Wall clock time and date at job start Tue Mar 31 2020 18:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47452 * 2 1 4 4 N 1.29430 * 124.80638 * 90.03483 * 3 2 1 5 5 C 1.30945 * 117.36521 * 179.69919 * 4 3 2 6 6 C 1.35663 * 114.18968 * 0.48353 * 5 4 3 7 7 C 1.46679 * 126.12541 * 179.82442 * 6 5 4 8 8 O 1.21677 * 120.00600 * 334.19244 * 7 6 5 9 9 N 1.34782 * 119.99629 * 154.19712 * 7 6 5 10 10 C 1.47852 * 122.22817 * 353.71714 * 9 7 6 11 11 C 1.52428 * 110.73443 * 233.57295 * 10 9 7 12 12 C 1.53869 * 110.97515 * 310.04250 * 11 10 9 13 13 C 1.51085 * 107.40412 * 57.97867 * 12 11 10 14 14 H 1.08999 * 108.73825 * 51.43092 * 13 12 11 15 15 C 1.45718 * 122.23004 * 173.69530 * 9 7 6 16 16 H 1.09002 * 111.06885 * 240.54026 * 15 9 7 17 17 C 1.53438 * 117.00613 * 9.60673 * 15 9 7 18 18 C 1.55473 * 101.66826 * 152.98213 * 17 15 9 19 19 N 1.45029 * 119.18878 * 176.07080 * 13 12 11 20 20 C 1.36939 * 126.55873 * 331.21319 * 19 13 12 21 21 H 1.07997 * 120.00412 * 359.97438 * 20 19 13 22 22 C 1.38810 * 119.99481 * 179.97438 * 20 19 13 23 23 N 1.31616 * 120.00710 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99672 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47110 * 90.00055 * 24 22 20 26 26 H 1.48505 * 109.46977 * 210.00406 * 24 22 20 27 27 H 1.48500 * 109.46936 * 329.99924 * 24 22 20 28 28 S 1.70951 * 124.80615 * 270.00207 * 3 2 1 29 29 H 1.08996 * 109.47244 * 299.99916 * 1 2 3 30 30 H 1.09000 * 109.46693 * 60.00426 * 1 2 3 31 31 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47379 * 239.99393 * 2 1 3 33 33 H 1.09004 * 109.47152 * 120.00384 * 2 1 3 34 34 H 1.07998 * 122.90152 * 180.31165 * 5 4 3 35 35 H 1.09005 * 109.16063 * 352.87116 * 10 9 7 36 36 H 1.09003 * 109.15972 * 112.10762 * 10 9 7 37 37 H 1.08991 * 108.52434 * 190.20732 * 11 10 9 38 38 H 1.09003 * 110.16146 * 70.93843 * 11 10 9 39 39 H 1.08999 * 109.88384 * 298.48111 * 12 11 10 40 40 H 1.09003 * 109.88385 * 177.47328 * 12 11 10 41 41 H 1.08997 * 110.98601 * 271.07793 * 17 15 9 42 42 H 1.09005 * 110.98219 * 34.88742 * 17 15 9 43 43 H 1.08998 * 109.96078 * 96.78933 * 18 17 15 44 44 H 1.09012 * 109.95591 * 217.98481 * 18 17 15 45 45 H 0.96996 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2793 2.1171 1.0627 5 6 2.7178 3.3392 0.8931 6 6 2.8428 3.7097 -0.4059 7 6 3.3050 5.0139 -0.8925 8 8 3.1746 6.0039 -0.1972 9 7 3.8742 5.1158 -2.1100 10 6 4.1808 3.9304 -2.9388 11 6 5.6440 3.9343 -3.3657 12 6 6.0379 5.2935 -3.9699 13 6 5.7653 6.3490 -2.9238 14 1 6.2423 6.0489 -1.9909 15 6 4.2278 6.4016 -2.6975 16 1 3.6935 6.5650 -3.6334 17 6 4.1371 7.6325 -1.7860 18 6 5.1869 8.5801 -2.4319 19 7 6.1284 7.7262 -3.1973 20 6 7.1456 8.1561 -4.0070 21 1 7.7706 7.4378 -4.5166 22 6 7.3734 9.5153 -4.1728 23 7 6.6115 10.3909 -3.5523 24 14 8.7615 10.1019 -5.2769 25 1 8.2544 10.2706 -6.6623 26 1 9.2764 11.4018 -4.7764 27 1 9.8571 9.0995 -5.2694 28 16 2.3576 2.3407 -1.4037 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.9565 3.9963 1.7163 35 1 3.9944 3.0284 -2.3558 36 1 3.5332 3.9297 -3.8156 37 1 5.7881 3.1562 -4.1153 38 1 6.2858 3.7257 -2.5097 39 1 5.4404 5.4907 -4.8600 40 1 7.0970 5.2918 -4.2275 41 1 3.1403 8.0720 -1.8216 42 1 4.4152 7.3816 -0.7623 43 1 4.6916 9.2820 -3.1028 44 1 5.7245 9.1244 -1.6553 45 1 6.7709 11.3407 -3.6679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049925723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:42 Heat of formation + Delta-G solvation = 49.288534 kcal Electronic energy + Delta-G solvation = -27282.353987 eV Core-core repulsion = 23620.790435 eV Total energy + Delta-G solvation = -3661.563552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57472 -39.77667 -37.71043 -35.55339 -34.34246 -32.70056 -32.27900 -30.22790 -28.80343 -28.30747 -26.42170 -24.66660 -24.48034 -23.15691 -21.86034 -21.59151 -20.36538 -19.65377 -18.78219 -18.19417 -16.72538 -16.45404 -15.81250 -15.58776 -15.25372 -14.86387 -14.64947 -14.63799 -14.34251 -14.12061 -13.93061 -13.49322 -13.40108 -13.07267 -12.63543 -12.49332 -12.34641 -12.14113 -11.95585 -11.82084 -11.62464 -11.57205 -11.24965 -10.87320 -10.81028 -10.63883 -10.52763 -10.12203 -10.05763 -9.91813 -9.87542 -9.62506 -9.46959 -9.14218 -9.04786 -8.59013 -8.33933 -6.83485 -5.70298 -3.04766 0.09658 0.93769 1.35991 2.36152 2.95219 3.19556 3.39932 3.44795 3.47114 3.76683 4.42903 4.48958 4.52646 4.71580 4.76222 4.79654 5.03452 5.09898 5.18593 5.22110 5.30880 5.37494 5.37899 5.50063 5.54462 5.58595 5.71316 5.73241 5.81983 5.91085 5.94232 6.03499 6.19483 6.25177 6.34926 6.51287 6.68197 6.72983 6.86838 7.14275 7.39639 7.53576 7.58941 7.66213 7.83525 8.22050 8.25026 9.18933 9.82736 10.50763 11.41752 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.002877 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.260099 B = 9729.502117 C =10343.080757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.038 3.962 4 N -0.478 5.478 5 C 0.113 3.887 6 C -0.284 4.284 7 C 0.595 3.405 8 O -0.514 6.514 9 N -0.593 5.593 10 C 0.101 3.899 11 C -0.126 4.126 12 C -0.116 4.116 13 C 0.159 3.841 14 H 0.019 0.981 15 C 0.117 3.883 16 H 0.083 0.917 17 C -0.135 4.135 18 C 0.173 3.827 19 N -0.592 5.592 20 C -0.227 4.227 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 S 0.180 5.820 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.186 0.814 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 -22.200 3.002 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.237 4.237 4 N -0.192 5.192 5 C -0.044 4.044 6 C -0.408 4.408 7 C 0.381 3.619 8 O -0.391 6.391 9 N -0.326 5.326 10 C -0.022 4.022 11 C -0.165 4.165 12 C -0.155 4.155 13 C 0.049 3.951 14 H 0.036 0.964 15 C 0.013 3.987 16 H 0.101 0.899 17 C -0.173 4.173 18 C 0.049 3.951 19 N -0.317 5.317 20 C -0.355 4.355 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 S 0.437 5.563 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.203 0.797 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.047 -21.911 2.750 24.692 hybrid contribution 0.965 0.919 0.103 1.336 sum -10.082 -20.992 2.853 23.462 Atomic orbital electron populations 1.21780 0.93276 1.02710 1.02863 1.20273 0.96873 0.87422 1.04470 1.27740 1.01132 1.02244 0.92550 1.66230 1.15234 1.06181 1.31527 1.22136 0.95481 0.91328 0.95443 1.25939 1.16572 1.00503 0.97787 1.16744 0.77983 0.85981 0.81218 1.90842 1.56515 1.36209 1.55536 1.47851 1.59875 1.08354 1.16504 1.22037 0.97703 0.87292 0.95218 1.21828 0.94534 0.98852 1.01280 1.21450 1.02059 0.93072 0.98914 1.20768 0.91301 0.87315 0.95675 0.96383 1.22466 0.97649 0.82208 0.96350 0.89912 1.23051 1.00171 0.94175 0.99900 1.21735 0.88283 0.90911 0.94178 1.44085 1.35073 0.98681 1.53871 1.18979 1.05771 0.90921 1.19813 0.90346 1.24808 0.99371 0.95823 1.00350 1.69940 1.40159 1.00773 1.45789 0.86147 0.81535 0.78117 0.80112 1.21629 1.21690 1.20740 1.84057 1.57369 1.04066 1.10796 0.91840 0.92270 0.91216 0.89444 0.88636 0.79688 0.90555 0.90652 0.90667 0.91472 0.91631 0.91255 0.92096 0.89445 0.92505 0.94149 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.44 16 2 C -0.05 -0.31 6.51 -27.89 -0.18 -0.49 16 3 C 0.04 0.37 6.64 -13.29 -0.09 0.28 16 4 N -0.48 -5.77 10.51 -11.50 -0.12 -5.89 16 5 C 0.11 1.45 11.18 -18.85 -0.21 1.24 16 6 C -0.28 -3.79 5.94 -37.10 -0.22 -4.01 16 7 C 0.59 9.80 7.64 -12.85 -0.10 9.70 16 8 O -0.51 -10.06 13.76 5.21 0.07 -9.99 16 9 N -0.59 -9.38 2.90 -165.69 -0.48 -9.86 16 10 C 0.10 1.22 5.54 -3.59 -0.02 1.20 16 11 C -0.13 -1.57 5.94 -26.57 -0.16 -1.73 16 12 C -0.12 -1.94 5.42 -27.24 -0.15 -2.09 16 13 C 0.16 3.28 2.58 -68.36 -0.18 3.10 16 14 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 15 C 0.12 2.21 3.30 -66.80 -0.22 1.99 16 16 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 17 C -0.13 -2.85 5.16 -25.19 -0.13 -2.98 16 18 C 0.17 4.36 5.47 -1.69 -0.01 4.35 16 19 N -0.59 -15.07 3.35 -163.28 -0.55 -15.61 16 20 C -0.23 -6.20 9.94 -15.06 -0.15 -6.35 16 21 H 0.08 2.05 7.30 -52.49 -0.38 1.67 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -27.15 10.46 55.49 0.58 -26.57 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 S 0.18 1.72 19.27 -107.50 -2.07 -0.35 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.08 0.80 3.93 -25.23 -0.10 0.70 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 40 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.95 6.06 -51.93 -0.31 1.63 16 43 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16 44 H 0.04 1.12 7.81 -51.92 -0.41 0.71 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -32.56 361.74 -10.28 -42.84 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.60 Total: -0.49 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -1.54 Total: 3.49 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.57 Total: -57.93 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.07 Total: -0.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.56 -10.28 -42.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049925723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.133 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds