Wall clock time and date at job start Tue Mar 31 2020 18:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47033 * 2 1 4 4 N 1.30936 * 122.90697 * 269.99546 * 3 2 1 5 5 C 1.29435 * 117.36839 * 180.02562 * 4 3 2 6 6 S 1.70948 * 110.38579 * 359.73049 * 5 4 3 7 7 C 1.35665 * 122.90092 * 90.00213 * 3 2 1 8 8 C 1.46679 * 126.13564 * 359.97438 * 7 3 2 9 9 O 1.21690 * 119.99731 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00304 * 180.02562 * 8 7 3 11 11 C 1.46499 * 119.99935 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.18124 * 35.43900 * 11 10 8 13 13 C 1.53034 * 109.32499 * 154.99865 * 11 10 8 14 14 C 1.53969 * 108.93227 * 175.74277 * 13 11 10 15 15 H 1.09001 * 112.98914 * 168.02378 * 14 13 11 16 16 C 1.55424 * 106.41487 * 293.74815 * 14 13 11 17 17 C 1.55174 * 100.35219 * 73.38324 * 16 14 13 18 18 H 1.08999 * 113.05309 * 162.98476 * 17 16 14 19 19 C 1.53270 * 109.49833 * 275.80567 * 11 10 8 20 20 N 1.47788 * 104.25356 * 40.54858 * 17 16 14 21 21 C 1.36939 * 125.85845 * 153.56637 * 20 17 16 22 22 H 1.07999 * 119.99405 * 359.97438 * 21 20 17 23 23 C 1.38807 * 120.00259 * 179.97438 * 21 20 17 24 24 N 1.31622 * 120.00116 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46938 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46924 * 119.99903 * 25 23 21 28 28 H 1.48496 * 109.47291 * 240.00071 * 25 23 21 29 29 C 1.47078 * 108.29044 * 333.53530 * 20 17 16 30 30 H 1.09004 * 109.47202 * 299.99987 * 1 2 3 31 31 H 1.09009 * 109.46981 * 59.99868 * 1 2 3 32 32 H 1.08995 * 109.47319 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47202 * 240.00013 * 2 1 3 34 34 H 1.08995 * 109.46979 * 120.00017 * 2 1 3 35 35 H 1.07999 * 124.80859 * 180.02562 * 5 4 3 36 36 H 0.96996 * 120.00100 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.58001 * 55.87259 * 13 11 10 38 38 H 1.09001 * 109.57603 * 295.61081 * 13 11 10 39 39 H 1.09000 * 111.23215 * 191.15343 * 16 14 13 40 40 H 1.08992 * 111.23760 * 315.60570 * 16 14 13 41 41 H 1.08999 * 109.49999 * 64.80161 * 19 11 10 42 42 H 1.08995 * 109.56503 * 304.64658 * 19 11 10 43 43 H 0.97001 * 120.00103 * 179.97438 * 24 23 21 44 44 H 1.08996 * 109.97761 * 241.74721 * 29 20 17 45 45 H 1.08999 * 109.98204 * 120.45956 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0915 -1.0993 5 6 2.6993 3.3059 -0.9744 6 16 2.8387 3.7213 0.6780 7 6 2.2779 2.1156 1.1391 8 6 2.1026 1.6210 2.5088 9 8 1.7020 0.4879 2.6998 10 7 2.3851 2.4213 3.5557 11 6 2.2104 1.9271 4.9236 12 1 2.4699 0.8689 4.9580 13 6 3.1325 2.7054 5.8649 14 6 2.8649 2.2540 7.3124 15 1 3.6196 2.6075 8.0150 16 6 1.4204 2.7134 7.6559 17 6 0.5982 1.6934 6.8243 18 1 -0.4451 1.6327 7.1338 19 6 0.7486 2.1044 5.3489 20 7 1.3160 0.4142 7.0048 21 6 0.7623 -0.8353 6.9189 22 1 -0.2899 -0.9458 6.7021 23 6 1.5533 -1.9597 7.1104 24 7 2.8356 -1.8249 7.3752 25 14 0.7981 -3.6642 6.9926 26 1 -0.6500 -3.5438 6.6866 27 1 1.4700 -4.4296 5.9118 28 1 0.9742 -4.3741 8.2849 29 6 2.7271 0.7132 7.2917 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.9321 3.9652 -1.7974 36 1 2.7047 3.3244 3.4034 37 1 2.9323 3.7729 5.7722 38 1 4.1721 2.5050 5.6060 39 1 1.2160 2.6098 8.7215 40 1 1.2401 3.7341 7.3189 41 1 0.1103 1.4752 4.7286 42 1 0.4579 3.1481 5.2300 43 1 3.3883 -2.6107 7.5094 44 1 3.3628 0.2930 6.5124 45 1 3.0053 0.3015 8.2619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047084021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:21 Heat of formation + Delta-G solvation = 37.702012 kcal Electronic energy + Delta-G solvation = -27778.598321 eV Core-core repulsion = 24116.532340 eV Total energy + Delta-G solvation = -3662.065981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52703 -39.80656 -38.38095 -34.66206 -33.38582 -32.83370 -30.72097 -30.51009 -29.18822 -28.16317 -26.11808 -25.29911 -23.33189 -23.12140 -22.49691 -20.74985 -19.69402 -19.36350 -18.48394 -18.37567 -17.06571 -16.59509 -15.93818 -15.37112 -15.18470 -14.57912 -14.39203 -14.20385 -14.10999 -13.81401 -13.63588 -13.46933 -12.94609 -12.73702 -12.45699 -12.03293 -11.95119 -11.82948 -11.77193 -11.58461 -11.27533 -11.22664 -10.84904 -10.70978 -10.66078 -10.53549 -10.09206 -9.92576 -9.89599 -9.74892 -9.69683 -9.66649 -9.45272 -9.32562 -9.03068 -8.62656 -8.52422 -6.76408 -5.62637 -2.94911 0.12788 1.02178 1.38948 2.38376 3.30509 3.32110 3.47765 3.53884 3.55565 3.97094 4.58373 4.79661 4.85013 5.01708 5.21933 5.23074 5.40926 5.44173 5.49138 5.50926 5.57669 5.63854 5.87014 5.88386 5.94687 6.03033 6.05251 6.07217 6.07898 6.12394 6.22500 6.30107 6.38871 6.56085 6.61729 6.66419 6.83765 6.87818 6.97921 7.03631 7.42560 7.62044 7.64851 7.71539 7.89665 8.32336 8.41134 9.30373 9.90728 10.56280 11.49441 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.004173 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.609753 B = 6708.983973 C = 8259.362940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C 0.142 3.858 4 N -0.471 5.471 5 C 0.030 3.970 6 S 0.147 5.853 7 C -0.279 4.279 8 C 0.586 3.414 9 O -0.499 6.499 10 N -0.721 5.721 11 C 0.148 3.852 12 H 0.118 0.882 13 C -0.113 4.113 14 C -0.118 4.118 15 H 0.083 0.917 16 C -0.127 4.127 17 C 0.158 3.842 18 H 0.066 0.934 19 C -0.136 4.136 20 N -0.595 5.595 21 C -0.220 4.220 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.923 5.923 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.293 1.293 29 C 0.180 3.820 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.204 0.796 36 H 0.387 0.613 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.250 0.750 44 H 0.046 0.954 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 15.429 -12.318 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C 0.005 3.995 4 N -0.185 5.185 5 C -0.266 4.266 6 S 0.402 5.598 7 C -0.403 4.403 8 C 0.370 3.630 9 O -0.374 6.374 10 N -0.371 5.371 11 C 0.046 3.954 12 H 0.136 0.864 13 C -0.151 4.151 14 C -0.138 4.138 15 H 0.101 0.899 16 C -0.166 4.166 17 C 0.049 3.951 18 H 0.084 0.916 19 C -0.177 4.177 20 N -0.320 5.320 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.571 5.571 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.220 1.220 29 C 0.056 3.944 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.220 0.780 36 H 0.220 0.780 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.230 15.091 -12.178 19.431 hybrid contribution -0.325 -1.040 -0.452 1.180 sum 0.905 14.051 -12.630 18.915 Atomic orbital electron populations 1.21586 0.93792 1.02330 1.01607 1.20459 0.96831 0.88167 1.04724 1.20766 0.95466 0.98370 0.84884 1.66101 1.14838 1.06105 1.31424 1.28654 1.01635 0.96108 1.00181 1.83829 1.59643 1.12651 1.03697 1.25746 1.16618 0.98213 0.99707 1.16680 0.78622 0.85550 0.82156 1.90902 1.44554 1.17643 1.84339 1.46145 1.67875 1.16055 1.06995 1.21310 0.95377 1.01585 0.77178 0.86435 1.21972 0.98825 0.98383 0.95885 1.22835 0.96493 1.00256 0.94216 0.89910 1.22970 0.96025 0.97628 0.99958 1.21509 0.95538 0.86817 0.91227 0.91616 1.22672 0.95798 0.98950 1.00304 1.44629 1.04563 0.99959 1.82823 1.19057 0.93501 0.81403 1.40827 0.90546 1.24719 0.95772 0.97624 1.02076 1.69949 1.04322 1.27691 1.55156 0.86091 0.78219 0.84734 0.77039 1.20574 1.21816 1.21989 1.21308 0.86075 0.86614 1.00452 0.92255 0.93208 0.91695 0.90501 0.87304 0.77953 0.77989 0.92788 0.92114 0.91817 0.92235 0.92155 0.93836 0.93980 0.93586 0.93738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.46 16 2 C -0.06 -0.89 5.75 -27.89 -0.16 -1.05 16 3 C 0.14 2.02 6.04 -83.89 -0.51 1.51 16 4 N -0.47 -5.97 10.50 -11.53 -0.12 -6.09 16 5 C 0.03 0.28 12.22 51.75 0.63 0.91 16 6 S 0.15 1.38 22.35 -107.50 -2.40 -1.02 16 7 C -0.28 -3.92 6.48 -37.10 -0.24 -4.16 16 8 C 0.59 10.00 7.73 -12.85 -0.10 9.91 16 9 O -0.50 -10.56 13.93 5.20 0.07 -10.49 16 10 N -0.72 -11.04 5.08 -54.96 -0.28 -11.32 16 11 C 0.15 2.68 2.08 -67.77 -0.14 2.54 16 12 H 0.12 2.79 5.40 -51.93 -0.28 2.51 16 13 C -0.11 -1.75 4.94 -26.21 -0.13 -1.88 16 14 C -0.12 -2.08 4.33 -87.93 -0.38 -2.46 16 15 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 16 C -0.13 -2.13 6.18 -24.29 -0.15 -2.28 16 17 C 0.16 3.15 4.30 -65.61 -0.28 2.87 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 19 C -0.14 -2.51 5.29 -26.13 -0.14 -2.65 16 20 N -0.60 -14.75 2.43 -161.37 -0.39 -15.14 16 21 C -0.22 -6.14 10.29 -15.06 -0.16 -6.30 16 22 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -27.32 10.35 55.49 0.57 -26.75 16 25 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 C 0.18 4.23 4.10 -2.83 -0.01 4.22 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.11 1.82 6.01 -51.93 -0.31 1.51 16 35 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.39 4.67 7.78 -40.82 -0.32 4.35 16 37 H 0.05 0.70 7.97 -51.93 -0.41 0.28 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.04 0.69 8.00 -51.93 -0.42 0.27 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.05 1.21 6.15 -51.93 -0.32 0.89 16 45 H 0.04 1.18 7.40 -51.93 -0.38 0.79 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -32.74 364.57 -10.19 -42.92 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.62 Total: 5.05 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.49 Total: -0.55 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.22 Total: -59.30 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.40 Total: -1.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.74 -10.19 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047084021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.626 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds