Wall clock time and date at job start Tue Mar 31 2020 18:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47519 * 2 1 4 4 N 1.29436 * 124.80200 * 89.97283 * 3 2 1 5 5 C 1.30938 * 117.36521 * 179.97438 * 4 3 2 6 6 C 1.35669 * 114.18789 * 0.02562 * 5 4 3 7 7 C 1.46679 * 126.12801 * 179.97438 * 6 5 4 8 8 O 1.21688 * 120.00275 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00248 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00613 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.88423 * 333.16354 * 10 9 7 12 12 C 1.53949 * 113.66271 * 104.50088 * 10 9 7 13 13 C 1.53959 * 87.29253 * 89.74069 * 12 10 9 14 14 H 1.08999 * 113.65866 * 139.29879 * 13 12 10 15 15 N 1.46499 * 113.66417 * 270.26389 * 13 12 10 16 16 C 1.36939 * 119.99933 * 254.26176 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.52904 * 86.88083 * 24.78215 * 13 12 10 25 25 C 1.52917 * 121.14254 * 209.33201 * 24 13 12 26 26 C 1.53953 * 86.78182 * 209.37779 * 25 24 13 27 27 C 1.52914 * 121.14136 * 100.76754 * 24 13 12 28 28 S 1.70955 * 124.80722 * 270.29283 * 3 2 1 29 29 H 1.09000 * 109.46667 * 299.99822 * 1 2 3 30 30 H 1.08998 * 109.47023 * 59.99289 * 1 2 3 31 31 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46667 * 240.00178 * 2 1 3 33 33 H 1.08998 * 109.47023 * 120.00711 * 2 1 3 34 34 H 1.07995 * 122.90593 * 180.02562 * 5 4 3 35 35 H 0.97005 * 119.99805 * 0.02562 * 9 7 6 36 36 H 1.08998 * 113.58020 * 335.14327 * 12 10 9 37 37 H 1.08996 * 113.65411 * 204.35499 * 12 10 9 38 38 H 0.97001 * 119.99790 * 73.98149 * 15 13 12 39 39 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.65566 * 323.85560 * 25 24 13 41 41 H 1.09001 * 113.66201 * 94.90287 * 25 24 13 42 42 H 1.08993 * 113.57707 * 270.12684 * 26 25 24 43 43 H 1.09005 * 113.64458 * 139.35044 * 26 25 24 44 44 H 1.08997 * 113.66464 * 265.09738 * 27 24 13 45 45 H 1.09001 * 113.65683 * 36.15485 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2783 2.1174 1.0628 5 6 2.7117 3.3412 0.8934 6 6 2.8426 3.7097 -0.4058 7 6 3.3041 5.0142 -0.8924 8 8 3.6113 5.8853 -0.1002 9 7 3.3880 5.2481 -2.2170 10 6 3.8484 6.5512 -2.7032 11 1 3.6523 7.3597 -1.9990 12 6 5.2911 6.5358 -3.2400 13 6 4.6971 6.1916 -4.6181 14 1 5.1797 6.7126 -5.4449 15 7 4.5573 4.7527 -4.8553 16 6 5.4203 4.1115 -5.7034 17 1 6.2013 4.6675 -6.2008 18 6 5.2915 2.7471 -5.9237 19 7 4.3394 2.0697 -5.3178 20 14 6.4683 1.8726 -7.0811 21 1 7.4399 2.8515 -7.6316 22 1 7.1991 0.8150 -6.3378 23 1 5.7018 1.2562 -8.1937 24 6 3.4098 6.8623 -4.1377 25 6 2.0437 6.4193 -4.6630 26 6 1.5789 7.8674 -4.4238 27 6 3.0534 8.2868 -4.5646 28 16 2.3510 2.3431 -1.4037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9449 4.0003 1.7165 35 1 3.1427 4.5539 -2.8486 36 1 5.9047 5.7396 -2.8186 37 1 5.7805 7.5092 -3.2070 38 1 3.8558 4.2534 -4.4085 39 1 4.2491 1.1163 -5.4721 40 1 2.0519 6.1304 -5.7139 41 1 1.5456 5.6890 -4.0253 42 1 1.1710 8.0354 -3.4271 43 1 0.9373 8.2569 -5.2143 44 1 3.3619 9.0483 -3.8484 45 1 3.3453 8.5226 -5.5880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078823469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:18 Heat of formation + Delta-G solvation = 61.280173 kcal Electronic energy + Delta-G solvation = -27177.917993 eV Core-core repulsion = 23516.874437 eV Total energy + Delta-G solvation = -3661.043555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71123 -39.80408 -38.43805 -35.32901 -34.06637 -33.70553 -32.38564 -30.12213 -29.47163 -26.20849 -25.50953 -24.69128 -24.13167 -23.30191 -22.65592 -21.20852 -20.16266 -19.63064 -18.33143 -17.96912 -17.19759 -16.41659 -15.83163 -15.32778 -15.20174 -15.05867 -14.63779 -14.53627 -14.35469 -13.98874 -13.81446 -13.59027 -13.19649 -12.99990 -12.54476 -12.42868 -12.13627 -11.96932 -11.86752 -11.58838 -11.45289 -11.34118 -11.30943 -10.99844 -10.91641 -10.72368 -10.23160 -10.13719 -10.03677 -9.84328 -9.76053 -9.53612 -9.41531 -9.35162 -8.91917 -8.83466 -8.58583 -7.08652 -5.90102 -3.18329 0.35785 1.31826 1.74426 2.56018 3.26122 3.36142 3.38561 3.43465 3.44268 4.05267 4.46217 4.69040 4.81204 4.87283 4.93525 5.00941 5.04777 5.07920 5.11139 5.27899 5.36860 5.38008 5.49294 5.59106 5.65819 5.76298 5.82436 5.84778 5.90680 5.97043 5.98236 6.06303 6.09684 6.16746 6.19613 6.28280 6.36554 6.56610 6.65286 6.69736 6.88469 7.02521 7.62653 7.64669 7.76829 8.28253 8.36711 9.39836 9.93809 10.27911 11.32337 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008303 B = 0.005052 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.313892 B = 5541.364157 C = 7749.602928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.041 3.959 4 N -0.484 5.484 5 C 0.113 3.887 6 C -0.301 4.301 7 C 0.599 3.401 8 O -0.538 6.538 9 N -0.692 5.692 10 C 0.151 3.849 11 H 0.094 0.906 12 C -0.186 4.186 13 C 0.179 3.821 14 H 0.067 0.933 15 N -0.700 5.700 16 C -0.241 4.241 17 H 0.074 0.926 18 C -0.009 4.009 19 N -0.930 5.930 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.291 1.291 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.141 4.141 27 C -0.103 4.103 28 S 0.226 5.774 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.184 0.816 35 H 0.406 0.594 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.378 0.622 39 H 0.256 0.744 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 2.498 6.757 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.233 4.233 4 N -0.198 5.198 5 C -0.046 4.046 6 C -0.426 4.426 7 C 0.385 3.615 8 O -0.418 6.418 9 N -0.343 5.343 10 C 0.046 3.954 11 H 0.112 0.888 12 C -0.228 4.228 13 C 0.067 3.933 14 H 0.085 0.915 15 N -0.340 5.340 16 C -0.372 4.372 17 H 0.092 0.908 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.218 1.218 24 C -0.134 4.134 25 C -0.154 4.154 26 C -0.179 4.179 27 C -0.141 4.141 28 S 0.484 5.516 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.201 0.799 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.213 0.787 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.058 2.533 6.534 10.679 hybrid contribution 0.683 -0.535 0.042 0.869 sum -7.374 1.998 6.576 10.080 Atomic orbital electron populations 1.21780 0.93366 1.02639 1.02748 1.20282 0.96790 0.87445 1.04646 1.27560 1.01444 1.02204 0.92065 1.66212 1.16061 1.06038 1.31494 1.22073 0.95848 0.91393 0.95314 1.25876 1.17506 1.00948 0.98262 1.16680 0.77357 0.84924 0.82579 1.90785 1.50553 1.45095 1.55339 1.45646 1.66317 1.16332 1.06048 1.21527 0.95774 0.84634 0.93481 0.88845 1.24301 0.95543 1.01500 1.01456 1.21059 0.91938 0.86388 0.93919 0.91534 1.42099 1.37152 1.01580 1.53145 1.19311 1.08468 0.91098 1.18349 0.90842 1.24707 0.98859 0.96444 1.00502 1.69629 1.33989 1.07700 1.46459 0.86116 0.80190 0.79597 0.80251 1.20571 1.21893 1.21841 1.23485 0.96796 0.97673 0.95482 1.22525 0.95270 0.95751 1.01880 1.22861 0.96304 0.97427 1.01286 1.22479 0.95784 0.94339 1.01475 1.84788 1.55178 1.02979 1.08681 0.91997 0.92161 0.91286 0.89129 0.88695 0.79891 0.75588 0.90917 0.90253 0.78721 0.93460 0.89265 0.92195 0.90759 0.91826 0.91549 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.90 37.16 0.37 -0.91 16 2 C -0.05 -0.52 6.51 -27.88 -0.18 -0.70 16 3 C 0.04 0.56 6.64 -13.29 -0.09 0.48 16 4 N -0.48 -7.27 10.51 -11.50 -0.12 -7.39 16 5 C 0.11 1.75 11.09 -18.85 -0.21 1.54 16 6 C -0.30 -5.01 6.48 -37.09 -0.24 -5.25 16 7 C 0.60 10.99 7.79 -12.85 -0.10 10.89 16 8 O -0.54 -10.85 16.51 5.20 0.09 -10.77 16 9 N -0.69 -12.38 4.72 -54.53 -0.26 -12.64 16 10 C 0.15 2.56 4.09 -67.33 -0.28 2.29 16 11 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 12 C -0.19 -3.31 7.68 -25.74 -0.20 -3.51 16 13 C 0.18 3.39 4.35 -67.48 -0.29 3.10 16 14 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 15 N -0.70 -16.10 4.97 -52.99 -0.26 -16.36 16 16 C -0.24 -6.26 9.97 -15.06 -0.15 -6.41 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.93 -25.34 13.06 55.49 0.72 -24.61 16 20 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 C -0.13 -2.08 0.78 -154.55 -0.12 -2.20 16 25 C -0.12 -1.79 7.22 -26.28 -0.19 -1.98 16 26 C -0.14 -1.78 8.08 -25.75 -0.21 -1.99 16 27 C -0.10 -1.32 7.84 -26.28 -0.21 -1.52 16 28 S 0.23 3.44 22.31 -107.50 -2.40 1.04 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.18 2.58 8.06 -52.49 -0.42 2.15 16 35 H 0.41 7.58 5.09 -40.82 -0.21 7.37 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.38 8.93 5.39 -40.82 -0.22 8.71 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.06 0.94 7.52 -51.93 -0.39 0.55 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -29.37 382.42 -10.35 -39.73 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -6.67 Total: 15.44 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.19 Total: -6.51 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.08 Total: -61.00 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -2.40 Total: 1.04 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.37 -10.35 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078823469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.006 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds