Wall clock time and date at job start Tue Mar 31 2020 18:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.46909 * 2 1 4 4 N 1.29430 * 124.80716 * 90.02663 * 3 2 1 5 5 C 1.30943 * 117.36385 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19232 * 359.97438 * 5 4 3 7 7 C 1.46680 * 126.13298 * 179.97438 * 6 5 4 8 8 O 1.21689 * 119.99252 * 8.86858 * 7 6 5 9 9 N 1.34769 * 120.00313 * 188.85756 * 7 6 5 10 10 C 1.44900 * 120.24224 * 179.51761 * 9 7 6 11 11 C 1.51664 * 112.60611 * 265.58625 * 10 9 7 12 12 C 1.51494 * 113.12587 * 285.35865 * 11 10 9 13 13 H 1.09005 * 111.52339 * 184.33267 * 12 11 10 14 14 C 1.54614 * 107.63772 * 307.03748 * 12 11 10 15 15 C 1.54356 * 103.01012 * 81.50647 * 14 12 11 16 16 C 1.52274 * 104.70502 * 23.93559 * 15 14 12 17 17 H 1.09003 * 108.72519 * 113.10136 * 16 15 14 18 18 C 1.53046 * 112.66856 * 233.12236 * 16 15 14 19 19 N 1.47921 * 109.57196 * 354.45528 * 16 15 14 20 20 C 1.36936 * 127.29591 * 163.93064 * 19 16 15 21 21 H 1.08001 * 119.99871 * 354.64649 * 20 19 16 22 22 C 1.38812 * 119.99934 * 174.65234 * 20 19 16 23 23 N 1.31615 * 119.99978 * 336.18573 * 22 20 19 24 24 Si 1.86801 * 120.00098 * 156.18094 * 22 20 19 25 25 H 1.48502 * 109.46681 * 95.00131 * 24 22 20 26 26 H 1.48498 * 109.47496 * 214.99865 * 24 22 20 27 27 H 1.48495 * 109.47181 * 335.00637 * 24 22 20 28 28 S 1.70960 * 124.80161 * 270.33668 * 3 2 1 29 29 H 1.08992 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47007 * 300.00450 * 1 2 3 31 31 H 1.08997 * 109.46736 * 60.00285 * 1 2 3 32 32 H 1.09003 * 109.47307 * 239.99934 * 2 1 3 33 33 H 1.09001 * 109.47357 * 119.99322 * 2 1 3 34 34 H 1.07994 * 122.90131 * 180.02562 * 5 4 3 35 35 H 1.08999 * 108.85481 * 144.77926 * 10 9 7 36 36 H 1.08998 * 108.76989 * 26.33221 * 10 9 7 37 37 H 1.08991 * 108.74989 * 164.41866 * 11 10 9 38 38 H 1.08999 * 108.75277 * 46.30200 * 11 10 9 39 39 H 1.08999 * 110.70484 * 323.12892 * 14 12 11 40 40 H 1.09003 * 110.85644 * 199.95521 * 14 12 11 41 41 H 1.09001 * 110.38779 * 265.13267 * 15 14 12 42 42 H 1.08998 * 110.38653 * 142.74580 * 15 14 12 43 43 H 1.09005 * 109.59669 * 186.56817 * 18 16 15 44 44 H 1.08995 * 109.59760 * 307.03320 * 18 16 15 45 45 H 0.96998 * 120.00347 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2790 2.1173 1.0627 5 6 2.7112 3.3416 0.8931 6 6 2.8410 3.7104 -0.4060 7 6 3.3010 5.0154 -0.8928 8 8 3.7601 5.8284 -0.1124 9 7 3.2155 5.3138 -2.2043 10 6 3.6587 6.6053 -2.6893 11 6 2.5281 7.6118 -2.7839 12 6 1.6054 7.3615 -3.9591 13 1 0.8490 8.1415 -4.0469 14 6 2.4803 7.2719 -5.2308 15 6 3.0008 5.8193 -5.1929 16 6 1.9787 5.0642 -4.3540 17 1 1.4593 4.3507 -4.9938 18 6 2.6188 4.2936 -3.1970 19 7 0.9885 6.0158 -3.8044 20 6 -0.2359 5.7211 -3.2667 21 1 -0.6059 4.7067 -3.2900 22 6 -1.0016 6.7261 -2.6918 23 7 -0.4215 7.8159 -2.2356 24 14 -2.8552 6.5319 -2.5658 25 1 -3.2061 5.9879 -1.2293 26 1 -3.5051 7.8547 -2.7479 27 1 -3.3279 5.5987 -3.6197 28 16 2.3498 2.3436 -1.4038 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 2.9449 4.0005 1.7162 35 1 4.1004 6.4777 -3.6776 36 1 4.4192 6.9924 -2.0112 37 1 2.9549 8.6100 -2.8800 38 1 1.9440 7.5701 -1.8647 39 1 3.3079 7.9794 -5.1798 40 1 1.8825 7.4439 -6.1260 41 1 3.9827 5.7799 -4.7213 42 1 3.0455 5.4056 -6.2004 43 1 1.8638 3.6819 -2.7030 44 1 3.4163 3.6564 -3.5790 45 1 -0.9566 8.5184 -1.8342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045897952.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:00 Heat of formation + Delta-G solvation = 47.370115 kcal Electronic energy + Delta-G solvation = -28493.488646 eV Core-core repulsion = 24831.841905 eV Total energy + Delta-G solvation = -3661.646741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58875 -40.78736 -39.45130 -35.67951 -34.97458 -34.44263 -33.71370 -31.17201 -31.04921 -28.85724 -27.68223 -26.79254 -25.86575 -24.18844 -23.44885 -22.08448 -21.30556 -20.84836 -19.62080 -19.23674 -18.61199 -17.77994 -17.17995 -16.76611 -16.66568 -16.32396 -15.84034 -15.73767 -15.45802 -15.11221 -14.87800 -14.71811 -14.32434 -14.12727 -13.90806 -13.60863 -13.27507 -13.20195 -13.18888 -12.83128 -12.75640 -12.61650 -12.54201 -12.49342 -12.43782 -12.06569 -12.00313 -11.80902 -11.45583 -11.30961 -11.21054 -10.60974 -10.52530 -10.45522 -10.30064 -9.96124 -9.46971 -8.81563 -7.87919 -5.08303 -0.74969 0.19925 0.60543 1.40905 1.41539 1.44836 1.52268 1.83338 2.24318 2.49718 3.05923 3.28857 3.41923 3.60366 3.89865 3.91729 4.01754 4.17634 4.20451 4.24272 4.29664 4.31421 4.37925 4.42333 4.53315 4.66408 4.67950 4.73203 4.82529 4.96364 4.97396 5.00111 5.09367 5.12336 5.21177 5.32749 5.33982 5.42668 5.46696 5.57397 5.61441 5.78727 6.08728 6.19828 6.26930 6.62053 7.06674 7.10074 7.80046 8.53775 9.24109 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010555 B = 0.005640 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.056332 B = 4963.588085 C = 6131.070226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.020 3.980 4 N -0.506 5.506 5 C 0.103 3.897 6 C -0.317 4.317 7 C 0.582 3.418 8 O -0.589 6.589 9 N -0.583 5.583 10 C 0.104 3.896 11 C -0.128 4.128 12 C 0.180 3.820 13 H 0.045 0.955 14 C -0.130 4.130 15 C -0.122 4.122 16 C 0.136 3.864 17 H 0.072 0.928 18 C 0.087 3.913 19 N -0.597 5.597 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.055 4.055 23 N -0.923 5.923 24 Si 0.946 3.054 25 H -0.302 1.302 26 H -0.300 1.300 27 H -0.264 1.264 28 S 0.259 5.741 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.130 0.870 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.112 0.888 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 -14.990 -6.823 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.253 4.253 4 N -0.220 5.220 5 C -0.055 4.055 6 C -0.441 4.441 7 C 0.370 3.630 8 O -0.472 6.472 9 N -0.314 5.314 10 C -0.018 4.018 11 C -0.168 4.168 12 C 0.074 3.926 13 H 0.063 0.937 14 C -0.168 4.168 15 C -0.159 4.159 16 C 0.028 3.972 17 H 0.089 0.911 18 C -0.037 4.037 19 N -0.319 5.319 20 C -0.351 4.351 21 H 0.098 0.902 22 C -0.250 4.250 23 N -0.571 5.571 24 Si 0.776 3.224 25 H -0.230 1.230 26 H -0.226 1.226 27 H -0.189 1.189 28 S 0.519 5.481 29 H 0.115 0.885 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.120 0.880 34 H 0.190 0.810 35 H 0.147 0.853 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.129 0.871 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.249 -14.983 -6.946 18.460 hybrid contribution -1.357 1.537 2.047 2.897 sum 6.892 -13.446 -4.899 15.884 Atomic orbital electron populations 1.21799 0.93111 1.03939 1.01784 1.20495 0.96851 0.85332 1.06124 1.28789 0.99437 1.03222 0.93879 1.66299 1.16779 1.05752 1.33202 1.22060 0.95807 0.92205 0.95453 1.25721 1.18113 1.01288 0.98988 1.17122 0.78171 0.84961 0.82721 1.90729 1.49656 1.50896 1.55963 1.49183 1.59407 1.16861 1.05899 1.21492 0.96023 0.82420 1.01838 1.21747 0.96782 0.96846 1.01459 1.20969 0.91954 0.88185 0.91517 0.93667 1.22664 0.99345 0.97341 0.97472 1.22443 0.97880 0.94943 1.00586 1.21270 0.90772 0.92959 0.92184 0.91054 1.24249 0.98073 0.90202 0.91187 1.45334 1.15114 1.01921 1.69574 1.19056 0.91092 0.94466 1.30453 0.90240 1.25264 1.01027 0.97930 1.00774 1.70236 1.33812 1.10091 1.42928 0.85560 0.83134 0.76464 0.77210 1.23030 1.22650 1.18905 1.83856 1.56972 0.99649 1.07611 0.88539 0.93976 0.92675 0.86431 0.88010 0.81016 0.85333 0.92744 0.93201 0.95121 0.89589 0.91740 0.88574 0.88093 0.90952 0.87051 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.89 71.98 0.71 -1.81 16 2 C -0.05 -0.81 6.51 29.85 0.19 -0.62 16 3 C 0.02 0.52 6.64 88.46 0.59 1.11 16 4 N -0.51 -16.61 10.51 -190.29 -2.00 -18.61 16 5 C 0.10 3.78 11.10 84.23 0.94 4.72 16 6 C -0.32 -11.75 6.29 23.88 0.15 -11.60 16 7 C 0.58 24.97 7.67 86.45 0.66 25.63 16 8 O -0.59 -29.37 16.38 -4.31 -0.07 -29.44 16 9 N -0.58 -21.95 2.98 -811.21 -2.42 -24.36 16 10 C 0.10 3.80 5.15 86.24 0.44 4.24 16 11 C -0.13 -5.60 4.98 29.66 0.15 -5.45 16 12 C 0.18 7.70 2.88 44.60 0.13 7.83 16 13 H 0.05 2.35 6.73 -2.38 -0.02 2.33 16 14 C -0.13 -3.85 6.10 31.60 0.19 -3.66 16 15 C -0.12 -2.92 5.76 30.81 0.18 -2.74 16 16 C 0.14 4.30 3.17 44.49 0.14 4.44 16 17 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 18 C 0.09 2.61 4.59 84.81 0.39 3.00 16 19 N -0.60 -26.35 2.58 -646.19 -1.67 -28.02 16 20 C -0.22 -11.39 10.18 84.03 0.86 -10.53 16 21 H 0.08 3.93 7.94 -2.91 -0.02 3.91 16 22 C -0.06 -3.04 5.25 84.86 0.45 -2.59 16 23 N -0.92 -54.56 9.90 21.65 0.21 -54.34 16 24 Si 0.95 45.27 29.62 68.60 2.03 47.30 16 25 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 26 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 27 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 28 S 0.26 6.89 18.12 -56.49 -1.02 5.87 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.17 6.34 8.06 -2.91 -0.02 6.32 16 35 H 0.13 3.61 3.46 -2.39 -0.01 3.60 16 36 H 0.05 2.11 7.24 -2.39 -0.02 2.09 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.03 1.72 6.95 -2.39 -0.02 1.70 16 39 H 0.09 2.17 7.90 -2.39 -0.02 2.15 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.10 2.01 4.94 -2.39 -0.01 2.00 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 2.36 4.33 -21.52 -0.09 2.27 16 44 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 45 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -75.35 354.76 2.16 -73.19 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.93 Total: 16.46 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.16 Total: 11.96 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -5.87 Total: -125.33 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.07 Total: -29.44 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.02 Total: 5.87 kcal Total: -75.35 2.16 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045897952.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.558 kcal (2) G-P(sol) polarization free energy of solvation -75.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds