Wall clock time and date at job start Tue Mar 31 2020 18:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.50698 * 109.47540 * 239.99994 * 2 1 3 5 5 N 1.29436 * 124.80134 * 60.02219 * 4 2 1 6 6 C 1.30943 * 117.36165 * 179.97438 * 5 4 2 7 7 C 1.35658 * 114.19352 * 0.02562 * 6 5 4 8 8 C 1.46677 * 126.13417 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00015 * 355.00869 * 8 7 6 10 10 N 1.34777 * 120.00581 * 175.01224 * 8 7 6 11 11 C 1.47392 * 135.84917 * 4.72884 * 10 8 7 12 12 C 1.52071 * 87.40914 * 154.39140 * 11 10 8 13 13 C 1.47390 * 135.85623 * 185.10455 * 10 8 7 14 14 C 1.53510 * 117.21316 * 267.27835 * 12 11 10 15 15 C 1.54625 * 102.70424 * 262.93039 * 14 12 11 16 16 N 1.47149 * 107.37706 * 339.38410 * 15 14 12 17 17 C 1.36942 * 125.58051 * 179.06282 * 16 15 14 18 18 H 1.08002 * 119.99822 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99973 * 0.02837 * 17 16 15 20 20 N 1.31613 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47016 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47246 * 119.99909 * 21 19 17 24 24 H 1.48500 * 109.47181 * 239.99879 * 21 19 17 25 25 C 1.47756 * 108.83911 * 359.08997 * 16 15 14 26 26 S 1.70949 * 124.80795 * 239.72292 * 4 2 1 27 27 H 1.08998 * 109.46828 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47544 * 300.00148 * 1 2 3 29 29 H 1.09007 * 109.46863 * 60.00234 * 1 2 3 30 30 H 1.08997 * 109.47315 * 120.00054 * 2 1 3 31 31 H 1.09008 * 109.46596 * 59.99687 * 3 2 1 32 32 H 1.09003 * 109.47299 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47025 * 300.00232 * 3 2 1 34 34 H 1.08000 * 122.89986 * 180.02562 * 6 5 4 35 35 H 1.09004 * 113.54335 * 269.00249 * 11 10 8 36 36 H 1.08994 * 113.54643 * 39.67990 * 11 10 8 37 37 H 1.09008 * 113.54249 * 320.32021 * 13 10 8 38 38 H 1.09001 * 113.54660 * 90.92291 * 13 10 8 39 39 H 1.09000 * 110.76706 * 21.23641 * 14 12 11 40 40 H 1.09005 * 110.76735 * 144.62672 * 14 12 11 41 41 H 1.09003 * 109.86523 * 98.83246 * 15 14 12 42 42 H 1.09005 * 109.86962 * 219.93658 * 15 14 12 43 43 H 0.97001 * 120.00078 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.40183 * 263.50378 * 25 16 15 45 45 H 1.09000 * 110.40647 * 141.07956 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7780 -0.3498 -2.4472 6 6 2.2912 -1.0747 -3.4095 7 6 3.0335 -2.1253 -2.9787 8 6 3.7240 -3.1022 -3.8274 9 8 3.5853 -3.0640 -5.0358 10 7 4.5122 -4.0421 -3.2691 11 6 4.8536 -4.4569 -1.8965 12 6 5.1588 -5.8349 -2.4628 13 6 5.4130 -5.0980 -3.7651 14 6 4.0204 -6.8648 -2.4555 15 6 4.3086 -7.6812 -1.1743 16 7 5.7254 -7.4776 -0.8330 17 6 6.3701 -8.0173 0.2480 18 1 7.4165 -7.8070 0.4131 19 6 5.6786 -8.8347 1.1316 20 7 4.4033 -9.0906 0.9306 21 14 6.5581 -9.5714 2.6057 22 1 7.9769 -9.1329 2.6056 23 1 5.8991 -9.1133 3.8551 24 1 6.4973 -11.0532 2.5287 25 6 6.3385 -6.5951 -1.8471 26 16 3.0249 -2.1022 -1.2167 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 2.1369 -0.8550 -4.4556 35 1 5.7292 -3.9483 -1.4930 36 1 4.0042 -4.4434 -1.2136 37 1 5.0307 -5.6198 -4.6425 38 1 6.4450 -4.7686 -3.8861 39 1 3.0517 -6.3696 -2.3884 40 1 4.0697 -7.5016 -3.3388 41 1 3.6768 -7.3273 -0.3596 42 1 4.1204 -8.7389 -1.3588 43 1 3.9202 -9.6621 1.5478 44 1 6.8479 -7.1868 -2.6077 45 1 7.0340 -5.9005 -1.3759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073501291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:09 Heat of formation + Delta-G solvation = 71.115139 kcal Electronic energy + Delta-G solvation = -26524.327842 eV Core-core repulsion = 22863.710763 eV Total energy + Delta-G solvation = -3660.617079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80893 -40.06941 -38.21203 -35.77036 -35.62601 -32.31686 -30.68947 -29.37606 -28.67628 -27.49396 -26.43761 -26.17138 -25.47453 -23.81824 -22.38598 -20.96003 -20.32656 -18.80139 -18.44103 -18.21997 -16.87802 -16.55380 -16.31789 -15.77352 -15.28778 -14.87187 -14.84257 -14.53628 -14.46639 -14.04726 -13.85007 -13.70999 -13.14735 -13.05662 -12.55202 -12.44490 -12.37308 -12.09841 -11.99748 -11.90451 -11.69508 -11.55244 -11.34333 -11.07851 -10.97184 -10.77520 -10.54890 -10.33135 -10.14400 -10.01849 -9.85959 -9.75754 -9.65616 -9.62675 -9.13206 -8.65767 -8.64713 -6.89815 -5.76586 -3.10569 0.10171 1.02246 1.45801 2.32366 2.71851 3.13284 3.36204 3.42085 3.44416 3.76547 4.31014 4.44816 4.47419 4.56929 4.68897 4.71900 4.86714 5.07648 5.14215 5.16533 5.32868 5.40893 5.44803 5.45330 5.50999 5.55137 5.59263 5.60569 5.70150 5.73082 5.78278 5.83530 5.89567 6.02844 6.07568 6.16484 6.39172 6.44672 6.58371 6.63372 7.42988 7.50348 7.55419 7.65434 7.77075 8.02279 8.18906 9.15924 9.75950 10.41094 11.34967 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003192 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.729803 B = 8771.057555 C =10299.677266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 C -0.139 4.139 4 C 0.051 3.949 5 N -0.477 5.477 6 C 0.116 3.884 7 C -0.288 4.288 8 C 0.622 3.378 9 O -0.535 6.535 10 N -0.640 5.640 11 C 0.113 3.887 12 C -0.102 4.102 13 C 0.123 3.877 14 C -0.118 4.118 15 C 0.179 3.821 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.154 3.846 26 S 0.189 5.811 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.186 0.814 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 17.519 -3.095 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.198 4.198 4 C -0.223 4.223 5 N -0.190 5.190 6 C -0.042 4.042 7 C -0.412 4.412 8 C 0.411 3.589 9 O -0.414 6.414 10 N -0.375 5.375 11 C -0.010 4.010 12 C -0.104 4.104 13 C 0.001 3.999 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.097 0.903 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.027 3.973 26 S 0.448 5.552 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.203 0.797 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.046 0.954 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.328 17.385 -2.893 18.148 hybrid contribution 0.272 -0.262 -0.115 0.395 sum -4.056 17.123 -3.008 17.852 Atomic orbital electron populations 1.21811 0.92554 1.02620 1.02935 1.19920 0.97209 0.96220 0.90895 1.21808 1.01224 0.93844 1.02958 1.27675 0.99600 0.97858 0.97175 1.66154 1.23789 1.30637 0.98448 1.22135 0.92427 0.89360 1.00283 1.25709 1.12929 1.05903 0.96697 1.16142 0.78329 0.78275 0.86146 1.90824 1.64440 1.72689 1.13480 1.49677 1.43581 1.33149 1.11046 1.23048 1.00669 0.93076 0.84208 1.22170 1.00101 0.93542 0.94569 1.22812 0.93568 0.85089 0.98416 1.22489 0.95639 0.96318 1.01172 1.21232 0.85451 0.97009 0.90831 1.44550 1.06765 1.55525 1.26273 1.19087 0.93862 1.23209 0.99500 0.90312 1.24796 0.96072 1.00244 0.99241 1.69965 1.07590 1.41283 1.37982 0.86058 0.78542 0.78775 0.82456 1.20497 1.21774 1.21774 1.21140 0.92224 0.92125 0.91804 1.84384 1.44669 1.24582 1.01594 0.92328 0.91444 0.91390 0.88974 0.91451 0.92455 0.91384 0.79727 0.89013 0.89989 0.90014 0.89363 0.92143 0.91575 0.93465 0.93690 0.93773 0.95359 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.17 37.16 0.34 -0.72 16 2 C -0.02 -0.17 3.35 -91.77 -0.31 -0.47 16 3 C -0.14 -1.00 9.17 37.16 0.34 -0.66 16 4 C 0.05 0.56 5.90 -13.29 -0.08 0.48 16 5 N -0.48 -5.90 10.49 -11.50 -0.12 -6.02 16 6 C 0.12 1.51 11.09 -18.85 -0.21 1.30 16 7 C -0.29 -3.98 6.47 -37.10 -0.24 -4.22 16 8 C 0.62 9.91 8.03 -12.85 -0.10 9.81 16 9 O -0.54 -9.93 17.65 5.20 0.09 -9.84 16 10 N -0.64 -9.47 3.70 -187.28 -0.69 -10.16 16 11 C 0.11 1.62 6.52 -7.33 -0.05 1.57 16 12 C -0.10 -1.61 1.06 -155.22 -0.16 -1.77 16 13 C 0.12 1.70 8.03 -7.47 -0.06 1.64 16 14 C -0.12 -2.09 6.40 -25.61 -0.16 -2.25 16 15 C 0.18 4.09 5.39 -2.83 -0.02 4.08 16 16 N -0.60 -14.31 3.41 -170.53 -0.58 -14.89 16 17 C -0.23 -6.00 10.28 -15.06 -0.15 -6.16 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -25.99 10.30 55.49 0.57 -25.42 16 21 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C 0.15 2.82 6.70 -3.22 -0.02 2.80 16 26 S 0.19 2.20 20.17 -107.50 -2.17 0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.19 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.09 1.18 8.06 -51.93 -0.42 0.76 16 36 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 37 H 0.08 1.13 8.13 -51.92 -0.42 0.71 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 42 H 0.04 1.15 7.49 -51.93 -0.39 0.77 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -31.21 379.08 -10.18 -41.39 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.99 Total: -2.18 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.98 Total: 5.13 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.82 Total: -56.49 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.17 Total: 0.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.21 -10.18 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073501291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.508 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds