Wall clock time and date at job start Tue Mar 31 2020 18:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.28649 * 124.72295 * 120.00527 * 4 2 1 6 6 C 1.33556 * 115.76987 * 179.97438 * 5 4 2 7 7 C 1.47266 * 123.14383 * 179.97438 * 6 5 4 8 8 O 1.21631 * 120.00232 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99717 * 359.97438 * 7 6 5 10 10 C 1.46665 * 125.33835 * 180.02562 * 9 7 6 11 11 C 1.53733 * 107.94604 * 180.54300 * 10 9 7 12 12 H 1.09000 * 112.55999 * 139.71732 * 11 10 9 13 13 C 1.53683 * 109.33955 * 266.25374 * 11 10 9 14 14 N 1.46640 * 108.00918 * 127.55611 * 13 11 10 15 15 C 1.36938 * 125.33410 * 180.81420 * 14 13 11 16 16 H 1.07994 * 120.00600 * 180.02562 * 15 14 13 17 17 C 1.38822 * 119.99446 * 0.02562 * 15 14 13 18 18 N 1.31616 * 120.00271 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99584 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47354 * 89.99553 * 19 17 15 21 21 H 1.48504 * 109.47051 * 209.99925 * 19 17 15 22 22 H 1.48502 * 109.47248 * 329.99326 * 19 17 15 23 23 C 1.46743 * 109.34120 * 0.83121 * 14 13 11 24 24 C 1.53932 * 106.71945 * 341.66531 * 23 14 13 25 25 H 1.09000 * 113.01501 * 150.83741 * 24 23 14 26 26 C 1.46784 * 125.33938 * 359.69597 * 9 7 6 27 27 C 1.35212 * 113.71640 * 359.97438 * 6 5 4 28 28 S 1.70774 * 124.72023 * 299.69858 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 36 36 H 1.08998 * 109.77478 * 300.16405 * 10 9 7 37 37 H 1.09000 * 109.77176 * 60.92286 * 10 9 7 38 38 H 1.09007 * 109.76128 * 247.19228 * 13 11 10 39 39 H 1.08998 * 109.76484 * 7.91166 * 13 11 10 40 40 H 0.96998 * 120.00313 * 180.02562 * 18 17 15 41 41 H 1.08999 * 110.01155 * 222.34155 * 23 14 13 42 42 H 1.09006 * 110.00807 * 100.97794 * 23 14 13 43 43 H 1.09000 * 110.02584 * 280.77512 * 26 9 7 44 44 H 1.08993 * 110.02282 * 42.18768 * 26 9 7 45 45 H 1.07995 * 125.58346 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7751 -1.7606 1.2184 6 6 3.1173 -2.2436 2.4156 7 6 3.9612 -3.4377 2.5909 8 8 4.2383 -3.8278 3.7091 9 7 4.4265 -4.0983 1.5122 10 6 5.2721 -5.2960 1.5504 11 6 5.5776 -5.7066 0.1008 12 1 6.6082 -6.0356 -0.0323 13 6 4.5482 -6.7505 -0.3602 14 7 3.9668 -6.2866 -1.6239 15 6 2.9987 -6.9412 -2.3377 16 1 2.6313 -6.5200 -3.2618 17 6 2.4894 -8.1462 -1.8734 18 7 2.9374 -8.6599 -0.7475 19 14 1.1693 -9.0395 -2.8475 20 1 1.8097 -9.9675 -3.8138 21 1 0.3053 -9.8111 -1.9182 22 1 0.3431 -8.0499 -3.5847 23 6 4.5851 -5.0113 -2.0042 24 6 5.2389 -4.4398 -0.7332 25 1 6.1090 -3.8181 -0.9442 26 6 4.1608 -3.7358 0.1148 27 6 2.6165 -1.5338 3.4518 28 16 1.7009 -0.2287 2.8351 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 6.2018 -5.0744 2.0745 37 1 4.7452 -6.1033 2.0591 38 1 5.0402 -7.7114 -0.5117 39 1 3.7647 -6.8521 0.3907 40 1 2.5818 -9.5021 -0.4232 41 1 3.8246 -4.3237 -2.3740 42 1 5.3423 -5.1778 -2.7705 43 1 3.1684 -4.0791 -0.1776 44 1 4.2347 -2.6557 -0.0111 45 1 2.7728 -1.7532 4.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049117731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:39 Heat of formation + Delta-G solvation = 18.354344 kcal Electronic energy + Delta-G solvation = -27370.131872 eV Core-core repulsion = 23707.226913 eV Total energy + Delta-G solvation = -3662.904959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94823 -40.69598 -39.37405 -36.62824 -36.43059 -34.13656 -32.06457 -31.14426 -31.06452 -28.03525 -27.97433 -27.06828 -26.44221 -24.98196 -23.25250 -21.85540 -21.41874 -20.81168 -20.40737 -19.36815 -18.75609 -17.70903 -17.13749 -16.98884 -16.72728 -16.26733 -16.11452 -15.54576 -15.45252 -15.15867 -14.72619 -14.48907 -14.33817 -14.23378 -13.76814 -13.65895 -13.58411 -13.31382 -13.08084 -13.00550 -12.95358 -12.76121 -12.67392 -12.59980 -12.13439 -12.00510 -11.92433 -11.88286 -11.87537 -11.57598 -11.39780 -11.32400 -10.70160 -10.67750 -10.62532 -9.99557 -9.63203 -8.87626 -7.85253 -5.20254 -0.55166 0.22816 0.55838 0.86006 1.43822 1.46075 1.54415 1.94593 2.19989 2.48969 2.83595 3.31005 3.33572 3.56670 3.65476 3.84348 3.90624 3.99915 4.07480 4.17594 4.18117 4.28364 4.30544 4.45766 4.49736 4.61797 4.74574 4.79243 4.81421 4.82737 4.92361 4.93655 4.97248 5.06139 5.10852 5.16860 5.27710 5.33367 5.37953 5.39306 5.47347 5.61973 5.75503 6.20642 6.32958 6.44977 6.94124 7.10681 7.80084 8.41960 9.25030 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003733 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.240886 B = 7498.274265 C = 8497.245303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.143 4.143 4 C 0.020 3.980 5 N -0.464 5.464 6 C -0.011 4.011 7 C 0.593 3.407 8 O -0.578 6.578 9 N -0.594 5.594 10 C 0.123 3.877 11 C -0.111 4.111 12 H 0.120 0.880 13 C 0.200 3.800 14 N -0.623 5.623 15 C -0.238 4.238 16 H 0.086 0.914 17 C -0.068 4.068 18 N -0.953 5.953 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.299 1.299 22 H -0.267 1.267 23 C 0.142 3.858 24 C -0.098 4.098 25 H 0.133 0.867 26 C 0.136 3.864 27 C -0.240 4.240 28 S 0.298 5.702 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.044 0.956 38 H 0.008 0.992 39 H 0.004 0.996 40 H 0.244 0.756 41 H 0.044 0.956 42 H 0.034 0.966 43 H 0.040 0.960 44 H 0.105 0.895 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.142 24.959 3.508 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 C -0.201 4.201 4 C -0.259 4.259 5 N -0.179 5.179 6 C -0.146 4.146 7 C 0.381 3.619 8 O -0.460 6.460 9 N -0.324 5.324 10 C 0.000 4.000 11 C -0.131 4.131 12 H 0.138 0.862 13 C 0.075 3.925 14 N -0.349 5.349 15 C -0.367 4.367 16 H 0.104 0.896 17 C -0.260 4.260 18 N -0.602 5.602 19 Si 0.805 3.195 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.191 1.191 23 C 0.017 3.983 24 C -0.118 4.118 25 H 0.151 0.849 26 C 0.013 3.987 27 C -0.383 4.383 28 S 0.557 5.443 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.123 0.877 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.537 25.184 4.078 25.558 hybrid contribution -0.134 -2.525 -0.010 2.528 sum -1.671 22.659 4.068 23.082 Atomic orbital electron populations 1.21957 0.92017 1.02263 1.04285 1.20009 0.96934 0.96268 0.91249 1.21933 1.01487 0.92460 1.04195 1.27873 0.99626 0.96394 1.02017 1.67107 1.13867 1.11338 1.25568 1.20075 1.05630 1.00042 0.88850 1.17203 0.79291 0.82340 0.83088 1.90744 1.61288 1.69285 1.24641 1.48149 1.49272 1.27806 1.07188 1.21796 0.94381 0.86312 0.97482 1.23029 1.00939 0.96408 0.92724 0.86193 1.20738 0.91776 0.92931 0.87104 1.44505 1.44335 1.22139 1.23937 1.19463 1.12165 1.01798 1.03282 0.89633 1.25649 1.02640 0.99076 0.98673 1.70208 1.46664 1.20330 1.23013 0.85103 0.78639 0.78463 0.77316 1.21046 1.22600 1.19139 1.21347 0.95397 0.86767 0.94773 1.23091 0.98396 0.95623 0.94678 0.84949 1.22114 0.97425 1.00970 0.78163 1.26871 1.03941 1.01543 1.05917 1.82231 1.42740 1.21851 0.97469 0.93706 0.89122 0.90936 0.88837 0.91090 0.92522 0.89243 0.89785 0.93748 0.97410 0.97783 0.94677 0.93817 0.94827 0.94203 0.87734 0.78933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.09 71.98 0.65 -1.16 16 2 C -0.02 -0.34 3.34 -11.54 -0.04 -0.38 16 3 C -0.14 -1.37 9.08 71.98 0.65 -0.71 16 4 C 0.02 0.42 6.00 88.57 0.53 0.95 16 5 N -0.46 -13.40 7.41 -180.83 -1.34 -14.74 16 6 C -0.01 -0.36 6.61 40.56 0.27 -0.09 16 7 C 0.59 22.99 7.82 86.62 0.68 23.67 16 8 O -0.58 -24.97 17.02 -4.13 -0.07 -25.04 16 9 N -0.59 -22.67 3.31 -820.99 -2.72 -25.39 16 10 C 0.12 4.65 6.23 86.59 0.54 5.19 16 11 C -0.11 -4.17 4.02 -9.49 -0.04 -4.20 16 12 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 13 C 0.20 10.15 4.75 86.58 0.41 10.56 16 14 N -0.62 -32.21 3.37 -697.87 -2.35 -34.56 16 15 C -0.24 -13.49 10.25 84.04 0.86 -12.63 16 16 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 17 C -0.07 -3.95 5.48 84.87 0.47 -3.48 16 18 N -0.95 -59.33 10.25 21.65 0.22 -59.10 16 19 Si 0.98 46.82 29.55 68.60 2.03 48.84 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C 0.14 5.63 6.37 86.65 0.55 6.18 16 24 C -0.10 -3.25 4.19 -9.25 -0.04 -3.29 16 25 H 0.13 3.33 8.14 -2.39 -0.02 3.31 16 26 C 0.14 4.81 5.07 86.72 0.44 5.25 16 27 C -0.24 -5.92 10.62 67.12 0.71 -5.21 16 28 S 0.30 4.80 22.22 -56.49 -1.26 3.55 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.68 7.92 -2.38 -0.02 0.66 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 0.51 7.90 -2.39 -0.02 0.49 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.04 1.93 7.44 -2.39 -0.02 1.91 16 38 H 0.01 0.44 7.45 -2.38 -0.02 0.42 16 39 H 0.00 0.24 6.51 -2.39 -0.02 0.22 16 40 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 41 H 0.04 1.68 7.95 -2.39 -0.02 1.66 16 42 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.04 1.71 7.72 -2.39 -0.02 1.70 16 44 H 0.10 3.31 6.31 -2.39 -0.02 3.29 16 45 H 0.19 4.38 8.03 -2.91 -0.02 4.35 16 Total: -1.00 -76.92 370.02 2.15 -74.77 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.99 Total: 11.03 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.65 Total: 20.65 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -6.19 Total: -133.80 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.04 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -1.26 Total: 3.55 kcal Total: -76.92 2.15 -74.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049117731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.124 kcal (2) G-P(sol) polarization free energy of solvation -76.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds