Wall clock time and date at job start Tue Mar 31 2020 18:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50709 * 109.46869 * 2 1 4 4 N 1.29427 * 124.80223 * 90.03712 * 3 2 1 5 5 C 1.30944 * 117.36175 * 179.69278 * 4 3 2 6 6 C 1.35666 * 114.19135 * 0.48798 * 5 4 3 7 7 C 1.46677 * 126.13133 * 179.82515 * 6 5 4 8 8 O 1.21690 * 119.99982 * 41.36724 * 7 6 5 9 9 N 1.34777 * 119.99843 * 221.36575 * 7 6 5 10 10 C 1.47850 * 122.22765 * 355.78752 * 9 7 6 11 11 C 1.52714 * 111.06005 * 127.53329 * 10 9 7 12 12 C 1.53867 * 111.52392 * 48.53037 * 11 10 9 13 13 C 1.51077 * 107.35039 * 303.07534 * 12 11 10 14 14 H 1.09007 * 108.73303 * 308.52709 * 13 12 11 15 15 C 1.45724 * 122.22437 * 175.80344 * 9 7 6 16 16 H 1.09000 * 111.06883 * 119.45783 * 15 9 7 17 17 C 1.53430 * 116.37954 * 350.08756 * 15 9 7 18 18 C 1.55471 * 101.67254 * 207.26521 * 17 15 9 19 19 N 1.45019 * 119.20127 * 183.88879 * 13 12 11 20 20 C 1.36946 * 126.55906 * 28.77203 * 19 13 12 21 21 H 1.08000 * 120.00045 * 0.02562 * 20 19 13 22 22 C 1.38809 * 119.99673 * 180.02562 * 20 19 13 23 23 N 1.31620 * 120.00280 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99791 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47067 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.46643 * 119.99893 * 24 22 20 27 27 H 1.48498 * 109.46810 * 239.99808 * 24 22 20 28 28 S 1.70950 * 124.80442 * 269.99337 * 3 2 1 29 29 H 1.09010 * 109.46795 * 60.00516 * 1 2 3 30 30 H 1.09004 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47680 * 300.00604 * 1 2 3 32 32 H 1.08996 * 109.47815 * 239.99934 * 2 1 3 33 33 H 1.09000 * 109.47301 * 119.99586 * 2 1 3 34 34 H 1.08005 * 122.90540 * 180.30499 * 5 4 3 35 35 H 1.09007 * 109.15512 * 247.93462 * 10 9 7 36 36 H 1.08998 * 109.16066 * 7.16968 * 10 9 7 37 37 H 1.08994 * 109.07246 * 169.06232 * 11 10 9 38 38 H 1.09003 * 109.06554 * 288.00788 * 11 10 9 39 39 H 1.09000 * 109.88054 * 62.53777 * 12 11 10 40 40 H 1.09001 * 109.88306 * 183.61162 * 12 11 10 41 41 H 1.08998 * 110.98255 * 325.36498 * 17 15 9 42 42 H 1.08999 * 110.98655 * 89.16663 * 17 15 9 43 43 H 1.08993 * 109.96004 * 263.21927 * 18 17 15 44 44 H 1.09002 * 109.98653 * 141.99473 * 18 17 15 45 45 H 0.96998 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2791 2.1171 1.0628 5 6 2.7177 3.3393 0.8932 6 6 2.8426 3.7099 -0.4059 7 6 3.3048 5.0141 -0.8926 8 8 4.2443 5.5672 -0.3520 9 7 2.6889 5.5998 -1.9386 10 6 1.6037 4.9328 -2.6890 11 6 0.3712 5.8294 -2.7847 12 6 0.7415 7.2513 -3.2411 13 6 1.7584 7.7884 -2.2614 14 1 1.3709 7.6627 -1.2504 15 6 3.0487 6.9326 -2.4052 16 1 3.3948 6.9058 -3.4385 17 6 3.9994 7.7356 -1.5078 18 6 3.6043 9.1975 -1.8596 19 7 2.2242 9.1545 -2.4027 20 6 1.5242 10.2040 -2.9357 21 1 0.5195 10.0525 -3.3019 22 6 2.1060 11.4623 -3.0051 23 7 3.3302 11.6470 -2.5583 24 14 1.1509 12.8941 -3.7314 25 1 -0.1932 12.4276 -4.1567 26 1 1.0035 13.9604 -2.7085 27 1 1.8831 13.4325 -4.9058 28 16 2.3576 2.3408 -1.4037 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9563 3.9965 1.7164 35 1 1.9550 4.6992 -3.6942 36 1 1.3335 4.0073 -2.1806 37 1 -0.3292 5.3970 -3.4993 38 1 -0.1072 5.8825 -1.8067 39 1 1.1721 7.2191 -4.2420 40 1 -0.1458 7.8844 -3.2387 41 1 3.8143 7.5237 -0.4548 42 1 5.0398 7.5392 -1.7669 43 1 4.2870 9.5973 -2.6093 44 1 3.6322 9.8170 -0.9631 45 1 3.7368 12.5263 -2.6073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049925724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:45 Heat of formation + Delta-G solvation = 26.774769 kcal Electronic energy + Delta-G solvation = -27346.798526 eV Core-core repulsion = 23684.258704 eV Total energy + Delta-G solvation = -3662.539822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.88266 -40.78161 -39.19246 -37.04711 -34.97413 -34.29383 -33.94617 -31.52498 -30.38474 -29.76161 -27.31981 -26.41970 -25.88916 -23.95640 -23.04121 -22.94185 -21.93922 -21.23976 -19.73583 -19.33308 -18.48630 -17.63101 -17.25451 -16.98988 -16.44170 -16.33930 -15.89110 -15.63536 -15.47667 -15.32016 -15.09520 -14.85648 -14.56106 -14.35536 -14.12109 -13.91401 -13.48129 -13.24458 -13.20125 -12.99539 -12.77108 -12.74061 -12.53757 -12.32768 -12.20038 -12.00204 -11.99499 -11.84499 -11.76641 -11.65423 -11.51103 -10.93492 -10.76982 -10.62852 -10.32780 -9.90689 -9.67648 -8.93290 -7.84990 -5.22241 -0.75954 0.03961 0.47049 1.39259 1.46099 1.47502 1.57571 1.68584 2.00685 2.49667 3.01406 3.25359 3.33970 3.48410 3.84078 3.88393 3.88803 3.98392 3.99729 4.16846 4.20261 4.26764 4.30384 4.33903 4.50236 4.51909 4.56652 4.66547 4.69417 4.85538 4.95404 4.99222 5.03578 5.05150 5.09091 5.11906 5.24804 5.34860 5.38213 5.47382 5.53225 5.56536 5.69521 6.16163 6.26191 6.56880 6.93538 7.04209 7.74002 8.43689 9.27116 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002977 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.851531 B = 9401.754695 C =10042.787244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.050 3.950 4 N -0.500 5.500 5 C 0.107 3.893 6 C -0.315 4.315 7 C 0.592 3.408 8 O -0.558 6.558 9 N -0.591 5.591 10 C 0.094 3.906 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.153 3.847 14 H -0.003 1.003 15 C 0.133 3.867 16 H 0.091 0.909 17 C -0.113 4.113 18 C 0.184 3.816 19 N -0.611 5.611 20 C -0.231 4.231 21 H 0.091 0.909 22 C -0.070 4.070 23 N -0.955 5.955 24 Si 0.979 3.021 25 H -0.260 1.260 26 H -0.297 1.297 27 H -0.292 1.292 28 S 0.241 5.759 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.177 0.823 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.029 0.971 44 H 0.000 1.000 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -27.908 -1.160 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.224 4.224 4 N -0.215 5.215 5 C -0.050 4.050 6 C -0.439 4.439 7 C 0.379 3.621 8 O -0.438 6.438 9 N -0.323 5.323 10 C -0.027 4.027 11 C -0.156 4.156 12 C -0.149 4.149 13 C 0.045 3.955 14 H 0.014 0.986 15 C 0.028 3.972 16 H 0.108 0.892 17 C -0.151 4.151 18 C 0.058 3.942 19 N -0.336 5.336 20 C -0.360 4.360 21 H 0.109 0.891 22 C -0.263 4.263 23 N -0.604 5.604 24 Si 0.808 3.192 25 H -0.184 1.184 26 H -0.225 1.225 27 H -0.219 1.219 28 S 0.499 5.501 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.194 0.806 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.018 0.982 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.169 -27.900 -1.500 28.846 hybrid contribution 0.424 2.402 1.013 2.641 sum -6.745 -25.498 -0.487 26.380 Atomic orbital electron populations 1.21798 0.92307 1.04011 1.02370 1.20555 0.97521 0.85107 1.06106 1.28353 0.99344 1.03095 0.91599 1.66269 1.16792 1.05812 1.32587 1.22102 0.95710 0.91945 0.95248 1.25563 1.18301 1.00961 0.99048 1.17117 0.81929 0.83558 0.79509 1.90834 1.29245 1.65079 1.58634 1.47944 1.36442 1.16946 1.30953 1.22396 0.86718 0.95929 0.97683 1.21858 0.97154 0.93568 1.03021 1.21410 0.98429 0.96325 0.98749 1.20940 0.93872 0.84309 0.96381 0.98585 1.22109 0.96947 0.80597 0.97543 0.89153 1.22673 0.98577 0.94343 0.99544 1.21434 0.85765 0.91522 0.95455 1.44351 1.13484 1.04478 1.71273 1.19460 0.97264 0.87319 1.31924 0.89111 1.25707 0.97698 1.00375 1.02470 1.70182 1.15126 1.21974 1.53155 0.84991 0.78260 0.78934 0.77044 1.18415 1.22466 1.21897 1.83580 1.56679 1.00500 1.09301 0.91687 0.89114 0.93418 0.86652 0.88173 0.80608 0.88227 0.88420 0.86325 0.92267 0.91053 0.92081 0.91548 0.91398 0.95261 0.98204 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.05 -0.44 6.51 29.85 0.19 -0.25 16 3 C 0.05 0.82 6.64 88.47 0.59 1.41 16 4 N -0.50 -11.39 10.51 -190.29 -2.00 -13.39 16 5 C 0.11 2.75 11.29 84.23 0.95 3.70 16 6 C -0.31 -8.08 5.67 23.88 0.14 -7.94 16 7 C 0.59 19.47 7.53 86.45 0.65 20.12 16 8 O -0.56 -22.76 14.03 -4.32 -0.06 -22.82 16 9 N -0.59 -18.08 2.91 -795.82 -2.32 -20.40 16 10 C 0.09 1.96 5.91 86.03 0.51 2.47 16 11 C -0.12 -2.52 5.93 30.79 0.18 -2.34 16 12 C -0.11 -3.48 5.45 30.26 0.16 -3.32 16 13 C 0.15 6.36 2.57 45.50 0.12 6.48 16 14 H 0.00 -0.15 8.06 -2.38 -0.02 -0.17 16 15 C 0.13 5.03 3.32 46.14 0.15 5.18 16 16 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 17 C -0.11 -5.02 4.95 31.59 0.16 -4.87 16 18 C 0.18 9.83 5.47 86.87 0.48 10.30 16 19 N -0.61 -32.10 3.35 -670.53 -2.25 -34.34 16 20 C -0.23 -12.85 9.94 84.03 0.84 -12.02 16 21 H 0.09 4.72 7.31 -2.91 -0.02 4.70 16 22 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 23 N -0.96 -59.05 10.46 21.65 0.23 -58.83 16 24 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 25 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 S 0.24 3.81 19.88 -56.49 -1.12 2.68 16 29 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.18 4.56 8.06 -2.91 -0.02 4.53 16 35 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.10 1.65 4.02 -16.43 -0.07 1.58 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 40 H 0.06 2.02 7.70 -2.39 -0.02 2.00 16 41 H 0.07 3.13 6.34 -2.39 -0.02 3.11 16 42 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 43 H 0.03 1.71 7.19 -2.39 -0.02 1.69 16 44 H 0.00 -0.02 7.81 -2.39 -0.02 -0.04 16 45 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.99 362.89 1.73 -74.26 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.94 Total: 9.78 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 6.29 Total: 15.05 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -6.34 Total: -126.96 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.06 Total: -22.82 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.12 Total: 2.68 kcal Total: -75.99 1.73 -74.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049925724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.030 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds