Wall clock time and date at job start Tue Mar 31 2020 18:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47330 * 2 1 4 4 N 1.29427 * 124.80516 * 89.97523 * 3 2 1 5 5 C 1.30943 * 117.36216 * 179.76800 * 4 3 2 6 6 C 1.35657 * 114.19546 * 0.45613 * 5 4 3 7 7 C 1.46681 * 126.13551 * 179.84795 * 6 5 4 8 8 O 1.21688 * 119.99576 * 332.96586 * 7 6 5 9 9 N 1.34776 * 119.99917 * 152.68572 * 7 6 5 10 10 C 1.46805 * 119.57091 * 173.52321 * 9 7 6 11 11 C 1.54488 * 106.66817 * 126.54438 * 10 9 7 12 12 C 1.52740 * 107.46325 * 60.00656 * 11 10 9 13 13 C 1.53012 * 110.80092 * 294.83576 * 12 11 10 14 14 H 1.09007 * 111.38760 * 291.23736 * 13 12 11 15 15 C 1.45110 * 119.57697 * 353.80082 * 9 7 6 16 16 H 1.08993 * 109.97481 * 348.03625 * 15 9 7 17 17 C 1.54427 * 111.60882 * 111.32271 * 15 9 7 18 18 C 1.54567 * 102.44987 * 156.57533 * 17 15 9 19 19 N 1.47126 * 107.25349 * 338.33182 * 18 17 15 20 20 C 1.36938 * 125.76856 * 177.43696 * 19 18 17 21 21 H 1.07997 * 120.00115 * 179.97438 * 20 19 18 22 22 C 1.38810 * 119.99691 * 359.96116 * 20 19 18 23 23 N 1.31619 * 120.00567 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99994 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46959 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47743 * 119.99748 * 24 22 20 27 27 H 1.48508 * 109.47075 * 239.99761 * 24 22 20 28 28 S 1.70953 * 124.80414 * 269.99965 * 3 2 1 29 29 H 1.08994 * 109.47233 * 300.00267 * 1 2 3 30 30 H 1.09009 * 109.47374 * 60.00015 * 1 2 3 31 31 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46963 * 239.99745 * 2 1 3 33 33 H 1.08998 * 109.46968 * 120.00248 * 2 1 3 34 34 H 1.08000 * 122.89996 * 180.30202 * 5 4 3 35 35 H 1.09002 * 109.83221 * 247.49957 * 10 9 7 36 36 H 1.08998 * 109.83264 * 8.45502 * 10 9 7 37 37 H 1.09005 * 111.27851 * 299.96447 * 11 10 9 38 38 H 1.09000 * 109.14207 * 178.83296 * 11 10 9 39 39 H 1.08999 * 109.21185 * 174.49584 * 12 11 10 40 40 H 1.09000 * 109.21214 * 55.17535 * 12 11 10 41 41 H 1.08997 * 110.80972 * 274.81442 * 17 15 9 42 42 H 1.08994 * 110.80911 * 38.33455 * 17 15 9 43 43 H 1.09001 * 109.88677 * 218.92463 * 18 17 15 44 44 H 1.08997 * 109.88744 * 97.73908 * 18 17 15 45 45 H 0.96998 * 120.00450 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2782 2.1174 1.0627 5 6 2.7155 3.3400 0.8931 6 6 2.8412 3.7103 -0.4059 7 6 3.3028 5.0147 -0.8927 8 8 3.1510 6.0085 -0.2069 9 7 3.9002 5.1117 -2.0969 10 6 4.2295 6.4361 -2.6377 11 6 5.7316 6.4069 -2.9975 12 6 5.9328 5.3051 -4.0361 13 6 5.6280 3.9308 -3.4363 14 1 6.3733 3.6472 -2.6932 15 6 4.2040 3.9059 -2.8449 16 1 4.0807 3.0309 -2.2068 17 6 3.3282 3.7863 -4.1112 18 6 4.1763 2.8647 -5.0170 19 7 5.5678 2.9517 -4.5474 20 6 6.6284 2.2476 -5.0520 21 1 7.6152 2.3848 -4.6351 22 6 6.4351 1.3573 -6.0993 23 7 5.2324 1.1894 -6.6070 24 14 7.8817 0.3963 -6.7873 25 1 9.1162 0.7632 -6.0480 26 1 7.6269 -1.0587 -6.6350 27 1 8.0521 0.7210 -8.2264 28 16 2.3576 2.3407 -1.4037 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 2.9532 3.9975 1.7163 35 1 3.6133 6.6418 -3.5130 36 1 4.0599 7.1986 -1.8775 37 1 6.3445 6.1998 -2.1202 38 1 6.0157 7.3688 -3.4242 39 1 6.9658 5.3238 -4.3833 40 1 5.2679 5.4831 -4.8812 41 1 2.3697 3.3235 -3.8768 42 1 3.1852 4.7615 -4.5765 43 1 4.1125 3.2012 -6.0518 44 1 3.8214 1.8372 -4.9365 45 1 5.0973 0.5670 -7.3386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049925725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:48 Heat of formation + Delta-G solvation = 25.120647 kcal Electronic energy + Delta-G solvation = -27855.430018 eV Core-core repulsion = 24192.818468 eV Total energy + Delta-G solvation = -3662.611550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87306 -40.80410 -39.43740 -36.59324 -35.06457 -34.20724 -33.97950 -31.18306 -30.72369 -29.70962 -27.29324 -26.42117 -25.81821 -24.03907 -23.44064 -22.72380 -21.85727 -20.88058 -19.72523 -19.30397 -18.74417 -17.89999 -17.33056 -16.78043 -16.53602 -16.27233 -15.95423 -15.59366 -15.47864 -15.11856 -14.99320 -14.88193 -14.57161 -14.31328 -14.15171 -13.78921 -13.58098 -13.23498 -13.19735 -12.83817 -12.71680 -12.63321 -12.53051 -12.41672 -12.29276 -12.09965 -12.04883 -11.94571 -11.68416 -11.54788 -11.46999 -11.21406 -10.73636 -10.65347 -10.32621 -9.92734 -9.69853 -8.87407 -7.81927 -5.16834 -0.81854 0.09541 0.52795 1.33206 1.48327 1.49794 1.58543 1.75800 1.99947 2.50905 2.99757 3.29442 3.35779 3.61893 3.68875 3.79220 3.86796 3.96880 4.03063 4.13574 4.18012 4.25048 4.28729 4.33859 4.50886 4.55108 4.62851 4.66610 4.74068 4.78795 4.95198 4.96880 4.98959 5.01436 5.06733 5.08441 5.29533 5.31139 5.41205 5.47580 5.55660 5.65174 5.78316 6.12482 6.22544 6.53923 6.85914 7.12885 7.77114 8.41699 9.28072 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.004843 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.892687 B = 5780.486841 C = 7718.018646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C 0.046 3.954 4 N -0.499 5.499 5 C 0.119 3.881 6 C -0.327 4.327 7 C 0.598 3.402 8 O -0.558 6.558 9 N -0.586 5.586 10 C 0.111 3.889 11 C -0.119 4.119 12 C -0.122 4.122 13 C 0.153 3.847 14 H 0.053 0.947 15 C 0.126 3.874 16 H 0.095 0.905 17 C -0.139 4.139 18 C 0.193 3.807 19 N -0.613 5.613 20 C -0.233 4.233 21 H 0.079 0.921 22 C -0.056 4.056 23 N -0.947 5.947 24 Si 0.969 3.031 25 H -0.270 1.270 26 H -0.293 1.293 27 H -0.295 1.295 28 S 0.218 5.782 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.193 0.807 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.011 0.989 44 H 0.026 0.974 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 3.062 10.578 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.228 4.228 4 N -0.214 5.214 5 C -0.040 4.040 6 C -0.451 4.451 7 C 0.385 3.615 8 O -0.439 6.439 9 N -0.316 5.316 10 C -0.010 4.010 11 C -0.157 4.157 12 C -0.162 4.162 13 C 0.046 3.954 14 H 0.071 0.929 15 C 0.019 3.981 16 H 0.112 0.888 17 C -0.178 4.178 18 C 0.068 3.932 19 N -0.338 5.338 20 C -0.362 4.362 21 H 0.097 0.903 22 C -0.250 4.250 23 N -0.596 5.596 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.222 1.222 28 S 0.477 5.523 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.210 0.790 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.029 0.971 44 H 0.044 0.956 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.099 2.932 10.156 13.317 hybrid contribution 1.089 -0.119 -0.064 1.097 sum -7.010 2.813 10.092 12.606 Atomic orbital electron populations 1.21768 0.92002 1.04060 1.02300 1.20528 0.97831 0.85595 1.05729 1.28404 0.98772 1.03324 0.92290 1.66318 1.16755 1.06192 1.32106 1.22286 0.94697 0.91676 0.95293 1.25702 1.19717 1.00961 0.98715 1.16957 0.77112 0.86419 0.80976 1.90770 1.58915 1.37707 1.56493 1.47512 1.58233 1.08135 1.17689 1.22164 0.96154 0.82799 0.99877 1.22026 0.94978 0.99596 0.99141 1.21945 1.01280 0.94600 0.98365 1.21470 0.93804 0.90329 0.89798 0.92939 1.22032 0.96519 0.86389 0.93174 0.88833 1.23090 0.98296 1.01050 0.95371 1.20880 0.82701 0.95753 0.93854 1.44882 1.04935 1.46783 1.37202 1.19364 0.88357 1.16124 1.12351 0.90288 1.25460 0.98953 1.01107 0.99463 1.70125 1.21047 1.39938 1.28457 0.85149 0.79298 0.78076 0.77638 1.19413 1.21988 1.22217 1.84740 1.55602 1.02701 1.09265 0.92610 0.92403 0.89023 0.88035 0.87687 0.79022 0.89520 0.88476 0.91555 0.88454 0.93054 0.92656 0.90089 0.90291 0.97101 0.95614 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.89 71.98 0.71 -1.34 16 2 C -0.06 -0.98 6.51 29.85 0.19 -0.79 16 3 C 0.05 1.10 6.64 88.46 0.59 1.69 16 4 N -0.50 -13.54 10.51 -190.31 -2.00 -15.54 16 5 C 0.12 3.29 11.19 84.23 0.94 4.24 16 6 C -0.33 -9.59 5.78 23.88 0.14 -9.45 16 7 C 0.60 18.91 7.57 86.45 0.65 19.56 16 8 O -0.56 -19.67 16.31 -4.31 -0.07 -19.74 16 9 N -0.59 -17.46 2.70 -797.06 -2.16 -19.62 16 10 C 0.11 2.83 6.21 86.83 0.54 3.37 16 11 C -0.12 -2.98 6.17 31.01 0.19 -2.79 16 12 C -0.12 -3.99 5.12 30.51 0.16 -3.84 16 13 C 0.15 5.80 3.54 45.08 0.16 5.96 16 14 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 15 C 0.13 4.13 2.28 46.15 0.11 4.24 16 16 H 0.09 3.18 4.05 -19.14 -0.08 3.10 16 17 C -0.14 -4.68 5.84 31.61 0.18 -4.49 16 18 C 0.19 8.70 5.24 86.79 0.45 9.15 16 19 N -0.61 -28.80 2.95 -667.03 -1.97 -30.77 16 20 C -0.23 -12.23 10.29 84.03 0.86 -11.36 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 22 C -0.06 -3.03 5.49 84.86 0.47 -2.56 16 23 N -0.95 -53.54 10.33 21.65 0.22 -53.32 16 24 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 S 0.22 5.76 17.93 -56.49 -1.01 4.75 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 35 H 0.09 2.02 7.51 -2.39 -0.02 2.00 16 36 H 0.10 2.44 6.93 -2.39 -0.02 2.43 16 37 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.91 7.20 -2.39 -0.02 1.90 16 41 H 0.08 2.45 6.94 -2.39 -0.02 2.44 16 42 H 0.08 2.49 6.81 -2.39 -0.02 2.47 16 43 H 0.01 0.55 7.60 -2.39 -0.02 0.53 16 44 H 0.03 1.29 7.30 -2.39 -0.02 1.27 16 45 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -64.30 361.17 2.33 -61.98 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.93 Total: 14.75 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.35 Total: 11.58 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -5.90 Total: -119.24 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.07 Total: -19.74 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -1.01 Total: 4.75 kcal Total: -64.30 2.33 -61.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049925725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.098 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds