Wall clock time and date at job start Tue Mar 31 2020 18:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47049 * 2 1 4 4 N 1.29431 * 124.80375 * 89.97744 * 3 2 1 5 5 C 1.30944 * 117.36304 * 179.73166 * 4 3 2 6 6 C 1.35668 * 114.19073 * 0.51784 * 5 4 3 7 7 C 1.46678 * 126.12778 * 179.78735 * 6 5 4 8 8 O 1.21688 * 120.00262 * 27.22874 * 7 6 5 9 9 N 1.34777 * 119.99690 * 207.22356 * 7 6 5 10 10 C 1.44505 * 116.63355 * 356.07579 * 9 7 6 11 11 C 1.50528 * 112.65617 * 154.85224 * 10 9 7 12 12 C 1.51330 * 112.60156 * 42.37433 * 11 10 9 13 13 C 1.50707 * 113.44756 * 305.10340 * 12 11 10 14 14 H 1.08999 * 109.33492 * 169.11407 * 13 12 11 15 15 C 1.54184 * 110.50917 * 289.44032 * 13 12 11 16 16 N 1.46922 * 106.26458 * 151.08576 * 15 13 12 17 17 C 1.36938 * 125.37509 * 162.13967 * 16 15 13 18 18 H 1.08001 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00199 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46830 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46980 * 119.99827 * 21 19 17 24 24 H 1.48501 * 109.47069 * 239.99961 * 21 19 17 25 25 C 1.46816 * 109.25036 * 342.15523 * 16 15 13 26 26 C 1.44100 * 116.63170 * 176.05340 * 9 7 6 27 27 H 1.09002 * 108.45985 * 74.37205 * 26 9 7 28 28 S 1.70954 * 124.80589 * 270.00007 * 3 2 1 29 29 H 1.08998 * 109.46850 * 300.00076 * 1 2 3 30 30 H 1.08996 * 109.46830 * 59.99936 * 1 2 3 31 31 H 1.08993 * 109.46872 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47132 * 240.00329 * 2 1 3 33 33 H 1.08996 * 109.46830 * 120.00064 * 2 1 3 34 34 H 1.08004 * 122.90459 * 180.34649 * 5 4 3 35 35 H 1.08997 * 108.84863 * 275.39953 * 10 9 7 36 36 H 1.09006 * 108.84390 * 33.76151 * 10 9 7 37 37 H 1.08997 * 108.22639 * 281.84772 * 11 10 9 38 38 H 1.09007 * 109.10490 * 163.50090 * 11 10 9 39 39 H 1.09003 * 108.67037 * 184.12162 * 12 11 10 40 40 H 1.08997 * 108.66951 * 66.08851 * 12 11 10 41 41 H 1.08997 * 110.09524 * 270.28732 * 15 13 12 42 42 H 1.09003 * 110.08799 * 31.82538 * 15 13 12 43 43 H 0.97010 * 119.99712 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.84141 * 120.40953 * 25 16 15 45 45 H 1.09007 * 109.84190 * 241.31797 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0628 5 6 2.7162 3.3398 0.8932 6 6 2.8412 3.7104 -0.4059 7 6 3.3021 5.0151 -0.8925 8 8 4.0557 5.6864 -0.2128 9 7 2.8910 5.4702 -2.0926 10 6 2.0682 4.5778 -2.8767 11 6 1.1838 5.3096 -3.8504 12 6 1.9026 6.4422 -4.5511 13 6 2.5333 7.4296 -3.6032 14 1 3.1877 8.0986 -4.1619 15 6 1.4489 8.2591 -2.8868 16 7 2.0113 8.6320 -1.5817 17 6 1.5458 9.6364 -0.7757 18 1 0.6977 10.2287 -1.0861 19 6 2.1640 9.8934 0.4403 20 7 3.1972 9.1712 0.8188 21 14 1.5295 11.2640 1.5395 22 1 0.3671 11.9214 0.8899 23 1 1.1112 10.6966 2.8466 24 1 2.6061 12.2637 1.7555 25 6 3.1513 7.7581 -1.2783 26 6 3.3169 6.7967 -2.4609 27 1 4.3721 6.7577 -2.7313 28 16 2.3576 2.3408 -1.4037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9546 3.9971 1.7164 35 1 2.7155 3.9013 -3.4349 36 1 1.4454 3.9896 -2.2027 37 1 0.3343 5.7151 -3.3010 38 1 0.8174 4.6061 -4.5980 39 1 1.1883 6.9714 -5.1819 40 1 2.6822 6.0209 -5.1858 41 1 1.2189 9.1539 -3.4651 42 1 0.5485 7.6600 -2.7504 43 1 3.6295 9.3510 1.6684 44 1 4.0526 8.3572 -1.1491 45 1 2.9509 7.1906 -0.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050213097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:57 Heat of formation + Delta-G solvation = 54.849736 kcal Electronic energy + Delta-G solvation = -27891.654310 eV Core-core repulsion = 24230.331910 eV Total energy + Delta-G solvation = -3661.322400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73642 -39.64616 -37.61383 -35.58879 -34.16845 -33.25350 -32.15150 -30.22789 -29.38630 -27.33379 -25.97908 -25.71511 -24.12300 -23.17255 -22.37258 -21.63195 -20.25392 -18.91886 -18.38147 -17.88798 -16.95232 -16.30094 -16.00514 -15.84936 -15.12398 -14.74801 -14.49991 -14.32718 -14.31571 -14.05200 -13.90635 -13.76620 -13.31369 -13.07107 -12.61539 -12.48593 -12.30561 -12.01641 -11.79412 -11.64346 -11.44674 -11.40443 -11.14981 -10.97017 -10.83722 -10.67996 -10.37438 -10.26267 -10.06031 -9.90784 -9.69771 -9.62595 -9.32654 -9.10914 -8.83809 -8.45202 -8.04341 -6.68444 -5.56696 -2.93274 0.34146 1.15949 1.57195 2.61245 3.19872 3.45937 3.50572 3.52915 3.53848 3.97184 4.57916 4.63483 4.69372 4.80536 4.84882 4.91759 4.96230 5.07071 5.15361 5.31095 5.34097 5.43892 5.47028 5.50922 5.62246 5.65672 5.68135 5.77749 5.88127 5.88349 5.93481 6.04958 6.16675 6.19120 6.19472 6.41714 6.57604 6.69772 6.74858 7.05149 7.51181 7.66854 7.75130 7.82291 8.09318 8.38147 8.55447 9.32986 9.94049 10.58220 11.51873 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.004150 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.423590 B = 6745.038034 C = 7950.986477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.029 3.971 4 N -0.477 5.477 5 C 0.112 3.888 6 C -0.277 4.277 7 C 0.574 3.426 8 O -0.483 6.483 9 N -0.581 5.581 10 C 0.102 3.898 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.103 4.103 14 H 0.083 0.917 15 C 0.142 3.858 16 N -0.607 5.607 17 C -0.235 4.235 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.908 5.908 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.166 3.834 26 C 0.134 3.866 27 H 0.061 0.939 28 S 0.174 5.826 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.187 0.813 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.033 0.967 42 H 0.015 0.985 43 H 0.252 0.748 44 H 0.055 0.945 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 -19.163 -10.307 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.246 4.246 4 N -0.191 5.191 5 C -0.044 4.044 6 C -0.401 4.401 7 C 0.358 3.642 8 O -0.357 6.357 9 N -0.315 5.315 10 C -0.023 4.023 11 C -0.161 4.161 12 C -0.139 4.139 13 C -0.122 4.122 14 H 0.101 0.899 15 C 0.015 3.985 16 N -0.334 5.334 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.554 5.554 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.041 3.959 26 C 0.030 3.970 27 H 0.079 0.921 28 S 0.431 5.569 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.204 0.796 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.032 0.968 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.385 -19.146 -10.350 22.026 hybrid contribution -0.142 1.310 1.355 1.890 sum -3.527 -17.836 -8.995 20.285 Atomic orbital electron populations 1.21778 0.93388 1.02521 1.02923 1.20237 0.96812 0.87589 1.04206 1.27718 1.01939 1.01962 0.92932 1.66234 1.15147 1.06079 1.31606 1.22164 0.95295 0.91280 0.95669 1.25963 1.15894 1.00523 0.97725 1.16907 0.82011 0.83520 0.81747 1.90966 1.33657 1.55515 1.55599 1.46584 1.51089 1.15989 1.17788 1.20869 0.94264 0.92287 0.94929 1.20871 0.99087 0.98066 0.98104 1.20488 0.99789 0.95920 0.97735 1.21358 0.98525 0.97152 0.95200 0.89867 1.21378 0.93819 0.95385 0.87898 1.44395 1.34132 1.37924 1.16914 1.19016 1.11387 1.07740 0.98196 0.90603 1.24841 0.98128 0.99376 0.97904 1.70022 1.22775 1.40555 1.22050 0.86120 0.77823 0.81512 0.80740 1.20627 1.21824 1.21778 1.21671 0.91354 0.89507 0.93319 1.21131 0.96491 0.81261 0.98082 0.92119 1.84059 1.59044 1.03059 1.10770 0.91796 0.92281 0.91395 0.89672 0.88816 0.79571 0.92434 0.90502 0.91020 0.90480 0.91215 0.92325 0.94904 0.96790 0.93753 0.92693 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 37.16 0.37 -0.67 16 2 C -0.05 -0.38 6.51 -27.88 -0.18 -0.56 16 3 C 0.03 0.34 6.64 -13.29 -0.09 0.25 16 4 N -0.48 -7.03 10.51 -11.50 -0.12 -7.15 16 5 C 0.11 1.82 11.19 -18.85 -0.21 1.61 16 6 C -0.28 -4.51 5.77 -37.10 -0.21 -4.72 16 7 C 0.57 11.29 6.77 -12.85 -0.09 11.20 16 8 O -0.48 -11.58 14.14 5.20 0.07 -11.50 16 9 N -0.58 -10.35 3.09 -172.66 -0.53 -10.88 16 10 C 0.10 1.35 4.62 -6.34 -0.03 1.32 16 11 C -0.12 -1.46 5.75 -28.81 -0.17 -1.62 16 12 C -0.10 -1.27 5.19 -28.72 -0.15 -1.42 16 13 C -0.10 -1.75 3.08 -91.51 -0.28 -2.03 16 14 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.14 2.95 6.65 -3.19 -0.02 2.93 16 16 N -0.61 -16.07 3.39 -171.73 -0.58 -16.65 16 17 C -0.24 -6.79 10.25 -15.06 -0.15 -6.95 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 20 N -0.91 -28.11 10.26 55.49 0.57 -27.54 16 21 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 C 0.17 4.30 4.13 -3.71 -0.02 4.28 16 26 C 0.13 2.66 3.11 -69.41 -0.22 2.45 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 S 0.17 1.97 18.50 -107.50 -1.99 -0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.19 3.10 8.06 -52.48 -0.42 2.68 16 35 H 0.06 0.64 7.56 -51.93 -0.39 0.25 16 36 H 0.08 0.99 4.61 -26.73 -0.12 0.87 16 37 H 0.07 0.96 6.98 -51.93 -0.36 0.60 16 38 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.01 0.30 6.68 -51.93 -0.35 -0.05 16 43 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.06 1.62 7.37 -51.93 -0.38 1.23 16 45 H 0.08 2.34 4.54 -51.93 -0.24 2.11 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -35.00 357.28 -10.23 -45.22 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -6.46 Total: -0.59 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.54 Total: 5.82 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.67 Total: -62.21 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.99 Total: -0.02 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.00 -10.23 -45.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050213097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.070 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds