Wall clock time and date at job start Tue Mar 31 2020 18:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47452 * 2 1 4 4 N 1.29430 * 124.80638 * 90.03483 * 3 2 1 5 5 C 1.30945 * 117.36521 * 179.69919 * 4 3 2 6 6 C 1.35663 * 114.18968 * 0.48353 * 5 4 3 7 7 C 1.46679 * 126.12541 * 179.82442 * 6 5 4 8 8 O 1.21677 * 120.00600 * 334.19244 * 7 6 5 9 9 N 1.34782 * 119.99629 * 154.19712 * 7 6 5 10 10 C 1.47852 * 122.22817 * 353.71714 * 9 7 6 11 11 C 1.52428 * 110.73443 * 233.57295 * 10 9 7 12 12 C 1.53869 * 110.97515 * 310.04250 * 11 10 9 13 13 C 1.51085 * 107.40412 * 57.97867 * 12 11 10 14 14 H 1.08999 * 108.73825 * 51.43092 * 13 12 11 15 15 C 1.45718 * 122.23004 * 173.69530 * 9 7 6 16 16 H 1.09002 * 111.06885 * 240.54026 * 15 9 7 17 17 C 1.53438 * 117.00613 * 9.60673 * 15 9 7 18 18 C 1.55473 * 101.66826 * 152.98213 * 17 15 9 19 19 N 1.45029 * 119.18878 * 176.07080 * 13 12 11 20 20 C 1.36939 * 126.55873 * 331.21319 * 19 13 12 21 21 H 1.07997 * 120.00412 * 359.97438 * 20 19 13 22 22 C 1.38810 * 119.99481 * 179.97438 * 20 19 13 23 23 N 1.31616 * 120.00710 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99672 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47110 * 90.00055 * 24 22 20 26 26 H 1.48505 * 109.46977 * 210.00406 * 24 22 20 27 27 H 1.48500 * 109.46936 * 329.99924 * 24 22 20 28 28 S 1.70951 * 124.80615 * 270.00207 * 3 2 1 29 29 H 1.08996 * 109.47244 * 299.99916 * 1 2 3 30 30 H 1.09000 * 109.46693 * 60.00426 * 1 2 3 31 31 H 1.09002 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47379 * 239.99393 * 2 1 3 33 33 H 1.09004 * 109.47152 * 120.00384 * 2 1 3 34 34 H 1.07998 * 122.90152 * 180.31165 * 5 4 3 35 35 H 1.09005 * 109.16063 * 352.87116 * 10 9 7 36 36 H 1.09003 * 109.15972 * 112.10762 * 10 9 7 37 37 H 1.08991 * 108.52434 * 190.20732 * 11 10 9 38 38 H 1.09003 * 110.16146 * 70.93843 * 11 10 9 39 39 H 1.08999 * 109.88384 * 298.48111 * 12 11 10 40 40 H 1.09003 * 109.88385 * 177.47328 * 12 11 10 41 41 H 1.08997 * 110.98601 * 271.07793 * 17 15 9 42 42 H 1.09005 * 110.98219 * 34.88742 * 17 15 9 43 43 H 1.08998 * 109.96078 * 96.78933 * 18 17 15 44 44 H 1.09012 * 109.95591 * 217.98481 * 18 17 15 45 45 H 0.96996 * 120.00207 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2793 2.1171 1.0627 5 6 2.7178 3.3392 0.8931 6 6 2.8428 3.7097 -0.4059 7 6 3.3050 5.0139 -0.8925 8 8 3.1746 6.0039 -0.1972 9 7 3.8742 5.1158 -2.1100 10 6 4.1808 3.9304 -2.9388 11 6 5.6440 3.9343 -3.3657 12 6 6.0379 5.2935 -3.9699 13 6 5.7653 6.3490 -2.9238 14 1 6.2423 6.0489 -1.9909 15 6 4.2278 6.4016 -2.6975 16 1 3.6935 6.5650 -3.6334 17 6 4.1371 7.6325 -1.7860 18 6 5.1869 8.5801 -2.4319 19 7 6.1284 7.7262 -3.1973 20 6 7.1456 8.1561 -4.0070 21 1 7.7706 7.4378 -4.5166 22 6 7.3734 9.5153 -4.1728 23 7 6.6115 10.3909 -3.5523 24 14 8.7615 10.1019 -5.2769 25 1 8.2544 10.2706 -6.6623 26 1 9.2764 11.4018 -4.7764 27 1 9.8571 9.0995 -5.2694 28 16 2.3576 2.3407 -1.4037 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.9565 3.9963 1.7163 35 1 3.9944 3.0284 -2.3558 36 1 3.5332 3.9297 -3.8156 37 1 5.7881 3.1562 -4.1153 38 1 6.2858 3.7257 -2.5097 39 1 5.4404 5.4907 -4.8600 40 1 7.0970 5.2918 -4.2275 41 1 3.1403 8.0720 -1.8216 42 1 4.4152 7.3816 -0.7623 43 1 4.6916 9.2820 -3.1028 44 1 5.7245 9.1244 -1.6553 45 1 6.7709 11.3407 -3.6679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049925723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:41 Heat of formation + Delta-G solvation = 28.543552 kcal Electronic energy + Delta-G solvation = -27283.253557 eV Core-core repulsion = 23620.790435 eV Total energy + Delta-G solvation = -3662.463122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87061 -40.78717 -39.17178 -37.07361 -34.97563 -34.29169 -33.94693 -31.51870 -30.37692 -29.77402 -27.32578 -26.41454 -25.87717 -23.93878 -23.05980 -22.96139 -21.92268 -21.26168 -19.72244 -19.31370 -18.46653 -17.62692 -17.13146 -16.93630 -16.59644 -16.29712 -15.94942 -15.69247 -15.45147 -15.33710 -15.01427 -14.83132 -14.57773 -14.34980 -14.17410 -13.89211 -13.48437 -13.27066 -13.18575 -13.00721 -12.73985 -12.71944 -12.55715 -12.37023 -12.20193 -12.04735 -12.00129 -11.85822 -11.75778 -11.64380 -11.48687 -10.86795 -10.74215 -10.54606 -10.33153 -9.89730 -9.67100 -8.92520 -7.84471 -5.21667 -0.80237 0.08714 0.50056 1.37379 1.45986 1.48515 1.56788 1.73550 2.04056 2.50059 3.01784 3.24978 3.34214 3.49719 3.84155 3.87655 3.90124 4.00235 4.01443 4.17966 4.19716 4.25967 4.29799 4.33027 4.51023 4.52861 4.56254 4.64904 4.69766 4.86771 4.96013 4.99687 5.02496 5.05461 5.09957 5.11087 5.25599 5.36014 5.36186 5.47651 5.55308 5.57823 5.70653 6.16753 6.27174 6.58231 6.95639 7.04618 7.74605 8.44552 9.27480 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.002877 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.260099 B = 9729.502117 C =10343.080757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C 0.045 3.955 4 N -0.503 5.503 5 C 0.114 3.886 6 C -0.321 4.321 7 C 0.592 3.408 8 O -0.559 6.559 9 N -0.594 5.594 10 C 0.095 3.905 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.153 3.847 14 H -0.004 1.004 15 C 0.133 3.867 16 H 0.091 0.909 17 C -0.119 4.119 18 C 0.184 3.816 19 N -0.611 5.611 20 C -0.232 4.232 21 H 0.091 0.909 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.980 3.020 25 H -0.283 1.283 26 H -0.299 1.299 27 H -0.267 1.267 28 S 0.249 5.751 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.029 0.971 44 H -0.001 1.001 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 -26.619 1.040 29.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.228 4.228 4 N -0.218 5.218 5 C -0.044 4.044 6 C -0.445 4.445 7 C 0.380 3.620 8 O -0.440 6.440 9 N -0.326 5.326 10 C -0.027 4.027 11 C -0.156 4.156 12 C -0.150 4.150 13 C 0.045 3.955 14 H 0.013 0.987 15 C 0.028 3.972 16 H 0.108 0.892 17 C -0.158 4.158 18 C 0.059 3.941 19 N -0.336 5.336 20 C -0.361 4.361 21 H 0.109 0.891 22 C -0.263 4.263 23 N -0.605 5.605 24 Si 0.808 3.192 25 H -0.209 1.209 26 H -0.226 1.226 27 H -0.191 1.191 28 S 0.507 5.493 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.119 0.881 34 H 0.195 0.805 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.017 0.983 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.645 -26.419 0.755 28.881 hybrid contribution 1.104 2.164 0.787 2.553 sum -10.541 -24.255 1.542 26.491 Atomic orbital electron populations 1.21794 0.92589 1.03993 1.02154 1.20552 0.97284 0.85247 1.06233 1.28481 0.98725 1.03349 0.92263 1.66309 1.16751 1.05986 1.32749 1.22154 0.94968 0.91815 0.95432 1.25604 1.18983 1.00886 0.99015 1.17136 0.77287 0.86788 0.80793 1.90808 1.58221 1.38217 1.56711 1.47893 1.59657 1.08214 1.16859 1.22391 0.98042 0.86285 0.95944 1.21817 0.94481 0.97193 1.02072 1.21424 1.01792 0.93837 0.97920 1.20944 0.92319 0.86063 0.96212 0.98694 1.22072 0.96370 0.82861 0.95856 0.89167 1.22784 0.98837 0.94875 0.99295 1.21422 0.88745 0.91379 0.92552 1.44338 1.34900 1.00917 1.53428 1.19418 1.06108 0.91309 1.19220 0.89149 1.25709 1.02138 0.96151 1.02273 1.70174 1.42081 1.00545 1.47653 0.85055 0.78832 0.77184 0.78124 1.20929 1.22622 1.19147 1.83616 1.55921 1.00927 1.08806 0.93539 0.92019 0.89004 0.86447 0.88124 0.80498 0.88538 0.87844 0.86243 0.92022 0.91002 0.92131 0.91542 0.90760 0.95316 0.98285 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 71.98 0.71 -0.39 16 2 C -0.05 -0.44 6.51 29.85 0.19 -0.25 16 3 C 0.05 0.74 6.64 88.46 0.59 1.32 16 4 N -0.50 -11.39 10.51 -190.31 -2.00 -13.39 16 5 C 0.11 2.91 11.18 84.23 0.94 3.86 16 6 C -0.32 -8.17 5.94 23.88 0.14 -8.03 16 7 C 0.59 19.45 7.64 86.45 0.66 20.11 16 8 O -0.56 -22.83 13.76 -4.28 -0.06 -22.88 16 9 N -0.59 -18.08 2.90 -796.35 -2.31 -20.40 16 10 C 0.10 1.94 5.54 85.93 0.48 2.42 16 11 C -0.12 -2.48 5.94 30.70 0.18 -2.30 16 12 C -0.11 -3.49 5.42 30.26 0.16 -3.33 16 13 C 0.15 6.37 2.58 45.50 0.12 6.49 16 14 H 0.00 -0.20 8.06 -2.39 -0.02 -0.22 16 15 C 0.13 5.03 3.30 46.14 0.15 5.18 16 16 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 17 C -0.12 -5.32 5.16 31.59 0.16 -5.16 16 18 C 0.18 9.90 5.47 86.87 0.48 10.37 16 19 N -0.61 -32.19 3.35 -670.50 -2.25 -34.43 16 20 C -0.23 -12.93 9.94 84.03 0.84 -12.10 16 21 H 0.09 4.70 7.30 -2.91 -0.02 4.68 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 23 N -0.96 -59.18 10.46 21.65 0.23 -58.95 16 24 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 S 0.25 3.84 19.27 -56.49 -1.09 2.75 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.33 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.18 4.57 8.06 -2.91 -0.02 4.54 16 35 H 0.10 1.59 3.93 -19.36 -0.08 1.51 16 36 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 40 H 0.06 2.00 7.70 -2.39 -0.02 1.98 16 41 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.07 3.53 6.06 -2.38 -0.01 3.52 16 43 H 0.03 1.68 7.19 -2.39 -0.02 1.66 16 44 H 0.00 -0.07 7.81 -2.38 -0.02 -0.09 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -76.39 361.74 1.74 -74.65 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.93 Total: 9.99 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 6.27 Total: 14.61 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -6.33 Total: -127.17 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.09 Total: 2.75 kcal Total: -76.39 1.74 -74.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049925723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.190 kcal (2) G-P(sol) polarization free energy of solvation -76.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds