Wall clock time and date at job start Tue Mar 31 2020 18:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47330 * 2 1 4 4 N 1.29427 * 124.80516 * 89.97523 * 3 2 1 5 5 C 1.30943 * 117.36216 * 179.76800 * 4 3 2 6 6 C 1.35657 * 114.19546 * 0.45613 * 5 4 3 7 7 C 1.46681 * 126.13551 * 179.84795 * 6 5 4 8 8 O 1.21688 * 119.99576 * 332.96586 * 7 6 5 9 9 N 1.34776 * 119.99917 * 152.68572 * 7 6 5 10 10 C 1.46805 * 119.57091 * 173.52321 * 9 7 6 11 11 C 1.54488 * 106.66817 * 126.54438 * 10 9 7 12 12 C 1.52740 * 107.46325 * 60.00656 * 11 10 9 13 13 C 1.53012 * 110.80092 * 294.83576 * 12 11 10 14 14 H 1.09007 * 111.38760 * 291.23736 * 13 12 11 15 15 C 1.45110 * 119.57697 * 353.80082 * 9 7 6 16 16 H 1.08993 * 109.97481 * 348.03625 * 15 9 7 17 17 C 1.54427 * 111.60882 * 111.32271 * 15 9 7 18 18 C 1.54567 * 102.44987 * 156.57533 * 17 15 9 19 19 N 1.47126 * 107.25349 * 338.33182 * 18 17 15 20 20 C 1.36938 * 125.76856 * 177.43696 * 19 18 17 21 21 H 1.07997 * 120.00115 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99691 * 359.96116 * 20 19 18 23 23 N 1.31619 * 120.00567 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46959 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47743 * 119.99748 * 24 22 20 27 27 H 1.48508 * 109.47075 * 239.99761 * 24 22 20 28 28 S 1.70953 * 124.80414 * 269.99965 * 3 2 1 29 29 H 1.08994 * 109.47233 * 300.00267 * 1 2 3 30 30 H 1.09009 * 109.47374 * 60.00015 * 1 2 3 31 31 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46963 * 239.99745 * 2 1 3 33 33 H 1.08998 * 109.46968 * 120.00248 * 2 1 3 34 34 H 1.08000 * 122.89996 * 180.30202 * 5 4 3 35 35 H 1.09002 * 109.83221 * 247.49957 * 10 9 7 36 36 H 1.08998 * 109.83264 * 8.45502 * 10 9 7 37 37 H 1.09005 * 111.27851 * 299.96447 * 11 10 9 38 38 H 1.09000 * 109.14207 * 178.83296 * 11 10 9 39 39 H 1.08999 * 109.21185 * 174.49584 * 12 11 10 40 40 H 1.09000 * 109.21214 * 55.17535 * 12 11 10 41 41 H 1.08997 * 110.80972 * 274.81442 * 17 15 9 42 42 H 1.08994 * 110.80911 * 38.33455 * 17 15 9 43 43 H 1.09001 * 109.88677 * 218.92463 * 18 17 15 44 44 H 1.08997 * 109.88744 * 97.73908 * 18 17 15 45 45 H 0.96998 * 120.00450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2782 2.1174 1.0627 5 6 2.7155 3.3400 0.8931 6 6 2.8412 3.7103 -0.4059 7 6 3.3028 5.0147 -0.8927 8 8 3.1510 6.0085 -0.2069 9 7 3.9002 5.1117 -2.0969 10 6 4.2295 6.4361 -2.6377 11 6 5.7316 6.4069 -2.9975 12 6 5.9328 5.3051 -4.0361 13 6 5.6280 3.9308 -3.4363 14 1 6.3733 3.6472 -2.6932 15 6 4.2040 3.9059 -2.8449 16 1 4.0807 3.0309 -2.2068 17 6 3.3282 3.7863 -4.1112 18 6 4.1763 2.8647 -5.0170 19 7 5.5678 2.9517 -4.5474 20 6 6.6284 2.2476 -5.0520 21 1 7.6152 2.3848 -4.6351 22 6 6.4351 1.3573 -6.0993 23 7 5.2324 1.1894 -6.6070 24 14 7.8817 0.3963 -6.7873 25 1 9.1162 0.7632 -6.0480 26 1 7.6269 -1.0587 -6.6350 27 1 8.0521 0.7210 -8.2264 28 16 2.3576 2.3407 -1.4037 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 2.9532 3.9975 1.7163 35 1 3.6133 6.6418 -3.5130 36 1 4.0599 7.1986 -1.8775 37 1 6.3445 6.1998 -2.1202 38 1 6.0157 7.3688 -3.4242 39 1 6.9658 5.3238 -4.3833 40 1 5.2679 5.4831 -4.8812 41 1 2.3697 3.3235 -3.8768 42 1 3.1852 4.7615 -4.5765 43 1 4.1125 3.2012 -6.0518 44 1 3.8214 1.8372 -4.9365 45 1 5.0973 0.5670 -7.3386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049925725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:49 Heat of formation + Delta-G solvation = 41.742393 kcal Electronic energy + Delta-G solvation = -27854.709245 eV Core-core repulsion = 24192.818468 eV Total energy + Delta-G solvation = -3661.890777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56554 -39.64694 -38.02282 -35.05867 -34.17122 -32.94889 -32.16064 -29.98727 -29.07470 -28.26057 -26.23774 -24.72251 -24.43432 -23.02547 -22.23958 -21.40922 -20.13655 -19.64949 -18.60850 -17.95394 -17.03178 -16.70776 -16.03454 -15.34854 -15.08116 -14.79830 -14.65497 -14.51079 -14.18683 -13.96458 -13.72178 -13.57579 -13.35307 -12.96456 -12.66185 -12.47786 -12.22571 -12.02708 -11.90602 -11.70189 -11.36595 -11.34903 -11.10817 -11.05566 -10.89133 -10.73220 -10.55752 -10.29046 -10.13827 -10.04718 -9.89499 -9.72970 -9.57438 -9.16024 -8.78561 -8.72037 -8.39336 -6.97205 -5.80982 -3.15372 0.28314 1.19069 1.62336 2.48726 3.00093 3.21050 3.33969 3.40619 3.42217 3.98625 4.38006 4.57645 4.76571 4.96531 4.99606 5.01843 5.11537 5.18950 5.25733 5.31362 5.40214 5.42976 5.44347 5.52129 5.60215 5.62899 5.72618 5.75813 5.93590 6.00577 6.04210 6.07295 6.11104 6.14756 6.24899 6.34488 6.40497 6.65363 6.75210 6.93365 7.42522 7.44644 7.47036 7.63326 7.71629 8.10838 8.14741 9.10769 9.69925 10.34714 11.30425 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004843 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.892687 B = 5780.486841 C = 7718.018646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.032 3.968 4 N -0.484 5.484 5 C 0.115 3.885 6 C -0.304 4.304 7 C 0.595 3.405 8 O -0.538 6.538 9 N -0.587 5.587 10 C 0.114 3.886 11 C -0.131 4.131 12 C -0.131 4.131 13 C 0.160 3.840 14 H 0.060 0.940 15 C 0.110 3.890 16 H 0.096 0.904 17 C -0.155 4.155 18 C 0.181 3.819 19 N -0.596 5.596 20 C -0.227 4.227 21 H 0.079 0.921 22 C -0.004 4.004 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 S 0.226 5.774 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.183 0.817 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.635 2.762 9.561 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.242 4.242 4 N -0.198 5.198 5 C -0.044 4.044 6 C -0.428 4.428 7 C 0.382 3.618 8 O -0.417 6.417 9 N -0.318 5.318 10 C -0.008 4.008 11 C -0.170 4.170 12 C -0.172 4.172 13 C 0.052 3.948 14 H 0.078 0.922 15 C 0.004 3.996 16 H 0.113 0.887 17 C -0.195 4.195 18 C 0.056 3.944 19 N -0.321 5.321 20 C -0.355 4.355 21 H 0.097 0.903 22 C -0.201 4.201 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 S 0.485 5.515 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.199 0.801 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.838 2.598 9.119 12.302 hybrid contribution 1.012 0.014 0.183 1.028 sum -6.827 2.612 9.302 11.831 Atomic orbital electron populations 1.21771 0.93355 1.02683 1.02684 1.20291 0.96783 0.87516 1.04690 1.27834 1.00658 1.02450 0.93233 1.66241 1.15786 1.06061 1.31753 1.22045 0.95701 0.91479 0.95138 1.25780 1.18027 1.00841 0.98173 1.16855 0.77526 0.86248 0.81188 1.90786 1.57975 1.36886 1.56048 1.47521 1.58379 1.07994 1.17922 1.21982 0.95940 0.83617 0.99221 1.22100 0.95015 0.99633 1.00243 1.22122 1.02274 0.94867 0.97893 1.21281 0.92529 0.90129 0.90897 0.92167 1.22335 0.98269 0.85633 0.93365 0.88679 1.23263 0.98419 1.01492 0.96311 1.21193 0.82278 0.96409 0.94485 1.44697 1.05069 1.46117 1.36217 1.19075 0.87487 1.16345 1.12623 0.90315 1.24769 0.96839 0.99775 0.98701 1.69941 1.19516 1.39283 1.28076 0.86069 0.81439 0.79682 0.78707 1.20501 1.21712 1.21739 1.84788 1.55273 1.02785 1.08690 0.92013 0.92242 0.91231 0.89126 0.88723 0.80057 0.90861 0.89097 0.91488 0.91285 0.91949 0.91760 0.91871 0.91528 0.93774 0.92730 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 37.16 0.37 -0.84 16 2 C -0.05 -0.51 6.51 -27.89 -0.18 -0.69 16 3 C 0.03 0.41 6.64 -13.29 -0.09 0.32 16 4 N -0.48 -6.90 10.51 -11.50 -0.12 -7.02 16 5 C 0.11 1.65 11.19 -18.85 -0.21 1.44 16 6 C -0.30 -4.62 5.78 -37.10 -0.21 -4.84 16 7 C 0.60 9.81 7.57 -12.85 -0.10 9.72 16 8 O -0.54 -9.85 16.31 5.20 0.08 -9.77 16 9 N -0.59 -9.22 2.70 -165.92 -0.45 -9.67 16 10 C 0.11 1.59 6.21 -3.09 -0.02 1.57 16 11 C -0.13 -1.80 6.17 -26.08 -0.16 -1.96 16 12 C -0.13 -2.22 5.12 -26.86 -0.14 -2.36 16 13 C 0.16 3.06 3.54 -66.35 -0.23 2.82 16 14 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 15 C 0.11 1.86 2.28 -67.29 -0.15 1.71 16 16 H 0.10 1.65 4.05 -25.59 -0.10 1.54 16 17 C -0.16 -2.67 5.84 -25.16 -0.15 -2.82 16 18 C 0.18 3.99 5.24 -2.88 -0.02 3.98 16 19 N -0.60 -13.81 2.95 -162.18 -0.48 -14.29 16 20 C -0.23 -5.89 10.29 -15.06 -0.16 -6.04 16 21 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 22 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 23 N -0.92 -25.37 10.33 55.49 0.57 -24.80 16 24 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 28 S 0.23 3.10 17.93 -107.50 -1.93 1.17 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.18 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.07 0.96 7.51 -51.93 -0.39 0.57 16 36 H 0.09 1.26 6.93 -51.93 -0.36 0.90 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.14 7.20 -51.93 -0.37 0.77 16 41 H 0.06 0.99 6.94 -51.93 -0.36 0.63 16 42 H 0.07 1.10 6.81 -51.93 -0.35 0.74 16 43 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 44 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -29.72 361.17 -9.93 -39.65 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.49 Total: 1.37 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.54 Total: 1.80 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.47 Total: -55.78 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.93 Total: 1.17 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.72 -9.93 -39.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049925725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.392 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds