Wall clock time and date at job start Tue Mar 31 2020 18:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46869 * 2 1 4 4 N 1.29427 * 124.80223 * 90.03712 * 3 2 1 5 5 C 1.30944 * 117.36175 * 179.69278 * 4 3 2 6 6 C 1.35666 * 114.19135 * 0.48798 * 5 4 3 7 7 C 1.46677 * 126.13133 * 179.82515 * 6 5 4 8 8 O 1.21690 * 119.99982 * 41.36724 * 7 6 5 9 9 N 1.34777 * 119.99843 * 221.36575 * 7 6 5 10 10 C 1.47850 * 122.22765 * 355.78752 * 9 7 6 11 11 C 1.52714 * 111.06005 * 127.53329 * 10 9 7 12 12 C 1.53867 * 111.52392 * 48.53037 * 11 10 9 13 13 C 1.51077 * 107.35039 * 303.07534 * 12 11 10 14 14 H 1.09007 * 108.73303 * 308.52709 * 13 12 11 15 15 C 1.45724 * 122.22437 * 175.80344 * 9 7 6 16 16 H 1.09000 * 111.06883 * 119.45783 * 15 9 7 17 17 C 1.53430 * 116.37954 * 350.08756 * 15 9 7 18 18 C 1.55471 * 101.67254 * 207.26521 * 17 15 9 19 19 N 1.45019 * 119.20127 * 183.88879 * 13 12 11 20 20 C 1.36946 * 126.55906 * 28.77203 * 19 13 12 21 21 H 1.08000 * 120.00045 * 0.02562 * 20 19 13 22 22 C 1.38809 * 119.99673 * 180.02562 * 20 19 13 23 23 N 1.31620 * 120.00280 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99791 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47067 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46643 * 119.99893 * 24 22 20 27 27 H 1.48498 * 109.46810 * 239.99808 * 24 22 20 28 28 S 1.70950 * 124.80442 * 269.99337 * 3 2 1 29 29 H 1.09010 * 109.46795 * 60.00516 * 1 2 3 30 30 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47680 * 300.00604 * 1 2 3 32 32 H 1.08996 * 109.47815 * 239.99934 * 2 1 3 33 33 H 1.09000 * 109.47301 * 119.99586 * 2 1 3 34 34 H 1.08005 * 122.90540 * 180.30499 * 5 4 3 35 35 H 1.09007 * 109.15512 * 247.93462 * 10 9 7 36 36 H 1.08998 * 109.16066 * 7.16968 * 10 9 7 37 37 H 1.08994 * 109.07246 * 169.06232 * 11 10 9 38 38 H 1.09003 * 109.06554 * 288.00788 * 11 10 9 39 39 H 1.09000 * 109.88054 * 62.53777 * 12 11 10 40 40 H 1.09001 * 109.88306 * 183.61162 * 12 11 10 41 41 H 1.08998 * 110.98255 * 325.36498 * 17 15 9 42 42 H 1.08999 * 110.98655 * 89.16663 * 17 15 9 43 43 H 1.08993 * 109.96004 * 263.21927 * 18 17 15 44 44 H 1.09002 * 109.98653 * 141.99473 * 18 17 15 45 45 H 0.96998 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2791 2.1171 1.0628 5 6 2.7177 3.3393 0.8932 6 6 2.8426 3.7099 -0.4059 7 6 3.3048 5.0141 -0.8926 8 8 4.2443 5.5672 -0.3520 9 7 2.6889 5.5998 -1.9386 10 6 1.6037 4.9328 -2.6890 11 6 0.3712 5.8294 -2.7847 12 6 0.7415 7.2513 -3.2411 13 6 1.7584 7.7884 -2.2614 14 1 1.3709 7.6627 -1.2504 15 6 3.0487 6.9326 -2.4052 16 1 3.3948 6.9058 -3.4385 17 6 3.9994 7.7356 -1.5078 18 6 3.6043 9.1975 -1.8596 19 7 2.2242 9.1545 -2.4027 20 6 1.5242 10.2040 -2.9357 21 1 0.5195 10.0525 -3.3019 22 6 2.1060 11.4623 -3.0051 23 7 3.3302 11.6470 -2.5583 24 14 1.1509 12.8941 -3.7314 25 1 -0.1932 12.4276 -4.1567 26 1 1.0035 13.9604 -2.7085 27 1 1.8831 13.4325 -4.9058 28 16 2.3576 2.3408 -1.4037 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9563 3.9965 1.7164 35 1 1.9550 4.6992 -3.6942 36 1 1.3335 4.0073 -2.1806 37 1 -0.3292 5.3970 -3.4993 38 1 -0.1072 5.8825 -1.8067 39 1 1.1721 7.2191 -4.2420 40 1 -0.1458 7.8844 -3.2387 41 1 3.8143 7.5237 -0.4548 42 1 5.0398 7.5392 -1.7669 43 1 4.2870 9.5973 -2.6093 44 1 3.6322 9.8170 -0.9631 45 1 3.7368 12.5263 -2.6073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049925724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:45 Heat of formation + Delta-G solvation = 47.374229 kcal Electronic energy + Delta-G solvation = -27345.905266 eV Core-core repulsion = 23684.258704 eV Total energy + Delta-G solvation = -3661.646562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.58628 -39.76002 -37.72472 -35.52010 -34.34589 -32.69802 -32.27509 -30.24191 -28.80475 -28.29021 -26.41995 -24.66849 -24.48616 -23.18178 -21.80757 -21.58993 -20.38111 -19.64202 -18.77713 -18.22123 -16.77632 -16.43827 -15.95809 -15.38153 -15.30143 -14.85722 -14.68109 -14.58332 -14.36041 -14.08536 -13.94756 -13.57356 -13.39817 -12.92084 -12.69009 -12.50447 -12.35939 -12.13093 -11.91117 -11.80893 -11.63235 -11.58560 -11.24065 -10.88079 -10.80026 -10.61474 -10.52783 -10.10619 -10.07169 -9.96497 -9.88230 -9.63947 -9.52245 -9.19077 -9.05290 -8.61178 -8.33270 -6.84419 -5.71131 -3.05643 0.13588 0.90247 1.33122 2.39303 2.89476 3.17463 3.39515 3.44545 3.47367 3.76220 4.43577 4.48519 4.52486 4.73910 4.77807 4.79111 5.00449 5.12252 5.19725 5.23215 5.31290 5.38216 5.38554 5.50695 5.54659 5.59258 5.71745 5.73904 5.80872 5.89983 5.93986 6.03246 6.19482 6.24916 6.34184 6.50501 6.67298 6.72351 6.84746 7.11065 7.39147 7.52241 7.58526 7.65051 7.82780 8.20354 8.24306 9.18143 9.81935 10.49706 11.40968 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002977 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.851531 B = 9401.754695 C =10042.787244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.042 3.958 4 N -0.474 5.474 5 C 0.106 3.894 6 C -0.278 4.278 7 C 0.594 3.406 8 O -0.513 6.513 9 N -0.590 5.590 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.116 4.116 13 C 0.159 3.841 14 H 0.018 0.982 15 C 0.117 3.883 16 H 0.084 0.916 17 C -0.129 4.129 18 C 0.172 3.828 19 N -0.592 5.592 20 C -0.226 4.226 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 S 0.174 5.826 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.185 0.815 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.040 0.960 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 -24.244 0.786 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.233 4.233 4 N -0.188 5.188 5 C -0.050 4.050 6 C -0.402 4.402 7 C 0.379 3.621 8 O -0.390 6.390 9 N -0.323 5.323 10 C -0.023 4.023 11 C -0.166 4.166 12 C -0.154 4.154 13 C 0.049 3.951 14 H 0.035 0.965 15 C 0.013 3.987 16 H 0.102 0.898 17 C -0.167 4.167 18 C 0.048 3.952 19 N -0.317 5.317 20 C -0.355 4.355 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 S 0.431 5.569 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.202 0.798 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.722 -24.169 0.476 24.630 hybrid contribution -0.287 1.400 0.343 1.470 sum -5.009 -22.768 0.819 23.327 Atomic orbital electron populations 1.21787 0.93206 1.02733 1.02917 1.20277 0.96929 0.87318 1.04468 1.27604 1.01791 1.02018 0.91896 1.66191 1.15244 1.06028 1.31364 1.22081 0.96142 0.91459 0.95270 1.25886 1.15688 1.00759 0.97843 1.16731 0.82590 0.82678 0.80134 1.90870 1.27212 1.63505 1.57408 1.47903 1.35517 1.18197 1.30638 1.22053 0.88019 0.95686 0.96588 1.21875 0.96294 0.96235 1.02179 1.21436 1.00322 0.93967 0.99699 1.20768 0.91815 0.86280 0.96205 0.96460 1.22501 0.99047 0.79125 0.97984 0.89812 1.22946 0.97701 0.96390 0.99691 1.21749 0.85591 0.89694 0.98170 1.44101 1.13518 1.02503 1.71592 1.19030 0.96727 0.86644 1.33055 0.90277 1.24812 0.96642 0.97569 1.01337 1.69954 1.13363 1.21922 1.51387 0.86072 0.78798 0.82666 0.78379 1.20532 1.21778 1.21768 1.83970 1.58225 1.03420 1.11269 0.92224 0.91227 0.91780 0.89477 0.88592 0.79816 0.90907 0.90448 0.90640 0.91755 0.91612 0.91237 0.90328 0.91784 0.92419 0.94145 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.43 16 2 C -0.05 -0.30 6.51 -27.88 -0.18 -0.49 16 3 C 0.04 0.41 6.64 -13.29 -0.09 0.32 16 4 N -0.47 -5.75 10.51 -11.50 -0.12 -5.87 16 5 C 0.11 1.38 11.29 -18.85 -0.21 1.17 16 6 C -0.28 -3.73 5.67 -37.10 -0.21 -3.94 16 7 C 0.59 9.80 7.53 -12.85 -0.10 9.71 16 8 O -0.51 -10.09 14.03 5.20 0.07 -10.02 16 9 N -0.59 -9.36 2.91 -165.53 -0.48 -9.84 16 10 C 0.10 1.22 5.91 -3.45 -0.02 1.20 16 11 C -0.13 -1.59 5.93 -26.43 -0.16 -1.75 16 12 C -0.12 -1.93 5.45 -27.25 -0.15 -2.08 16 13 C 0.16 3.27 2.57 -68.37 -0.18 3.09 16 14 H 0.02 0.40 8.06 -51.92 -0.42 -0.02 16 15 C 0.12 2.21 3.32 -66.80 -0.22 1.99 16 16 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 17 C -0.13 -2.72 4.95 -25.20 -0.12 -2.85 16 18 C 0.17 4.32 5.47 -1.69 -0.01 4.31 16 19 N -0.59 -15.03 3.35 -163.29 -0.55 -15.58 16 20 C -0.23 -6.19 9.94 -15.06 -0.15 -6.34 16 21 H 0.08 2.07 7.31 -52.49 -0.38 1.69 16 22 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 23 N -0.92 -27.10 10.46 55.49 0.58 -26.52 16 24 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 S 0.17 1.68 19.88 -107.50 -2.14 -0.45 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.18 2.26 8.06 -52.48 -0.42 1.84 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.82 4.02 -29.84 -0.12 0.70 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 40 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 41 H 0.08 1.73 6.34 -51.93 -0.33 1.40 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.57 7.19 -51.93 -0.37 1.20 16 44 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -32.54 362.89 -10.35 -42.89 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.64 Total: -0.66 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -1.52 Total: 3.63 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.57 Total: -57.81 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.14 Total: -0.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.54 -10.35 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049925724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.262 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds