Wall clock time and date at job start Tue Mar 31 2020 18:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 109.47519 * 2 1 4 4 N 1.29436 * 124.80200 * 89.97283 * 3 2 1 5 5 C 1.30938 * 117.36521 * 179.97438 * 4 3 2 6 6 C 1.35669 * 114.18789 * 0.02562 * 5 4 3 7 7 C 1.46679 * 126.12801 * 179.97438 * 6 5 4 8 8 O 1.21688 * 120.00275 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00248 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00613 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.88423 * 333.16354 * 10 9 7 12 12 C 1.53949 * 113.66271 * 104.50088 * 10 9 7 13 13 C 1.53959 * 87.29253 * 89.74069 * 12 10 9 14 14 H 1.08999 * 113.65866 * 139.29879 * 13 12 10 15 15 N 1.46499 * 113.66417 * 270.26389 * 13 12 10 16 16 C 1.36939 * 119.99933 * 254.26176 * 15 13 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 13 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 13 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.52904 * 86.88083 * 24.78215 * 13 12 10 25 25 C 1.52917 * 121.14254 * 209.33201 * 24 13 12 26 26 C 1.53953 * 86.78182 * 209.37779 * 25 24 13 27 27 C 1.52914 * 121.14136 * 100.76754 * 24 13 12 28 28 S 1.70955 * 124.80722 * 270.29283 * 3 2 1 29 29 H 1.09000 * 109.46667 * 299.99822 * 1 2 3 30 30 H 1.08998 * 109.47023 * 59.99289 * 1 2 3 31 31 H 1.08999 * 109.47280 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46667 * 240.00178 * 2 1 3 33 33 H 1.08998 * 109.47023 * 120.00711 * 2 1 3 34 34 H 1.07995 * 122.90593 * 180.02562 * 5 4 3 35 35 H 0.97005 * 119.99805 * 0.02562 * 9 7 6 36 36 H 1.08998 * 113.58020 * 335.14327 * 12 10 9 37 37 H 1.08996 * 113.65411 * 204.35499 * 12 10 9 38 38 H 0.97001 * 119.99790 * 73.98149 * 15 13 12 39 39 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.65566 * 323.85560 * 25 24 13 41 41 H 1.09001 * 113.66201 * 94.90287 * 25 24 13 42 42 H 1.08993 * 113.57707 * 270.12684 * 26 25 24 43 43 H 1.09005 * 113.64458 * 139.35044 * 26 25 24 44 44 H 1.08997 * 113.66464 * 265.09738 * 27 24 13 45 45 H 1.09001 * 113.65683 * 36.15485 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 7 2.2783 2.1174 1.0628 5 6 2.7117 3.3412 0.8934 6 6 2.8426 3.7097 -0.4058 7 6 3.3041 5.0142 -0.8924 8 8 3.6113 5.8853 -0.1002 9 7 3.3880 5.2481 -2.2170 10 6 3.8484 6.5512 -2.7032 11 1 3.6523 7.3597 -1.9990 12 6 5.2911 6.5358 -3.2400 13 6 4.6971 6.1916 -4.6181 14 1 5.1797 6.7126 -5.4449 15 7 4.5573 4.7527 -4.8553 16 6 5.4203 4.1115 -5.7034 17 1 6.2013 4.6675 -6.2008 18 6 5.2915 2.7471 -5.9237 19 7 4.3394 2.0697 -5.3178 20 14 6.4683 1.8726 -7.0811 21 1 7.4399 2.8515 -7.6316 22 1 7.1991 0.8150 -6.3378 23 1 5.7018 1.2562 -8.1937 24 6 3.4098 6.8623 -4.1377 25 6 2.0437 6.4193 -4.6630 26 6 1.5789 7.8674 -4.4238 27 6 3.0534 8.2868 -4.5646 28 16 2.3510 2.3431 -1.4037 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9449 4.0003 1.7165 35 1 3.1427 4.5539 -2.8486 36 1 5.9047 5.7396 -2.8186 37 1 5.7805 7.5092 -3.2070 38 1 3.8558 4.2534 -4.4085 39 1 4.2491 1.1163 -5.4721 40 1 2.0519 6.1304 -5.7139 41 1 1.5456 5.6890 -4.0253 42 1 1.1710 8.0354 -3.4271 43 1 0.9373 8.2569 -5.2143 44 1 3.3619 9.0483 -3.8484 45 1 3.3453 8.5226 -5.5880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078823469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:17 Heat of formation + Delta-G solvation = 44.338281 kcal Electronic energy + Delta-G solvation = -27178.652648 eV Core-core repulsion = 23516.874437 eV Total energy + Delta-G solvation = -3661.778211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07013 -41.02949 -39.79942 -36.71872 -35.40007 -34.98893 -33.95336 -31.80927 -30.78590 -27.32590 -26.82725 -26.18688 -25.39945 -24.77647 -23.75290 -22.59452 -21.46569 -20.97490 -19.63241 -19.32458 -18.89417 -17.70395 -17.18395 -16.81563 -16.52873 -16.30585 -16.13319 -15.81825 -15.54528 -15.38190 -14.98117 -14.90159 -14.75414 -14.42162 -13.93609 -13.42859 -13.25876 -13.22714 -13.16237 -12.90668 -12.75540 -12.66307 -12.57832 -12.51496 -12.11782 -12.08511 -11.98039 -11.83049 -11.45428 -11.31372 -11.10590 -10.85155 -10.77003 -10.68739 -10.59456 -10.09623 -9.92487 -8.95697 -7.91414 -5.18630 -0.85845 0.11660 0.54538 1.29845 1.48296 1.50579 1.58109 1.90121 2.03334 2.56942 2.98994 3.34986 3.40703 3.56211 3.67316 3.79961 3.84478 3.91525 4.01289 4.13539 4.20331 4.24465 4.27508 4.28531 4.53737 4.63021 4.65782 4.74035 4.83607 4.94751 4.95157 4.97970 4.99694 5.06607 5.07354 5.12384 5.17432 5.19304 5.30898 5.47395 5.54315 5.60677 5.63009 6.26733 6.32375 6.49181 6.92332 7.37884 8.09200 8.34109 9.30801 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008303 B = 0.005052 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3371.313892 B = 5541.364157 C = 7749.602928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C 0.062 3.938 4 N -0.495 5.495 5 C 0.121 3.879 6 C -0.327 4.327 7 C 0.598 3.402 8 O -0.563 6.563 9 N -0.693 5.693 10 C 0.149 3.851 11 H 0.100 0.900 12 C -0.179 4.179 13 C 0.164 3.836 14 H 0.067 0.933 15 N -0.710 5.710 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.061 4.061 19 N -0.952 5.952 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.293 1.293 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.127 4.127 27 C -0.092 4.092 28 S 0.203 5.797 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.195 0.805 35 H 0.401 0.599 36 H 0.040 0.960 37 H 0.107 0.893 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.075 0.925 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 3.020 6.795 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 C -0.212 4.212 4 N -0.210 5.210 5 C -0.038 4.038 6 C -0.452 4.452 7 C 0.384 3.616 8 O -0.444 6.444 9 N -0.343 5.343 10 C 0.044 3.956 11 H 0.118 0.882 12 C -0.221 4.221 13 C 0.053 3.947 14 H 0.085 0.915 15 N -0.349 5.349 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.254 4.254 19 N -0.602 5.602 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.226 1.226 23 H -0.220 1.220 24 C -0.125 4.125 25 C -0.162 4.162 26 C -0.164 4.164 27 C -0.130 4.130 28 S 0.462 5.538 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.212 0.788 35 H 0.239 0.761 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.206 0.794 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.692 3.102 6.560 11.323 hybrid contribution 0.882 -0.740 0.069 1.154 sum -7.810 2.362 6.629 10.513 Atomic orbital electron populations 1.21780 0.91876 1.04184 1.02306 1.20560 0.97919 0.85150 1.05914 1.28260 0.98980 1.03114 0.90832 1.66306 1.17036 1.05964 1.31686 1.22319 0.94556 0.91685 0.95248 1.25732 1.19664 1.00869 0.98885 1.16895 0.76879 0.85317 0.82462 1.90752 1.51907 1.46032 1.55734 1.45712 1.66060 1.16579 1.05924 1.21609 0.95222 0.84437 0.94334 0.88191 1.24241 0.95763 1.01768 1.00292 1.21289 0.94421 0.84586 0.94364 0.91489 1.42178 1.36608 1.03280 1.52852 1.19586 1.08492 0.91458 1.18120 0.90930 1.25346 1.00535 0.97226 1.02337 1.69743 1.35227 1.07508 1.47693 0.85233 0.78583 0.78370 0.78452 1.19778 1.22575 1.22045 1.23429 0.95319 0.99818 0.93890 1.22536 0.95337 0.97615 1.00733 1.22796 0.96615 0.94677 1.02301 1.22526 0.95479 0.92471 1.02506 1.84879 1.55874 1.03280 1.09767 0.92471 0.92583 0.88777 0.87951 0.87240 0.78847 0.76117 0.94114 0.87471 0.79381 0.93891 0.90607 0.93314 0.90179 0.89888 0.89634 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.90 71.98 0.71 -1.48 16 2 C -0.05 -1.02 6.51 29.85 0.19 -0.83 16 3 C 0.06 1.65 6.64 88.46 0.59 2.24 16 4 N -0.50 -14.55 10.51 -190.30 -2.00 -16.55 16 5 C 0.12 3.76 11.09 84.23 0.93 4.69 16 6 C -0.33 -11.10 6.48 23.88 0.15 -10.95 16 7 C 0.60 22.42 7.79 86.45 0.67 23.09 16 8 O -0.56 -22.97 16.51 -4.31 -0.07 -23.04 16 9 N -0.69 -25.32 4.72 -444.66 -2.10 -27.42 16 10 C 0.15 4.99 4.09 45.38 0.19 5.18 16 11 H 0.10 3.25 7.54 -2.39 -0.02 3.23 16 12 C -0.18 -6.32 7.68 31.24 0.24 -6.08 16 13 C 0.16 6.17 4.35 45.28 0.20 6.37 16 14 H 0.07 2.49 8.11 -2.39 -0.02 2.47 16 15 N -0.71 -33.21 4.97 -321.56 -1.60 -34.81 16 16 C -0.24 -12.84 9.97 84.03 0.84 -12.00 16 17 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 18 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 19 N -0.95 -52.81 13.06 21.65 0.28 -52.53 16 20 Si 0.96 44.23 29.55 68.60 2.03 46.26 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 C -0.12 -3.73 0.78 -52.21 -0.04 -3.77 16 25 C -0.12 -3.73 7.22 30.89 0.22 -3.51 16 26 C -0.13 -2.86 8.08 31.23 0.25 -2.61 16 27 C -0.09 -2.09 7.84 30.88 0.24 -1.85 16 28 S 0.20 6.31 22.31 -56.49 -1.26 5.05 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.19 5.43 8.06 -2.91 -0.02 5.40 16 35 H 0.40 15.53 5.09 -92.70 -0.47 15.06 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.37 18.10 5.39 -92.71 -0.50 17.61 16 39 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 40 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.05 1.55 7.52 -2.39 -0.02 1.53 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -63.40 382.42 1.19 -62.21 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: 0.04 Total: 45.14 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 5.86 Total: -4.31 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -5.42 Total: -131.30 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.07 Total: -23.04 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 6.31 SS G_CDS: -1.26 Total: 5.05 kcal Total: -63.40 1.19 -62.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078823469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.550 kcal (2) G-P(sol) polarization free energy of solvation -63.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds