Wall clock time and date at job start Tue Mar 31 2020 18:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47325 * 2 1 4 4 N 1.30946 * 122.90244 * 269.71046 * 3 2 1 5 5 C 1.29427 * 117.35808 * 180.27125 * 4 3 2 6 6 S 1.70947 * 110.39657 * 359.97438 * 5 4 3 7 7 C 1.35661 * 122.90079 * 90.00641 * 3 2 1 8 8 C 1.46683 * 126.13355 * 359.70423 * 7 3 2 9 9 O 1.21681 * 119.99787 * 313.99495 * 8 7 3 10 10 N 1.34775 * 119.99760 * 133.99052 * 8 7 3 11 11 C 1.45733 * 117.75843 * 184.96606 * 10 8 7 12 12 C 1.52449 * 109.88508 * 142.10431 * 11 10 8 13 13 C 1.52940 * 108.68366 * 53.29540 * 12 11 10 14 14 C 1.52925 * 109.79060 * 294.25682 * 13 12 11 15 15 H 1.09004 * 111.26989 * 293.34990 * 14 13 12 16 16 C 1.44189 * 117.75829 * 5.23534 * 10 8 7 17 17 H 1.08998 * 109.23147 * 332.58044 * 16 10 8 18 18 C 1.54074 * 111.76349 * 93.48328 * 16 10 8 19 19 C 1.54053 * 103.74511 * 153.24768 * 18 16 10 20 20 N 1.46884 * 107.70833 * 342.87055 * 19 18 16 21 21 C 1.36936 * 125.57775 * 177.06005 * 20 19 18 22 22 H 1.08002 * 119.99661 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00499 * 359.97438 * 21 20 19 24 24 N 1.31621 * 119.99638 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00427 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46985 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47438 * 119.99573 * 25 23 21 28 28 H 1.48500 * 109.47052 * 239.99687 * 25 23 21 29 29 H 1.08995 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46943 * 299.99966 * 1 2 3 31 31 H 1.09000 * 109.47230 * 59.99581 * 1 2 3 32 32 H 1.09007 * 109.46943 * 240.00034 * 2 1 3 33 33 H 1.09000 * 109.47230 * 120.00419 * 2 1 3 34 34 H 1.08000 * 124.80255 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.45903 * 261.16459 * 11 10 8 36 36 H 1.09004 * 109.45363 * 21.11162 * 11 10 8 37 37 H 1.08998 * 109.32987 * 293.65304 * 12 11 10 38 38 H 1.09005 * 109.91361 * 173.27908 * 12 11 10 39 39 H 1.08998 * 109.41637 * 174.16393 * 13 12 11 40 40 H 1.08997 * 109.36807 * 54.32266 * 13 12 11 41 41 H 1.09006 * 110.56647 * 271.80674 * 18 16 10 42 42 H 1.08994 * 110.57419 * 34.67373 * 18 16 10 43 43 H 1.08999 * 109.81324 * 102.42473 * 19 18 16 44 44 H 1.09001 * 109.80848 * 223.25207 * 19 18 16 45 45 H 0.97003 * 120.00265 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2747 2.0896 -1.0994 5 6 2.7087 3.3025 -0.9743 6 16 2.8519 3.7166 0.6780 7 6 2.2781 2.1155 1.1390 8 6 2.0976 1.6227 2.5087 9 8 1.0790 1.0305 2.8129 10 7 3.0598 1.8258 3.4303 11 6 2.8800 1.2211 4.7440 12 6 4.2197 0.7213 5.2725 13 6 5.2265 1.8714 5.2213 14 6 5.4964 2.2588 3.7667 15 1 6.0106 1.4592 3.2334 16 6 4.1938 2.6314 3.0508 17 1 4.3431 2.5564 1.9736 18 6 3.9966 4.1111 3.4322 19 6 5.4333 4.6374 3.6117 20 7 6.3196 3.4755 3.7596 21 6 7.6825 3.5236 3.8836 22 1 8.2478 2.6094 3.9881 23 6 8.3374 4.7474 3.8748 24 7 7.6485 5.8616 3.7469 25 14 10.1965 4.8132 4.0446 26 1 10.7308 3.4336 4.1739 27 1 10.7808 5.4601 2.8425 28 1 10.5557 5.5980 5.2530 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.9467 3.9600 -1.7974 35 1 2.4913 1.9672 5.4370 36 1 2.1748 0.3932 4.6691 37 1 4.5701 -0.1004 4.6479 38 1 4.1083 0.3776 6.3010 39 1 6.1586 1.5583 5.6917 40 1 4.8214 2.7305 5.7559 41 1 3.4892 4.6487 2.6311 42 1 3.4385 4.1952 4.3646 43 1 5.7266 5.2167 2.7362 44 1 5.4892 5.2619 4.5033 45 1 8.1061 6.7169 3.7411 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049510460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:33 Heat of formation + Delta-G solvation = 24.791115 kcal Electronic energy + Delta-G solvation = -28212.660146 eV Core-core repulsion = 24550.034307 eV Total energy + Delta-G solvation = -3662.625840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05297 -40.89378 -39.42501 -36.71234 -34.69877 -34.40298 -34.00439 -31.15512 -30.78853 -29.81290 -27.27549 -26.48722 -25.80309 -24.26155 -23.50812 -22.81710 -21.89642 -20.57654 -19.55422 -19.28633 -18.72045 -18.08455 -17.35482 -16.83962 -16.46079 -16.39443 -15.89142 -15.63370 -15.40919 -15.02657 -14.98670 -14.83508 -14.61460 -14.44892 -14.13140 -13.84057 -13.56623 -13.39556 -13.22507 -12.89247 -12.83069 -12.68220 -12.40660 -12.33893 -12.18371 -12.01660 -11.98105 -11.83458 -11.62415 -11.55551 -11.45470 -11.21447 -10.72369 -10.56107 -10.35481 -9.93272 -9.67851 -8.88848 -7.82723 -5.18419 -0.69052 0.12906 0.58789 1.40440 1.48568 1.49732 1.58826 1.73899 1.96309 2.50658 3.12454 3.31348 3.34779 3.60536 3.69925 3.76833 3.94658 3.97431 4.04854 4.08354 4.14338 4.32339 4.39814 4.42680 4.51642 4.55918 4.58781 4.62147 4.74690 4.80314 4.93384 4.98759 5.00543 5.02094 5.09811 5.17351 5.29417 5.34841 5.44403 5.52632 5.55323 5.63264 5.77345 6.10923 6.22845 6.57737 6.90117 7.12087 7.77848 8.41076 9.27142 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.004233 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.137853 B = 6613.761410 C = 7663.641954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 C 0.131 3.869 4 N -0.493 5.493 5 C 0.024 3.976 6 S 0.205 5.795 7 C -0.321 4.321 8 C 0.594 3.406 9 O -0.542 6.542 10 N -0.577 5.577 11 C 0.115 3.885 12 C -0.119 4.119 13 C -0.123 4.123 14 C 0.159 3.841 15 H 0.051 0.949 16 C 0.134 3.866 17 H 0.086 0.914 18 C -0.140 4.140 19 C 0.193 3.807 20 N -0.611 5.611 21 C -0.233 4.233 22 H 0.082 0.918 23 C -0.057 4.057 24 N -0.947 5.947 25 Si 0.972 3.028 26 H -0.268 1.268 27 H -0.293 1.293 28 H -0.295 1.295 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.008 0.992 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 -8.239 -5.032 15.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.090 4.090 3 C -0.008 4.008 4 N -0.207 5.207 5 C -0.270 4.270 6 S 0.463 5.537 7 C -0.444 4.444 8 C 0.381 3.619 9 O -0.422 6.422 10 N -0.308 5.308 11 C -0.006 4.006 12 C -0.157 4.157 13 C -0.163 4.163 14 C 0.051 3.949 15 H 0.069 0.931 16 C 0.027 3.973 17 H 0.104 0.896 18 C -0.180 4.180 19 C 0.067 3.933 20 N -0.336 5.336 21 C -0.362 4.362 22 H 0.100 0.900 23 C -0.251 4.251 24 N -0.595 5.595 25 Si 0.801 3.199 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.222 1.222 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.255 0.745 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.045 0.955 44 H 0.026 0.974 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.170 -7.627 -4.889 15.172 hybrid contribution 1.089 0.053 0.128 1.097 sum -11.082 -7.574 -4.761 14.242 Atomic orbital electron populations 1.21615 0.92914 1.02966 1.01671 1.20227 0.97512 0.87783 1.03444 1.20842 0.95908 0.98935 0.85100 1.66175 1.16339 1.07198 1.31014 1.29548 0.98731 0.95948 1.02745 1.84783 1.56283 1.10782 1.01888 1.25483 1.18832 1.01276 0.98853 1.16988 0.83079 0.78837 0.83032 1.90764 1.27725 1.43362 1.80335 1.46972 1.20121 1.50276 1.13408 1.21390 0.98705 0.98650 0.81839 1.21680 0.93466 0.97661 1.02901 1.21947 0.98988 0.97910 0.97437 1.20902 0.89397 0.89701 0.94864 0.93061 1.21241 0.86052 0.90372 0.99616 0.89585 1.23082 0.98400 0.95086 1.01445 1.20742 0.85330 0.88859 0.98348 1.44514 1.02124 1.01205 1.85709 1.19354 0.81617 0.93047 1.42175 0.90014 1.25502 1.01830 0.95195 1.02558 1.70148 1.34642 0.96978 1.57777 0.85111 0.80548 0.77676 0.76592 1.19205 1.22053 1.22247 0.90253 0.93200 0.92682 0.88947 0.90799 0.74550 0.91476 0.88319 0.91250 0.87997 0.92645 0.93208 0.90224 0.91043 0.95478 0.97379 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.86 71.98 0.71 -2.21 16 2 C -0.05 -1.19 5.76 29.85 0.17 -1.02 16 3 C 0.13 3.59 6.04 42.09 0.25 3.84 16 4 N -0.49 -12.91 10.50 -190.40 -2.00 -14.90 16 5 C 0.02 0.53 12.22 130.60 1.60 2.12 16 6 S 0.21 5.18 17.53 -56.49 -0.99 4.19 16 7 C -0.32 -9.27 5.20 23.88 0.12 -9.15 16 8 C 0.59 18.27 6.85 86.45 0.59 18.86 16 9 O -0.54 -18.06 14.49 -4.29 -0.06 -18.13 16 10 N -0.58 -17.13 2.81 -808.30 -2.27 -19.40 16 11 C 0.12 2.95 6.18 86.34 0.53 3.48 16 12 C -0.12 -2.89 6.07 30.39 0.18 -2.71 16 13 C -0.12 -4.03 5.31 30.55 0.16 -3.87 16 14 C 0.16 6.00 3.23 44.97 0.15 6.14 16 15 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 16 C 0.13 4.42 2.29 45.86 0.10 4.52 16 17 H 0.09 2.92 5.02 -6.98 -0.04 2.89 16 18 C -0.14 -4.89 6.00 31.31 0.19 -4.70 16 19 C 0.19 8.84 5.38 86.66 0.47 9.30 16 20 N -0.61 -28.90 2.93 -673.78 -1.97 -30.88 16 21 C -0.23 -12.22 10.28 84.03 0.86 -11.36 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 23 C -0.06 -3.09 5.48 84.86 0.47 -2.63 16 24 N -0.95 -53.87 10.29 21.65 0.22 -53.65 16 25 Si 0.97 43.92 29.55 68.60 2.03 45.95 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 28 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.29 7.04 -2.38 -0.02 1.28 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.07 1.84 7.40 -2.39 -0.02 1.82 16 34 H 0.24 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 2.41 7.03 -2.38 -0.02 2.40 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.10 1.97 8.14 -2.38 -0.02 1.96 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.77 7.98 -2.39 -0.02 1.75 16 41 H 0.08 2.51 5.28 -9.11 -0.05 2.46 16 42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.03 1.38 7.25 -2.39 -0.02 1.37 16 44 H 0.01 0.42 7.60 -2.39 -0.02 0.40 16 45 H 0.25 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -64.25 357.66 2.46 -61.79 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.94 Total: 14.38 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.56 Total: 10.64 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -6.02 Total: -118.83 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.06 Total: -18.13 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -0.99 Total: 4.19 kcal Total: -64.25 2.46 -61.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049510460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.582 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds