Wall clock time and date at job start Tue Mar 31 2020 18:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47033 * 2 1 4 4 N 1.30936 * 122.90697 * 269.99546 * 3 2 1 5 5 C 1.29435 * 117.36839 * 180.02562 * 4 3 2 6 6 S 1.70948 * 110.38579 * 359.73049 * 5 4 3 7 7 C 1.35665 * 122.90092 * 90.00213 * 3 2 1 8 8 C 1.46679 * 126.13564 * 359.97438 * 7 3 2 9 9 O 1.21690 * 119.99731 * 0.02562 * 8 7 3 10 10 N 1.34774 * 120.00304 * 180.02562 * 8 7 3 11 11 C 1.46499 * 119.99935 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.18124 * 35.43900 * 11 10 8 13 13 C 1.53034 * 109.32499 * 154.99865 * 11 10 8 14 14 C 1.53969 * 108.93227 * 175.74277 * 13 11 10 15 15 H 1.09001 * 112.98914 * 168.02378 * 14 13 11 16 16 C 1.55424 * 106.41487 * 293.74815 * 14 13 11 17 17 C 1.55174 * 100.35219 * 73.38324 * 16 14 13 18 18 H 1.08999 * 113.05309 * 162.98476 * 17 16 14 19 19 C 1.53270 * 109.49833 * 275.80567 * 11 10 8 20 20 N 1.47788 * 104.25356 * 40.54858 * 17 16 14 21 21 C 1.36939 * 125.85845 * 153.56637 * 20 17 16 22 22 H 1.07999 * 119.99405 * 359.97438 * 21 20 17 23 23 C 1.38807 * 120.00259 * 179.97438 * 21 20 17 24 24 N 1.31622 * 120.00116 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00066 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46938 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46924 * 119.99903 * 25 23 21 28 28 H 1.48496 * 109.47291 * 240.00071 * 25 23 21 29 29 C 1.47078 * 108.29044 * 333.53530 * 20 17 16 30 30 H 1.09004 * 109.47202 * 299.99987 * 1 2 3 31 31 H 1.09009 * 109.46981 * 59.99868 * 1 2 3 32 32 H 1.08995 * 109.47319 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47202 * 240.00013 * 2 1 3 34 34 H 1.08995 * 109.46979 * 120.00017 * 2 1 3 35 35 H 1.07999 * 124.80859 * 180.02562 * 5 4 3 36 36 H 0.96996 * 120.00100 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.58001 * 55.87259 * 13 11 10 38 38 H 1.09001 * 109.57603 * 295.61081 * 13 11 10 39 39 H 1.09000 * 111.23215 * 191.15343 * 16 14 13 40 40 H 1.08992 * 111.23760 * 315.60570 * 16 14 13 41 41 H 1.08999 * 109.49999 * 64.80161 * 19 11 10 42 42 H 1.08995 * 109.56503 * 304.64658 * 19 11 10 43 43 H 0.97001 * 120.00103 * 179.97438 * 24 23 21 44 44 H 1.08996 * 109.97761 * 241.74721 * 29 20 17 45 45 H 1.08999 * 109.98204 * 120.45956 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0915 -1.0993 5 6 2.6993 3.3059 -0.9744 6 16 2.8387 3.7213 0.6780 7 6 2.2779 2.1156 1.1391 8 6 2.1026 1.6210 2.5088 9 8 1.7020 0.4879 2.6998 10 7 2.3851 2.4213 3.5557 11 6 2.2104 1.9271 4.9236 12 1 2.4699 0.8689 4.9580 13 6 3.1325 2.7054 5.8649 14 6 2.8649 2.2540 7.3124 15 1 3.6196 2.6075 8.0150 16 6 1.4204 2.7134 7.6559 17 6 0.5982 1.6934 6.8243 18 1 -0.4451 1.6327 7.1338 19 6 0.7486 2.1044 5.3489 20 7 1.3160 0.4142 7.0048 21 6 0.7623 -0.8353 6.9189 22 1 -0.2899 -0.9458 6.7021 23 6 1.5533 -1.9597 7.1104 24 7 2.8356 -1.8249 7.3752 25 14 0.7981 -3.6642 6.9926 26 1 -0.6500 -3.5438 6.6866 27 1 1.4700 -4.4296 5.9118 28 1 0.9742 -4.3741 8.2849 29 6 2.7271 0.7132 7.2917 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.9321 3.9652 -1.7974 36 1 2.7047 3.3244 3.4034 37 1 2.9323 3.7729 5.7722 38 1 4.1721 2.5050 5.6060 39 1 1.2160 2.6098 8.7215 40 1 1.2401 3.7341 7.3189 41 1 0.1103 1.4752 4.7286 42 1 0.4579 3.1481 5.2300 43 1 3.3883 -2.6107 7.5094 44 1 3.3628 0.2930 6.5124 45 1 3.0053 0.3015 8.2619 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047084021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:20 Heat of formation + Delta-G solvation = 15.274342 kcal Electronic energy + Delta-G solvation = -27779.570858 eV Core-core repulsion = 24116.532340 eV Total energy + Delta-G solvation = -3663.038518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74236 -41.08908 -39.73967 -36.19003 -34.75753 -34.43942 -32.40150 -31.86349 -30.73495 -29.57391 -27.21521 -27.07011 -24.93649 -24.34960 -23.75502 -22.10114 -21.27286 -20.82065 -19.83185 -19.35566 -18.92192 -17.84426 -17.30942 -16.65128 -16.52215 -16.34270 -15.84704 -15.42808 -15.30659 -15.23870 -14.99375 -14.73724 -14.39887 -14.15108 -13.79470 -13.48287 -13.45767 -13.35912 -13.23632 -13.02873 -12.99230 -12.64767 -12.52050 -12.35338 -12.14316 -11.93780 -11.87368 -11.64218 -11.40114 -11.19021 -11.09576 -10.95226 -10.69087 -10.67310 -10.63274 -10.06654 -9.85333 -8.81790 -7.82375 -5.13753 -0.79025 0.16713 0.53491 1.39125 1.39897 1.42401 1.50447 2.05523 2.09710 2.49344 3.13431 3.36587 3.65507 3.69524 3.82170 3.89225 3.97537 4.07377 4.12558 4.32190 4.37632 4.40906 4.41677 4.51764 4.53347 4.59661 4.66950 4.79183 4.83599 4.87910 4.96906 5.10207 5.16641 5.18664 5.23376 5.30342 5.34851 5.39167 5.49088 5.51479 5.62306 5.74493 5.85782 6.24501 6.43603 6.58780 7.15701 7.18292 7.84126 8.47750 9.27845 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.004173 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.609753 B = 6708.983973 C = 8259.362940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.065 4.065 3 C 0.138 3.862 4 N -0.500 5.500 5 C 0.046 3.954 6 S 0.231 5.769 7 C -0.324 4.324 8 C 0.582 3.418 9 O -0.556 6.556 10 N -0.706 5.706 11 C 0.156 3.844 12 H 0.051 0.949 13 C -0.103 4.103 14 C -0.106 4.106 15 H 0.111 0.889 16 C -0.110 4.110 17 C 0.141 3.859 18 H 0.063 0.937 19 C -0.124 4.124 20 N -0.614 5.614 21 C -0.225 4.225 22 H 0.071 0.929 23 C -0.064 4.064 24 N -0.949 5.949 25 Si 0.964 3.036 26 H -0.270 1.270 27 H -0.300 1.300 28 H -0.287 1.287 29 C 0.189 3.811 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.251 0.749 36 H 0.408 0.592 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.020 0.980 42 H 0.086 0.914 43 H 0.242 0.758 44 H 0.003 0.997 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 20.204 -13.707 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.104 4.104 3 C 0.000 4.000 4 N -0.214 5.214 5 C -0.248 4.248 6 S 0.487 5.513 7 C -0.448 4.448 8 C 0.368 3.632 9 O -0.436 6.436 10 N -0.357 5.357 11 C 0.052 3.948 12 H 0.069 0.931 13 C -0.141 4.141 14 C -0.125 4.125 15 H 0.130 0.870 16 C -0.148 4.148 17 C 0.035 3.965 18 H 0.081 0.919 19 C -0.164 4.164 20 N -0.339 5.339 21 C -0.355 4.355 22 H 0.089 0.911 23 C -0.257 4.257 24 N -0.599 5.599 25 Si 0.793 3.207 26 H -0.194 1.194 27 H -0.228 1.228 28 H -0.214 1.214 29 C 0.064 3.936 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.267 0.733 36 H 0.245 0.755 37 H 0.123 0.877 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.039 0.961 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.022 0.978 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 1.430 19.962 -13.566 24.178 hybrid contribution -0.393 -2.438 -0.130 2.473 sum 1.037 17.524 -13.696 22.266 Atomic orbital electron populations 1.21501 0.93374 1.02513 1.01054 1.20352 0.97275 0.89267 1.03537 1.20713 0.95340 0.98205 0.85764 1.66146 1.16936 1.07657 1.30646 1.29538 0.98187 0.95274 1.01837 1.83435 1.57455 1.07837 1.02567 1.25485 1.19546 1.01983 0.97809 1.17150 0.77468 0.84912 0.83674 1.90878 1.47035 1.20189 1.85498 1.45870 1.67429 1.16790 1.05637 1.20935 0.95807 0.98773 0.79301 0.93081 1.21926 0.98294 1.00560 0.93279 1.22793 0.98229 0.94956 0.96558 0.87048 1.22929 0.93767 0.98661 0.99400 1.21867 0.95743 0.85852 0.93084 0.91868 1.22496 0.95375 1.00425 0.98152 1.44861 1.05770 1.00689 1.82555 1.19336 0.93405 0.83452 1.39281 0.91094 1.25438 0.96333 1.00851 1.03077 1.70165 1.05281 1.27732 1.56708 0.85209 0.77901 0.80889 0.76660 1.19425 1.22763 1.21416 1.21044 0.84828 0.91249 0.96465 0.94621 0.91599 0.91252 0.89341 0.90657 0.73308 0.75546 0.87654 0.91675 0.91828 0.87409 0.96131 0.89528 0.94837 0.97838 0.97980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.89 71.98 0.71 -2.88 16 2 C -0.06 -1.97 5.75 29.85 0.17 -1.80 16 3 C 0.14 3.91 6.04 42.10 0.25 4.17 16 4 N -0.50 -11.58 10.50 -190.40 -2.00 -13.57 16 5 C 0.05 0.65 12.22 130.60 1.60 2.25 16 6 S 0.23 3.44 22.35 -56.49 -1.26 2.17 16 7 C -0.32 -8.93 6.48 23.88 0.15 -8.77 16 8 C 0.58 20.56 7.73 86.45 0.67 21.23 16 9 O -0.56 -25.78 13.93 -4.32 -0.06 -25.84 16 10 N -0.71 -21.04 5.08 -446.02 -2.26 -23.30 16 11 C 0.16 5.64 2.08 45.09 0.09 5.73 16 12 H 0.05 2.60 5.40 -2.39 -0.01 2.58 16 13 C -0.10 -2.89 4.94 30.93 0.15 -2.74 16 14 C -0.11 -3.50 4.33 -9.05 -0.04 -3.53 16 15 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 16 C -0.11 -3.29 6.18 32.17 0.20 -3.09 16 17 C 0.14 5.61 4.30 45.79 0.20 5.80 16 18 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 19 C -0.12 -4.48 5.29 30.98 0.16 -4.32 16 20 N -0.61 -31.88 2.43 -664.47 -1.62 -33.50 16 21 C -0.23 -13.35 10.29 84.03 0.86 -12.48 16 22 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 23 C -0.06 -3.90 5.49 84.86 0.47 -3.44 16 24 N -0.95 -60.04 10.35 21.65 0.22 -59.82 16 25 Si 0.96 49.64 29.55 68.60 2.03 51.67 16 26 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -15.76 7.11 99.48 0.71 -15.05 16 28 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 29 C 0.19 9.30 4.10 86.85 0.36 9.66 16 30 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 34 H 0.08 2.81 6.01 -2.39 -0.01 2.79 16 35 H 0.25 0.96 8.06 -2.91 -0.02 0.93 16 36 H 0.41 8.50 7.78 -92.71 -0.72 7.78 16 37 H 0.11 2.00 7.97 -2.39 -0.02 1.98 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 2.31 7.75 -2.39 -0.02 2.29 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 2.39 8.00 -2.39 -0.02 2.38 16 43 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.00 0.20 6.15 -2.39 -0.01 0.19 16 45 H 0.00 0.11 7.40 -2.39 -0.02 0.09 16 Total: -1.00 -82.61 364.57 1.35 -81.26 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.29 Total: 15.15 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.01 Total: 5.79 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.66 Total: -130.20 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 2.03 Total: 51.67 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.26 Total: 2.17 kcal Total: -82.61 1.35 -81.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047084021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.530 kcal (2) G-P(sol) polarization free energy of solvation -82.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds