Wall clock time and date at job start Tue Mar 31 2020 18:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.47049 * 2 1 4 4 N 1.29431 * 124.80375 * 89.97744 * 3 2 1 5 5 C 1.30944 * 117.36304 * 179.73166 * 4 3 2 6 6 C 1.35668 * 114.19073 * 0.51784 * 5 4 3 7 7 C 1.46678 * 126.12778 * 179.78735 * 6 5 4 8 8 O 1.21688 * 120.00262 * 27.22874 * 7 6 5 9 9 N 1.34777 * 119.99690 * 207.22356 * 7 6 5 10 10 C 1.44505 * 116.63355 * 356.07579 * 9 7 6 11 11 C 1.50528 * 112.65617 * 154.85224 * 10 9 7 12 12 C 1.51330 * 112.60156 * 42.37433 * 11 10 9 13 13 C 1.50707 * 113.44756 * 305.10340 * 12 11 10 14 14 H 1.08999 * 109.33492 * 169.11407 * 13 12 11 15 15 C 1.54184 * 110.50917 * 289.44032 * 13 12 11 16 16 N 1.46922 * 106.26458 * 151.08576 * 15 13 12 17 17 C 1.36938 * 125.37509 * 162.13967 * 16 15 13 18 18 H 1.08001 * 119.99871 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00166 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00199 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46830 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.46980 * 119.99827 * 21 19 17 24 24 H 1.48501 * 109.47069 * 239.99961 * 21 19 17 25 25 C 1.46816 * 109.25036 * 342.15523 * 16 15 13 26 26 C 1.44100 * 116.63170 * 176.05340 * 9 7 6 27 27 H 1.09002 * 108.45985 * 74.37205 * 26 9 7 28 28 S 1.70954 * 124.80589 * 270.00007 * 3 2 1 29 29 H 1.08998 * 109.46850 * 300.00076 * 1 2 3 30 30 H 1.08996 * 109.46830 * 59.99936 * 1 2 3 31 31 H 1.08993 * 109.46872 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47132 * 240.00329 * 2 1 3 33 33 H 1.08996 * 109.46830 * 120.00064 * 2 1 3 34 34 H 1.08004 * 122.90459 * 180.34649 * 5 4 3 35 35 H 1.08997 * 108.84863 * 275.39953 * 10 9 7 36 36 H 1.09006 * 108.84390 * 33.76151 * 10 9 7 37 37 H 1.08997 * 108.22639 * 281.84772 * 11 10 9 38 38 H 1.09007 * 109.10490 * 163.50090 * 11 10 9 39 39 H 1.09003 * 108.67037 * 184.12162 * 12 11 10 40 40 H 1.08997 * 108.66951 * 66.08851 * 12 11 10 41 41 H 1.08997 * 110.09524 * 270.28732 * 15 13 12 42 42 H 1.09003 * 110.08799 * 31.82538 * 15 13 12 43 43 H 0.97010 * 119.99712 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.84141 * 120.40953 * 25 16 15 45 45 H 1.09007 * 109.84190 * 241.31797 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0628 5 6 2.7162 3.3398 0.8932 6 6 2.8412 3.7104 -0.4059 7 6 3.3021 5.0151 -0.8925 8 8 4.0557 5.6864 -0.2128 9 7 2.8910 5.4702 -2.0926 10 6 2.0682 4.5778 -2.8767 11 6 1.1838 5.3096 -3.8504 12 6 1.9026 6.4422 -4.5511 13 6 2.5333 7.4296 -3.6032 14 1 3.1877 8.0986 -4.1619 15 6 1.4489 8.2591 -2.8868 16 7 2.0113 8.6320 -1.5817 17 6 1.5458 9.6364 -0.7757 18 1 0.6977 10.2287 -1.0861 19 6 2.1640 9.8934 0.4403 20 7 3.1972 9.1712 0.8188 21 14 1.5295 11.2640 1.5395 22 1 0.3671 11.9214 0.8899 23 1 1.1112 10.6966 2.8466 24 1 2.6061 12.2637 1.7555 25 6 3.1513 7.7581 -1.2783 26 6 3.3169 6.7967 -2.4609 27 1 4.3721 6.7577 -2.7313 28 16 2.3576 2.3408 -1.4037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.9546 3.9971 1.7164 35 1 2.7155 3.9013 -3.4349 36 1 1.4454 3.9896 -2.2027 37 1 0.3343 5.7151 -3.3010 38 1 0.8174 4.6061 -4.5980 39 1 1.1883 6.9714 -5.1819 40 1 2.6822 6.0209 -5.1858 41 1 1.2189 9.1539 -3.4651 42 1 0.5485 7.6600 -2.7504 43 1 3.6295 9.3510 1.6684 44 1 4.0526 8.3572 -1.1491 45 1 2.9509 7.1906 -0.3695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050213097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:56 Heat of formation + Delta-G solvation = 30.274025 kcal Electronic energy + Delta-G solvation = -27892.719993 eV Core-core repulsion = 24230.331910 eV Total energy + Delta-G solvation = -3662.388083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17904 -40.79555 -39.12927 -37.21077 -35.02553 -34.70701 -33.87279 -31.84931 -30.77091 -28.87536 -27.43542 -27.04822 -25.67015 -24.25102 -23.49912 -23.09274 -21.94952 -20.13867 -19.64981 -19.18968 -18.74479 -17.67892 -17.46074 -17.24042 -16.74660 -16.07932 -15.79999 -15.63000 -15.58929 -15.35610 -15.12880 -14.93908 -14.46570 -14.37315 -14.14927 -13.78278 -13.76642 -13.22698 -13.11689 -12.96285 -12.82580 -12.65755 -12.59447 -12.54263 -12.10155 -12.05512 -12.01767 -11.83174 -11.74331 -11.50150 -11.35196 -10.94825 -10.72322 -10.60274 -10.27742 -9.93835 -9.48118 -8.85160 -7.80737 -5.20478 -0.77660 0.09353 0.51229 1.38599 1.39903 1.42293 1.52589 1.81598 2.15882 2.47338 3.03481 3.33107 3.38566 3.64794 3.71548 3.80031 3.89443 3.92589 3.95852 4.03773 4.20903 4.29613 4.33594 4.38811 4.50114 4.65401 4.67680 4.69505 4.78210 4.88473 4.94382 4.99639 5.02111 5.10370 5.11361 5.16769 5.33511 5.37041 5.41115 5.45167 5.48408 5.75478 5.96571 6.20098 6.29311 6.59311 7.03746 7.12166 7.80108 8.42393 9.25766 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.004150 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.423590 B = 6745.038034 C = 7950.986477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.033 3.967 4 N -0.505 5.505 5 C 0.104 3.896 6 C -0.321 4.321 7 C 0.565 3.435 8 O -0.547 6.547 9 N -0.578 5.578 10 C 0.088 3.912 11 C -0.122 4.122 12 C -0.098 4.098 13 C -0.088 4.088 14 H 0.091 0.909 15 C 0.135 3.865 16 N -0.630 5.630 17 C -0.246 4.246 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.943 5.943 21 Si 0.977 3.023 22 H -0.260 1.260 23 H -0.296 1.296 24 H -0.292 1.292 25 C 0.179 3.821 26 C 0.144 3.856 27 H 0.057 0.943 28 S 0.275 5.725 29 H 0.042 0.958 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.162 0.838 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.128 0.872 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.022 0.978 43 H 0.241 0.759 44 H -0.001 1.001 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 -22.097 -14.153 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.241 4.241 4 N -0.220 5.220 5 C -0.053 4.053 6 C -0.445 4.445 7 C 0.352 3.648 8 O -0.426 6.426 9 N -0.310 5.310 10 C -0.035 4.035 11 C -0.159 4.159 12 C -0.136 4.136 13 C -0.108 4.108 14 H 0.109 0.891 15 C 0.010 3.990 16 N -0.357 5.357 17 C -0.375 4.375 18 H 0.103 0.897 19 C -0.263 4.263 20 N -0.591 5.591 21 Si 0.805 3.195 22 H -0.184 1.184 23 H -0.224 1.224 24 H -0.219 1.219 25 C 0.054 3.946 26 C 0.040 3.960 27 H 0.075 0.925 28 S 0.534 5.466 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.179 0.821 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.788 -22.116 -14.291 26.960 hybrid contribution 0.531 2.110 2.514 3.325 sum -5.256 -20.007 -11.777 23.803 Atomic orbital electron populations 1.21798 0.92458 1.04027 1.02209 1.20549 0.97409 0.84981 1.06142 1.28595 0.99383 1.03272 0.92823 1.66288 1.16897 1.05547 1.33244 1.21975 0.95788 0.92062 0.95521 1.25699 1.18279 1.01339 0.99199 1.17461 0.81188 0.84381 0.81777 1.90926 1.36624 1.57768 1.57318 1.46638 1.51118 1.15444 1.17846 1.21320 0.94742 0.92228 0.95173 1.20972 0.97714 0.98719 0.98519 1.20535 1.01054 0.95182 0.96790 1.21381 0.97045 0.97788 0.94574 0.89091 1.21640 0.95114 0.96445 0.85793 1.44733 1.34443 1.37623 1.18928 1.19473 1.11227 1.08151 0.98628 0.89739 1.25761 0.98651 1.02136 0.99709 1.70338 1.24407 1.42492 1.21861 0.85032 0.77694 0.78426 0.78334 1.18366 1.22353 1.21880 1.21206 0.89009 0.89479 0.94926 1.20736 0.97338 0.81429 0.96522 0.92458 1.83399 1.56726 0.98631 1.07842 0.93901 0.91637 0.88836 0.86209 0.88431 0.82124 0.89023 0.90172 0.92874 0.85409 0.88792 0.89416 0.94032 0.96048 0.94933 0.98253 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.90 71.98 0.71 -0.84 16 2 C -0.05 -0.61 6.51 29.85 0.19 -0.41 16 3 C 0.03 0.70 6.64 88.46 0.59 1.29 16 4 N -0.50 -15.03 10.51 -190.29 -2.00 -17.03 16 5 C 0.10 3.65 11.19 84.23 0.94 4.59 16 6 C -0.32 -10.74 5.77 23.88 0.14 -10.60 16 7 C 0.57 23.59 6.77 86.45 0.58 24.17 16 8 O -0.55 -29.10 14.14 -4.31 -0.06 -29.16 16 9 N -0.58 -20.63 3.09 -818.38 -2.53 -23.16 16 10 C 0.09 2.04 4.62 85.95 0.40 2.44 16 11 C -0.12 -2.27 5.75 29.25 0.17 -2.10 16 12 C -0.10 -1.99 5.19 29.30 0.15 -1.83 16 13 C -0.09 -2.87 3.08 -11.37 -0.03 -2.90 16 14 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 15 C 0.13 5.55 6.65 86.70 0.58 6.13 16 16 N -0.63 -34.77 3.39 -697.23 -2.36 -37.14 16 17 C -0.25 -14.71 10.25 84.03 0.86 -13.85 16 18 H 0.08 4.77 7.83 -2.91 -0.02 4.75 16 19 C -0.07 -4.27 5.48 84.86 0.47 -3.80 16 20 N -0.94 -62.95 10.26 21.65 0.22 -62.73 16 21 Si 0.98 49.16 29.55 68.60 2.03 51.18 16 22 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 24 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 25 C 0.18 9.98 4.13 86.42 0.36 10.34 16 26 C 0.14 5.90 3.11 45.31 0.14 6.04 16 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 28 S 0.28 5.42 18.50 -56.49 -1.05 4.37 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.16 6.19 8.06 -2.91 -0.02 6.17 16 35 H 0.09 1.56 7.56 -2.39 -0.02 1.54 16 36 H 0.08 1.81 4.61 -18.41 -0.08 1.73 16 37 H 0.05 1.22 6.98 -2.39 -0.02 1.20 16 38 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.02 0.87 6.68 -2.39 -0.02 0.86 16 43 H 0.24 15.84 8.31 -92.70 -0.77 15.07 16 44 H 0.00 -0.05 7.37 -2.39 -0.02 -0.06 16 45 H 0.04 2.66 4.54 -2.38 -0.01 2.65 16 Total: -1.00 -87.58 357.28 1.42 -86.16 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.93 Total: 8.84 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.24 Total: 18.65 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -6.67 Total: -140.05 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.18 kcal Atomic # 16 Polarization: 5.42 SS G_CDS: -1.05 Total: 4.37 kcal Total: -87.58 1.42 -86.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050213097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.437 kcal (2) G-P(sol) polarization free energy of solvation -87.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds