Wall clock time and date at job start Tue Mar 31 2020 18:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.28649 * 124.72295 * 120.00527 * 4 2 1 6 6 C 1.33556 * 115.76987 * 179.97438 * 5 4 2 7 7 C 1.47266 * 123.14383 * 179.97438 * 6 5 4 8 8 O 1.21631 * 120.00232 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99717 * 359.97438 * 7 6 5 10 10 C 1.46665 * 125.33835 * 180.02562 * 9 7 6 11 11 C 1.53733 * 107.94604 * 180.54300 * 10 9 7 12 12 H 1.09000 * 112.55999 * 139.71732 * 11 10 9 13 13 C 1.53683 * 109.33955 * 266.25374 * 11 10 9 14 14 N 1.46640 * 108.00918 * 127.55611 * 13 11 10 15 15 C 1.36938 * 125.33410 * 180.81420 * 14 13 11 16 16 H 1.07994 * 120.00600 * 180.02562 * 15 14 13 17 17 C 1.38822 * 119.99446 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00271 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99584 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47354 * 89.99553 * 19 17 15 21 21 H 1.48504 * 109.47051 * 209.99925 * 19 17 15 22 22 H 1.48502 * 109.47248 * 329.99326 * 19 17 15 23 23 C 1.46743 * 109.34120 * 0.83121 * 14 13 11 24 24 C 1.53932 * 106.71945 * 341.66531 * 23 14 13 25 25 H 1.09000 * 113.01501 * 150.83741 * 24 23 14 26 26 C 1.46784 * 125.33938 * 359.69597 * 9 7 6 27 27 C 1.35212 * 113.71640 * 359.97438 * 6 5 4 28 28 S 1.70774 * 124.72023 * 299.69858 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08998 * 109.77478 * 300.16405 * 10 9 7 37 37 H 1.09000 * 109.77176 * 60.92286 * 10 9 7 38 38 H 1.09007 * 109.76128 * 247.19228 * 13 11 10 39 39 H 1.08998 * 109.76484 * 7.91166 * 13 11 10 40 40 H 0.96998 * 120.00313 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.01155 * 222.34155 * 23 14 13 42 42 H 1.09006 * 110.00807 * 100.97794 * 23 14 13 43 43 H 1.09000 * 110.02584 * 280.77512 * 26 9 7 44 44 H 1.08993 * 110.02282 * 42.18768 * 26 9 7 45 45 H 1.07995 * 125.58346 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7751 -1.7606 1.2184 6 6 3.1173 -2.2436 2.4156 7 6 3.9612 -3.4377 2.5909 8 8 4.2383 -3.8278 3.7091 9 7 4.4265 -4.0983 1.5122 10 6 5.2721 -5.2960 1.5504 11 6 5.5776 -5.7066 0.1008 12 1 6.6082 -6.0356 -0.0323 13 6 4.5482 -6.7505 -0.3602 14 7 3.9668 -6.2866 -1.6239 15 6 2.9987 -6.9412 -2.3377 16 1 2.6313 -6.5200 -3.2618 17 6 2.4894 -8.1462 -1.8734 18 7 2.9374 -8.6599 -0.7475 19 14 1.1693 -9.0395 -2.8475 20 1 1.8097 -9.9675 -3.8138 21 1 0.3053 -9.8111 -1.9182 22 1 0.3431 -8.0499 -3.5847 23 6 4.5851 -5.0113 -2.0042 24 6 5.2389 -4.4398 -0.7332 25 1 6.1090 -3.8181 -0.9442 26 6 4.1608 -3.7358 0.1148 27 6 2.6165 -1.5338 3.4518 28 16 1.7009 -0.2287 2.8351 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 6.2018 -5.0744 2.0745 37 1 4.7452 -6.1033 2.0591 38 1 5.0402 -7.7114 -0.5117 39 1 3.7647 -6.8521 0.3907 40 1 2.5818 -9.5021 -0.4232 41 1 3.8246 -4.3237 -2.3740 42 1 5.3423 -5.1778 -2.7705 43 1 3.1684 -4.0791 -0.1776 44 1 4.2347 -2.6557 -0.0111 45 1 2.7728 -1.7532 4.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049117731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:40 Heat of formation + Delta-G solvation = 38.991464 kcal Electronic energy + Delta-G solvation = -27369.236979 eV Core-core repulsion = 23707.226913 eV Total energy + Delta-G solvation = -3662.010066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67450 -39.37927 -37.91919 -35.71564 -34.87352 -32.22268 -30.48452 -30.03151 -29.33644 -27.51526 -26.46141 -25.36824 -25.05011 -23.58906 -21.99729 -20.60841 -20.00865 -19.24379 -19.20256 -18.15308 -16.81392 -16.29211 -15.96766 -15.78292 -15.33638 -14.88104 -14.52063 -14.46488 -14.14319 -13.67911 -13.47866 -13.22726 -13.08282 -12.80209 -12.68655 -12.45866 -12.20925 -12.01669 -11.93912 -11.76558 -11.53332 -11.42819 -11.34552 -11.22328 -10.86552 -10.79346 -10.35940 -10.12398 -10.06374 -9.93436 -9.86253 -9.75840 -9.60364 -9.48929 -9.00693 -8.57541 -8.19422 -6.80012 -5.69617 -3.02998 0.43102 1.10104 1.49852 1.99853 3.29249 3.41049 3.45783 3.48082 3.49286 3.78145 4.49942 4.51648 4.66089 4.76313 4.87536 5.02930 5.11569 5.17080 5.25307 5.26017 5.38987 5.45708 5.51254 5.54276 5.63002 5.67438 5.73747 5.78829 5.87895 5.89513 5.91705 6.05733 6.18217 6.29286 6.38312 6.53219 6.64347 6.68495 6.71406 6.90552 7.38401 7.59089 7.61678 7.81361 7.84820 8.29362 8.35111 9.24633 9.85474 10.49601 11.41928 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003733 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.240886 B = 7498.274265 C = 8497.245303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.147 4.147 4 C 0.034 3.966 5 N -0.432 5.432 6 C 0.023 3.977 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.587 5.587 10 C 0.120 3.880 11 C -0.124 4.124 12 H 0.090 0.910 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.147 3.853 24 C -0.115 4.115 25 H 0.087 0.913 26 C 0.122 3.878 27 C -0.230 4.230 28 S 0.196 5.804 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.252 0.748 41 H 0.038 0.962 42 H 0.019 0.981 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 21.428 4.377 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.043 4.043 3 C -0.205 4.205 4 C -0.246 4.246 5 N -0.147 5.147 6 C -0.112 4.112 7 C 0.386 3.614 8 O -0.425 6.425 9 N -0.318 5.318 10 C -0.002 4.002 11 C -0.143 4.143 12 H 0.109 0.891 13 C 0.061 3.939 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.020 3.980 24 C -0.135 4.135 25 H 0.105 0.895 26 C -0.001 4.001 27 C -0.372 4.372 28 S 0.454 5.546 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.302 21.596 4.985 22.202 hybrid contribution -0.113 -1.537 -0.306 1.571 sum -1.415 20.059 4.680 20.646 Atomic orbital electron populations 1.21940 0.93040 1.03092 1.02602 1.19851 0.96217 0.95304 0.92914 1.21934 1.01850 0.94074 1.02663 1.27304 1.00600 0.97100 0.99584 1.67182 1.12069 1.09744 1.25691 1.20383 1.03740 0.99787 0.87275 1.16652 0.79499 0.81619 0.83624 1.90788 1.60013 1.68051 1.23682 1.48034 1.49115 1.27888 1.06721 1.21884 0.93753 0.86824 0.97751 1.23158 1.01285 0.97405 0.92499 0.89137 1.21096 0.92116 0.92449 0.88247 1.44202 1.44422 1.20386 1.23828 1.19031 1.11936 1.01686 1.03013 0.90409 1.24793 1.00112 0.97902 0.97522 1.69957 1.45259 1.20335 1.21292 0.86134 0.81261 0.79642 0.78813 1.21601 1.21738 1.20721 1.21143 0.95018 0.88718 0.93074 1.23024 0.97482 0.96186 0.96828 0.89460 1.22275 0.99231 0.99994 0.78569 1.26549 1.04238 1.00571 1.05842 1.82636 1.45957 1.25462 1.00582 0.91661 0.91013 0.92337 0.87623 0.92321 0.91931 0.91032 0.92157 0.90725 0.93769 0.93172 0.93755 0.94417 0.96384 0.90416 0.89720 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.09 37.16 0.34 -0.76 16 2 C -0.02 -0.18 3.34 -91.77 -0.31 -0.49 16 3 C -0.15 -0.94 9.08 37.16 0.34 -0.61 16 4 C 0.03 0.39 6.00 -13.61 -0.08 0.30 16 5 N -0.43 -6.35 7.41 -8.51 -0.06 -6.42 16 6 C 0.02 0.36 6.61 -84.53 -0.56 -0.20 16 7 C 0.60 11.33 7.82 -12.59 -0.10 11.23 16 8 O -0.55 -11.41 17.02 5.25 0.09 -11.32 16 9 N -0.59 -10.99 3.31 -173.47 -0.57 -11.56 16 10 C 0.12 2.23 6.23 -3.57 -0.02 2.20 16 11 C -0.12 -2.33 4.02 -88.61 -0.36 -2.68 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 13 C 0.19 4.50 4.75 -3.61 -0.02 4.49 16 14 N -0.60 -15.23 3.37 -171.93 -0.58 -15.81 16 15 C -0.23 -6.34 10.25 -15.06 -0.15 -6.50 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -27.26 10.25 55.49 0.57 -26.69 16 19 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.15 2.98 6.37 -3.42 -0.02 2.96 16 24 C -0.12 -2.01 4.19 -88.24 -0.37 -2.38 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 26 C 0.12 2.17 5.07 -3.27 -0.02 2.15 16 27 C -0.23 -2.95 10.62 29.66 0.31 -2.64 16 28 S 0.20 1.85 22.22 -107.50 -2.39 -0.54 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.51 7.44 -51.93 -0.39 1.13 16 38 H 0.04 1.19 7.45 -51.93 -0.39 0.80 16 39 H 0.05 1.38 6.51 -51.93 -0.34 1.04 16 40 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 41 H 0.04 0.75 7.95 -51.93 -0.41 0.33 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 1.62 7.72 -51.93 -0.40 1.22 16 44 H 0.08 1.38 6.31 -51.93 -0.33 1.05 16 45 H 0.19 2.19 8.03 -52.49 -0.42 1.77 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -33.05 370.02 -10.35 -43.41 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.85 Total: -0.68 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.11 Total: 6.81 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.65 Total: -60.48 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.39 Total: -0.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.05 -10.35 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049117731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.397 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds