Wall clock time and date at job start Tue Mar 31 2020 18:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47212 * 2 1 4 4 C 1.50698 * 109.47540 * 239.99994 * 2 1 3 5 5 N 1.29436 * 124.80134 * 60.02219 * 4 2 1 6 6 C 1.30943 * 117.36165 * 179.97438 * 5 4 2 7 7 C 1.35658 * 114.19352 * 0.02562 * 6 5 4 8 8 C 1.46677 * 126.13417 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00015 * 355.00869 * 8 7 6 10 10 N 1.34777 * 120.00581 * 175.01224 * 8 7 6 11 11 C 1.47392 * 135.84917 * 4.72884 * 10 8 7 12 12 C 1.52071 * 87.40914 * 154.39140 * 11 10 8 13 13 C 1.47390 * 135.85623 * 185.10455 * 10 8 7 14 14 C 1.53510 * 117.21316 * 267.27835 * 12 11 10 15 15 C 1.54625 * 102.70424 * 262.93039 * 14 12 11 16 16 N 1.47149 * 107.37706 * 339.38410 * 15 14 12 17 17 C 1.36942 * 125.58051 * 179.06282 * 16 15 14 18 18 H 1.08002 * 119.99822 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99973 * 0.02837 * 17 16 15 20 20 N 1.31613 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47016 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47246 * 119.99909 * 21 19 17 24 24 H 1.48500 * 109.47181 * 239.99879 * 21 19 17 25 25 C 1.47756 * 108.83911 * 359.08997 * 16 15 14 26 26 S 1.70949 * 124.80795 * 239.72292 * 4 2 1 27 27 H 1.08998 * 109.46828 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47544 * 300.00148 * 1 2 3 29 29 H 1.09007 * 109.46863 * 60.00234 * 1 2 3 30 30 H 1.08997 * 109.47315 * 120.00054 * 2 1 3 31 31 H 1.09008 * 109.46596 * 59.99687 * 3 2 1 32 32 H 1.09003 * 109.47299 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47025 * 300.00232 * 3 2 1 34 34 H 1.08000 * 122.89986 * 180.02562 * 6 5 4 35 35 H 1.09004 * 113.54335 * 269.00249 * 11 10 8 36 36 H 1.08994 * 113.54643 * 39.67990 * 11 10 8 37 37 H 1.09008 * 113.54249 * 320.32021 * 13 10 8 38 38 H 1.09001 * 113.54660 * 90.92291 * 13 10 8 39 39 H 1.09000 * 110.76706 * 21.23641 * 14 12 11 40 40 H 1.09005 * 110.76735 * 144.62672 * 14 12 11 41 41 H 1.09003 * 109.86523 * 98.83246 * 15 14 12 42 42 H 1.09005 * 109.86962 * 219.93658 * 15 14 12 43 43 H 0.97001 * 120.00078 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.40183 * 263.50378 * 25 16 15 45 45 H 1.09000 * 110.40647 * 141.07956 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7780 -0.3498 -2.4472 6 6 2.2912 -1.0747 -3.4095 7 6 3.0335 -2.1253 -2.9787 8 6 3.7240 -3.1022 -3.8274 9 8 3.5853 -3.0640 -5.0358 10 7 4.5122 -4.0421 -3.2691 11 6 4.8536 -4.4569 -1.8965 12 6 5.1588 -5.8349 -2.4628 13 6 5.4130 -5.0980 -3.7651 14 6 4.0204 -6.8648 -2.4555 15 6 4.3086 -7.6812 -1.1743 16 7 5.7254 -7.4776 -0.8330 17 6 6.3701 -8.0173 0.2480 18 1 7.4165 -7.8070 0.4131 19 6 5.6786 -8.8347 1.1316 20 7 4.4033 -9.0906 0.9306 21 14 6.5581 -9.5714 2.6057 22 1 7.9769 -9.1329 2.6056 23 1 5.8991 -9.1133 3.8551 24 1 6.4973 -11.0532 2.5287 25 6 6.3385 -6.5951 -1.8471 26 16 3.0249 -2.1022 -1.2167 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9563 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 2.1369 -0.8550 -4.4556 35 1 5.7292 -3.9483 -1.4930 36 1 4.0042 -4.4434 -1.2136 37 1 5.0307 -5.6198 -4.6425 38 1 6.4450 -4.7686 -3.8861 39 1 3.0517 -6.3696 -2.3884 40 1 4.0697 -7.5016 -3.3388 41 1 3.6768 -7.3273 -0.3596 42 1 4.1204 -8.7389 -1.3588 43 1 3.9202 -9.6621 1.5478 44 1 6.8479 -7.1868 -2.6077 45 1 7.0340 -5.9005 -1.3759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073501291.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:08 Heat of formation + Delta-G solvation = 52.526453 kcal Electronic energy + Delta-G solvation = -26525.133908 eV Core-core repulsion = 22863.710763 eV Total energy + Delta-G solvation = -3661.423145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04727 -41.05077 -39.48605 -37.34760 -36.36428 -34.11974 -31.93376 -30.93185 -30.05415 -28.06490 -27.72790 -27.32226 -26.73831 -25.45578 -23.27086 -22.17843 -21.92290 -20.06978 -19.40595 -19.35068 -18.59789 -17.70205 -17.44779 -16.95827 -16.73375 -16.24206 -15.91782 -15.80607 -15.60694 -15.25758 -14.93501 -14.87685 -14.32700 -14.14447 -13.83830 -13.73736 -13.71166 -13.38758 -12.99709 -12.89423 -12.80742 -12.69518 -12.66271 -12.30151 -12.16358 -12.01663 -11.96830 -11.92875 -11.84762 -11.71476 -11.34532 -11.16482 -10.70196 -10.66516 -10.60331 -10.12419 -9.78289 -8.83934 -7.79591 -5.14307 -0.86851 0.08387 0.50934 1.30073 1.50732 1.51437 1.57776 1.61269 2.01820 2.53782 2.92067 3.16408 3.33884 3.44854 3.53921 3.72779 3.78474 3.99929 4.01749 4.10628 4.11487 4.18308 4.35924 4.43138 4.46336 4.58488 4.61489 4.66643 4.80849 4.81113 4.82576 4.90856 4.93000 4.97530 5.00736 5.08581 5.14023 5.19206 5.32369 5.37499 5.52871 5.68002 5.80982 6.23767 6.42696 6.53125 6.83415 7.15219 7.82559 8.46648 9.31004 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012955 B = 0.003192 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.729803 B = 8771.057555 C =10299.677266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.136 4.136 4 C 0.062 3.938 5 N -0.491 5.491 6 C 0.120 3.880 7 C -0.315 4.315 8 C 0.622 3.378 9 O -0.570 6.570 10 N -0.641 5.641 11 C 0.117 3.883 12 C -0.096 4.096 13 C 0.130 3.870 14 C -0.104 4.104 15 C 0.191 3.809 16 N -0.625 5.625 17 C -0.232 4.232 18 H 0.088 0.912 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.973 3.027 22 H -0.263 1.263 23 H -0.294 1.294 24 H -0.298 1.298 25 C 0.153 3.847 26 S 0.202 5.798 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.190 0.810 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.013 0.987 42 H 0.005 0.995 43 H 0.244 0.756 44 H 0.039 0.961 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.149 19.307 -2.521 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.047 4.047 3 C -0.195 4.195 4 C -0.212 4.212 5 N -0.205 5.205 6 C -0.039 4.039 7 C -0.439 4.439 8 C 0.412 3.588 9 O -0.451 6.451 10 N -0.374 5.374 11 C -0.005 4.005 12 C -0.098 4.098 13 C 0.009 3.991 14 C -0.142 4.142 15 C 0.065 3.935 16 N -0.351 5.351 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.226 1.226 25 C 0.027 3.973 26 S 0.462 5.538 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.207 0.793 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.032 0.968 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.239 19.187 -2.326 19.597 hybrid contribution -0.070 -0.776 -0.270 0.824 sum -3.310 18.411 -2.595 18.885 Atomic orbital electron populations 1.21808 0.91930 1.02374 1.03566 1.20187 0.97671 0.96795 0.90067 1.21798 1.01127 0.93005 1.03538 1.28278 0.98121 0.97081 0.97711 1.66224 1.24455 1.30952 0.98863 1.22300 0.91741 0.89032 1.00817 1.25569 1.14235 1.06262 0.97826 1.16344 0.78103 0.78454 0.85919 1.90797 1.65670 1.73775 1.14905 1.49656 1.43437 1.33004 1.11283 1.23098 1.01354 0.92100 0.83977 1.21976 0.97942 0.93470 0.96426 1.22880 0.94951 0.84289 0.97018 1.22281 0.96808 0.96434 0.98708 1.20904 0.85093 0.95382 0.92078 1.44822 1.07264 1.56250 1.26778 1.19496 0.94353 1.22370 0.99906 0.89433 1.25583 0.96806 1.01457 1.02106 1.70184 1.08985 1.42228 1.38777 0.85075 0.78273 0.77260 0.79132 1.18748 1.22165 1.22582 1.21308 0.93183 0.91858 0.90912 1.84269 1.44805 1.24832 0.99892 0.93009 0.89154 0.92450 0.87281 0.89209 0.92584 0.92488 0.79321 0.86824 0.90556 0.89812 0.86527 0.91619 0.90557 0.96838 0.97678 0.94646 0.94370 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.17 71.98 0.66 -1.15 16 2 C -0.03 -0.36 3.35 -11.54 -0.04 -0.40 16 3 C -0.14 -1.63 9.17 71.98 0.66 -0.97 16 4 C 0.06 1.27 5.90 88.46 0.52 1.79 16 5 N -0.49 -11.69 10.49 -190.30 -2.00 -13.68 16 6 C 0.12 3.05 11.09 84.23 0.93 3.98 16 7 C -0.31 -8.45 6.47 23.88 0.15 -8.29 16 8 C 0.62 19.21 8.03 86.45 0.69 19.90 16 9 O -0.57 -20.89 17.65 -4.32 -0.08 -20.96 16 10 N -0.64 -17.74 3.70 -864.64 -3.20 -20.93 16 11 C 0.12 3.11 6.52 83.76 0.55 3.65 16 12 C -0.10 -2.85 1.06 -52.62 -0.06 -2.90 16 13 C 0.13 3.24 8.03 83.67 0.67 3.91 16 14 C -0.10 -3.63 6.40 31.32 0.20 -3.43 16 15 C 0.19 8.92 5.39 86.81 0.47 9.39 16 16 N -0.62 -29.42 3.41 -693.43 -2.36 -31.79 16 17 C -0.23 -12.14 10.28 84.03 0.86 -11.27 16 18 H 0.09 4.32 7.83 -2.91 -0.02 4.29 16 19 C -0.07 -3.64 5.49 84.86 0.47 -3.17 16 20 N -0.95 -55.50 10.30 21.65 0.22 -55.28 16 21 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 C 0.15 5.29 6.70 86.22 0.58 5.87 16 26 S 0.20 4.43 20.17 -56.49 -1.14 3.29 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.11 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.09 0.69 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.19 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.11 2.56 8.06 -2.38 -0.02 2.54 16 36 H 0.08 2.15 6.68 -2.39 -0.02 2.13 16 37 H 0.08 2.10 8.13 -2.38 -0.02 2.08 16 38 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 40 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.01 0.71 7.38 -2.39 -0.02 0.69 16 42 H 0.00 0.27 7.49 -2.38 -0.02 0.25 16 43 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 Total: -1.00 -68.76 379.08 1.78 -66.98 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.98 Total: 9.44 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 7.32 Total: 16.91 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -7.33 Total: -121.69 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.08 Total: -20.96 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.14 Total: 3.29 kcal Total: -68.76 1.78 -66.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073501291.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.505 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds