Wall clock time and date at job start Tue Mar 31 2020 18:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47325 * 2 1 4 4 N 1.30946 * 122.90244 * 269.71046 * 3 2 1 5 5 C 1.29427 * 117.35808 * 180.27125 * 4 3 2 6 6 S 1.70947 * 110.39657 * 359.97438 * 5 4 3 7 7 C 1.35661 * 122.90079 * 90.00641 * 3 2 1 8 8 C 1.46683 * 126.13355 * 359.70423 * 7 3 2 9 9 O 1.21681 * 119.99787 * 313.99495 * 8 7 3 10 10 N 1.34775 * 119.99760 * 133.99052 * 8 7 3 11 11 C 1.45733 * 117.75843 * 184.96606 * 10 8 7 12 12 C 1.52449 * 109.88508 * 142.10431 * 11 10 8 13 13 C 1.52940 * 108.68366 * 53.29540 * 12 11 10 14 14 C 1.52925 * 109.79060 * 294.25682 * 13 12 11 15 15 H 1.09004 * 111.26989 * 293.34990 * 14 13 12 16 16 C 1.44189 * 117.75829 * 5.23534 * 10 8 7 17 17 H 1.08998 * 109.23147 * 332.58044 * 16 10 8 18 18 C 1.54074 * 111.76349 * 93.48328 * 16 10 8 19 19 C 1.54053 * 103.74511 * 153.24768 * 18 16 10 20 20 N 1.46884 * 107.70833 * 342.87055 * 19 18 16 21 21 C 1.36936 * 125.57775 * 177.06005 * 20 19 18 22 22 H 1.08002 * 119.99661 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00499 * 359.97438 * 21 20 19 24 24 N 1.31621 * 119.99638 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00427 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46985 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47438 * 119.99573 * 25 23 21 28 28 H 1.48500 * 109.47052 * 239.99687 * 25 23 21 29 29 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46943 * 299.99966 * 1 2 3 31 31 H 1.09000 * 109.47230 * 59.99581 * 1 2 3 32 32 H 1.09007 * 109.46943 * 240.00034 * 2 1 3 33 33 H 1.09000 * 109.47230 * 120.00419 * 2 1 3 34 34 H 1.08000 * 124.80255 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.45903 * 261.16459 * 11 10 8 36 36 H 1.09004 * 109.45363 * 21.11162 * 11 10 8 37 37 H 1.08998 * 109.32987 * 293.65304 * 12 11 10 38 38 H 1.09005 * 109.91361 * 173.27908 * 12 11 10 39 39 H 1.08998 * 109.41637 * 174.16393 * 13 12 11 40 40 H 1.08997 * 109.36807 * 54.32266 * 13 12 11 41 41 H 1.09006 * 110.56647 * 271.80674 * 18 16 10 42 42 H 1.08994 * 110.57419 * 34.67373 * 18 16 10 43 43 H 1.08999 * 109.81324 * 102.42473 * 19 18 16 44 44 H 1.09001 * 109.80848 * 223.25207 * 19 18 16 45 45 H 0.97003 * 120.00265 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2747 2.0896 -1.0994 5 6 2.7087 3.3025 -0.9743 6 16 2.8519 3.7166 0.6780 7 6 2.2781 2.1155 1.1390 8 6 2.0976 1.6227 2.5087 9 8 1.0790 1.0305 2.8129 10 7 3.0598 1.8258 3.4303 11 6 2.8800 1.2211 4.7440 12 6 4.2197 0.7213 5.2725 13 6 5.2265 1.8714 5.2213 14 6 5.4964 2.2588 3.7667 15 1 6.0106 1.4592 3.2334 16 6 4.1938 2.6314 3.0508 17 1 4.3431 2.5564 1.9736 18 6 3.9966 4.1111 3.4322 19 6 5.4333 4.6374 3.6117 20 7 6.3196 3.4755 3.7596 21 6 7.6825 3.5236 3.8836 22 1 8.2478 2.6094 3.9881 23 6 8.3374 4.7474 3.8748 24 7 7.6485 5.8616 3.7469 25 14 10.1965 4.8132 4.0446 26 1 10.7308 3.4336 4.1739 27 1 10.7808 5.4601 2.8425 28 1 10.5557 5.5980 5.2530 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.9467 3.9600 -1.7974 35 1 2.4913 1.9672 5.4370 36 1 2.1748 0.3932 4.6691 37 1 4.5701 -0.1004 4.6479 38 1 4.1083 0.3776 6.3010 39 1 6.1586 1.5583 5.6917 40 1 4.8214 2.7305 5.7559 41 1 3.4892 4.6487 2.6311 42 1 3.4385 4.1952 4.3646 43 1 5.7266 5.2167 2.7362 44 1 5.4892 5.2619 4.5033 45 1 8.1061 6.7169 3.7411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049510460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:34 Heat of formation + Delta-G solvation = 41.481047 kcal Electronic energy + Delta-G solvation = -28211.936417 eV Core-core repulsion = 24550.034307 eV Total energy + Delta-G solvation = -3661.902110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.79633 -39.72989 -38.03123 -35.21330 -33.54134 -33.24996 -32.19525 -29.94572 -29.13112 -28.37011 -26.19264 -24.67988 -24.48327 -23.27267 -22.22468 -21.46109 -20.19332 -19.35587 -18.46741 -17.90855 -17.04508 -16.88980 -16.09930 -15.26361 -15.25640 -14.78477 -14.57616 -14.44298 -14.03213 -13.86740 -13.77140 -13.61193 -13.34586 -13.06096 -12.69698 -12.40763 -12.17289 -12.06583 -11.96318 -11.63423 -11.21413 -11.13013 -11.01412 -10.88226 -10.85320 -10.75389 -10.55882 -10.23938 -10.17092 -10.02043 -9.91917 -9.74867 -9.47225 -9.19276 -8.83882 -8.69350 -8.42428 -6.97470 -5.81633 -3.16556 0.36629 1.19747 1.63226 2.51954 2.91888 3.17348 3.33774 3.40204 3.41997 4.11180 4.37809 4.55707 4.93726 4.97924 5.00257 5.13306 5.18595 5.22751 5.35782 5.40738 5.41696 5.45497 5.51177 5.52964 5.61366 5.79097 5.89999 5.97786 5.98663 6.05568 6.08520 6.13578 6.15641 6.23317 6.30717 6.35427 6.43358 6.66574 6.78971 6.93040 7.38833 7.46550 7.47484 7.63275 7.71713 8.11697 8.15910 9.10620 9.70615 10.34259 11.29505 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.004233 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.137853 B = 6613.761410 C = 7663.641954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.131 3.869 4 N -0.476 5.476 5 C 0.003 3.997 6 S 0.216 5.784 7 C -0.294 4.294 8 C 0.591 3.409 9 O -0.528 6.528 10 N -0.577 5.577 11 C 0.118 3.882 12 C -0.132 4.132 13 C -0.131 4.131 14 C 0.165 3.835 15 H 0.056 0.944 16 C 0.116 3.884 17 H 0.088 0.912 18 C -0.155 4.155 19 C 0.180 3.820 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.080 0.920 23 C -0.004 4.004 24 N -0.920 5.920 25 Si 0.912 3.088 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.201 0.799 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.429 -6.836 -4.396 14.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 C -0.007 4.007 4 N -0.189 5.189 5 C -0.291 4.291 6 S 0.473 5.527 7 C -0.418 4.418 8 C 0.377 3.623 9 O -0.407 6.407 10 N -0.308 5.308 11 C -0.003 4.003 12 C -0.171 4.171 13 C -0.172 4.172 14 C 0.056 3.944 15 H 0.074 0.926 16 C 0.010 3.990 17 H 0.106 0.894 18 C -0.195 4.195 19 C 0.055 3.945 20 N -0.318 5.318 21 C -0.356 4.356 22 H 0.097 0.903 23 C -0.200 4.200 24 N -0.567 5.567 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.218 0.782 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.460 -6.180 -4.268 13.702 hybrid contribution 0.897 -0.362 0.000 0.967 sum -10.564 -6.542 -4.268 13.138 Atomic orbital electron populations 1.21687 0.93678 1.01952 1.02640 1.20146 0.96933 0.88547 1.03154 1.20521 0.96810 0.98262 0.85124 1.66104 1.15150 1.06435 1.31250 1.28923 1.01184 0.96343 1.02673 1.84839 1.56016 1.11336 1.00493 1.25523 1.16857 1.00283 0.99102 1.16902 0.83438 0.79255 0.82713 1.90775 1.27304 1.42639 1.79949 1.46977 1.20752 1.50382 1.12672 1.21235 0.98297 0.98225 0.82587 1.21754 0.95076 0.99265 1.00992 1.22130 0.98385 0.96965 0.99683 1.20706 0.89009 0.91403 0.93234 0.92633 1.21583 0.86508 0.90901 1.00033 0.89440 1.23266 1.01420 0.94476 1.00341 1.21068 0.82740 0.89343 1.01372 1.44317 1.02293 0.99413 1.85773 1.19044 0.80086 0.93005 1.43471 0.90263 1.24782 0.98099 0.95308 1.01850 1.69955 1.33513 0.96861 1.56343 0.86052 0.84926 0.77471 0.77338 1.20478 1.21696 1.21727 0.92210 0.91206 0.92893 0.90203 0.90209 0.78222 0.92055 0.89248 0.91796 0.90831 0.91611 0.91887 0.91982 0.91661 0.92565 0.93877 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.86 37.16 0.37 -1.29 16 2 C -0.05 -0.61 5.76 -27.88 -0.16 -0.77 16 3 C 0.13 1.90 6.04 -83.89 -0.51 1.39 16 4 N -0.48 -6.71 10.50 -11.53 -0.12 -6.83 16 5 C 0.00 0.04 12.22 51.75 0.63 0.67 16 6 S 0.22 2.86 17.53 -107.50 -1.89 0.98 16 7 C -0.29 -4.42 5.20 -37.10 -0.19 -4.61 16 8 C 0.59 9.46 6.85 -12.85 -0.09 9.38 16 9 O -0.53 -9.13 14.49 5.21 0.08 -9.06 16 10 N -0.58 -8.96 2.81 -169.47 -0.48 -9.44 16 11 C 0.12 1.64 6.18 -4.74 -0.03 1.61 16 12 C -0.13 -1.76 6.07 -27.04 -0.16 -1.93 16 13 C -0.13 -2.21 5.31 -26.80 -0.14 -2.35 16 14 C 0.17 3.14 3.23 -67.63 -0.22 2.93 16 15 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 16 C 0.12 1.95 2.29 -68.48 -0.16 1.80 16 17 H 0.09 1.52 5.02 -44.71 -0.22 1.29 16 18 C -0.15 -2.71 6.00 -25.62 -0.15 -2.86 16 19 C 0.18 4.00 5.38 -3.28 -0.02 3.98 16 20 N -0.59 -13.80 2.93 -164.32 -0.48 -14.28 16 21 C -0.23 -5.90 10.28 -15.06 -0.15 -6.06 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 23 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 24 N -0.92 -25.38 10.29 55.49 0.57 -24.81 16 25 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.94 7.04 -51.93 -0.37 0.58 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.04 7.40 -51.93 -0.38 0.66 16 34 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 41 H 0.06 0.99 5.28 -41.34 -0.22 0.77 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.38 7.25 -51.93 -0.38 1.00 16 44 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 45 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 357.66 15.07 5.39 5.39 Total: -1.00 -29.41 357.66 -9.55 -38.96 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.52 Total: 1.32 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -1.08 Total: 1.67 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.51 Total: -55.36 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.89 Total: 0.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.41 -9.55 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049510460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.444 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds