14716 1.00102 1.69935 1.18771 0.89786 0.94747 1.32803 0.90615 1.24643 0.98112 0.97402 0.99235 1.70037 1.33570 1.09391 1.40806 0.86384 0.86462 0.77058 0.77664 1.21801 1.21527 1.20556 1.84363 1.58272 1.02524 1.09122 0.91532 0.91912 0.92073 0.89814 0.89156 0.80099 0.89382 0.91619 0.93769 0.88915 0.91938 0.92223 0.90269 0.91955 0.89939 0.91720 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.16 0.37 -1.12 16 2 C -0.05 -0.47 6.51 -27.88 -0.18 -0.65 16 3 C 0.01 0.19 6.64 -13.29 -0.09 0.10 16 4 N -0.48 -8.03 10.51 -11.50 -0.12 -8.15 16 5 C 0.11 1.90 11.10 -18.85 -0.21 1.70 16 6 C -0.27 -5.03 6.29 -37.10 -0.23 -5.27 16 7 C 0.59 12.43 7.67 -12.86 -0.10 12.33 16 8 O -0.54 -12.82 16.38 5.20 0.09 -12.74 16 9 N -0.58 -11.18 2.98 -170.39 -0.51 -11.68 16 10 C 0.10 1.88 5.15 -5.58 -0.03 1.85 16 11 C -0.14 -2.98 4.98 -28.17 -0.14 -3.12 16 12 C 0.19 3.97 2.88 -66.55 -0.19 3.78 16 13 H 0.09 2.28 6.73 -51.93 -0.35 1.93 16 14 C -0.14 -2.31 6.10 -25.17 -0.15 -2.47 16 15 C -0.13 -1.96 5.76 -26.39 -0.15 -2.11 16 16 C 0.14 2.56 3.17 -67.50 -0.21 2.35 16 17 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.09 1.48 4.59 0.52 0.00 1.48 16 19 N -0.58 -12.96 2.58 -155.60 -0.40 -13.36 16 20 C -0.23 -5.99 10.18 -15.06 -0.15 -6.14 16 21 H 0.08 1.91 7.94 -52.49 -0.42 1.49 16 22 C 0.00 0.12 5.25 -17.43 -0.09 0.03 16 23 N -0.89 -24.88 9.90 55.49 0.55 -24.33 16 24 Si 0.89 21.35 29.62 -169.99 -5.03 16.31 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 S 0.20 2.88 18.12 -107.50 -1.95 0.94 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.18 3.09 8.06 -52.49 -0.42 2.67 16 35 H 0.09 1.40 3.46 -51.93 -0.18 1.22 16 36 H 0.07 1.26 7.24 -51.93 -0.38 0.88 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 2.47 6.95 -51.93 -0.36 2.11 16 39 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.08 4.94 -51.93 -0.26 0.82 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.46 4.33 -21.83 -0.09 1.37 16 44 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -31.30 354.76 -9.82 -41.12 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.22 Total: 3.79 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -1.57 Total: 2.75 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.48 Total: -57.53 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.95 Total: 0.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.30 -9.82 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045897952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.322 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds