Wall clock time and date at job start Tue Mar 31 2020 18:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47041 * 2 1 4 4 N 1.29429 * 124.80807 * 89.97334 * 3 2 1 5 5 C 1.30950 * 117.36261 * 179.72861 * 4 3 2 6 6 C 1.35659 * 114.19108 * 0.52344 * 5 4 3 7 7 C 1.46684 * 126.12710 * 179.78575 * 6 5 4 8 8 O 1.21680 * 120.00245 * 359.71710 * 7 6 5 9 9 N 1.34781 * 119.99547 * 179.71620 * 7 6 5 10 10 C 1.46502 * 119.99413 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.88752 * 23.66075 * 10 9 7 12 12 C 1.53950 * 113.74651 * 252.22843 * 10 9 7 13 13 C 1.53950 * 87.29389 * 220.78889 * 12 10 9 14 14 H 1.09007 * 113.65962 * 270.26243 * 13 12 10 15 15 N 1.46500 * 113.66590 * 139.21003 * 13 12 10 16 16 C 1.36940 * 120.00357 * 107.80940 * 15 13 12 17 17 H 1.07992 * 119.99892 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99694 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00356 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99620 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47169 * 90.00088 * 20 18 16 22 22 H 1.48497 * 109.47268 * 209.99944 * 20 18 16 23 23 H 1.48503 * 109.47343 * 330.00041 * 20 18 16 24 24 C 1.52910 * 86.78717 * 24.73347 * 13 12 10 25 25 C 1.52907 * 121.13351 * 100.81454 * 24 13 12 26 26 C 1.53951 * 86.77862 * 100.82528 * 25 24 13 27 27 C 1.52903 * 121.13886 * 209.38108 * 24 13 12 28 28 S 1.70957 * 124.80372 * 269.99522 * 3 2 1 29 29 H 1.09005 * 109.47106 * 60.00231 * 1 2 3 30 30 H 1.09002 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47232 * 300.00664 * 1 2 3 32 32 H 1.08990 * 109.47471 * 239.99720 * 2 1 3 33 33 H 1.09004 * 109.46646 * 119.99154 * 2 1 3 34 34 H 1.08002 * 122.89805 * 180.34741 * 5 4 3 35 35 H 0.96993 * 120.00291 * 0.02562 * 9 7 6 36 36 H 1.09001 * 113.58096 * 335.38668 * 12 10 9 37 37 H 1.09001 * 113.58052 * 106.10725 * 12 10 9 38 38 H 0.97006 * 119.99335 * 287.81608 * 15 13 12 39 39 H 0.96997 * 120.00107 * 180.02562 * 19 18 16 40 40 H 1.08995 * 113.66604 * 215.29469 * 25 24 13 41 41 H 1.08996 * 113.66613 * 346.35541 * 25 24 13 42 42 H 1.09000 * 113.58140 * 270.13184 * 26 25 24 43 43 H 1.08998 * 113.65170 * 139.34675 * 26 25 24 44 44 H 1.08999 * 113.66373 * 13.65529 * 27 24 13 45 45 H 1.09000 * 113.66011 * 144.70603 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7162 3.3399 0.8930 6 6 2.8411 3.7103 -0.4060 7 6 3.3021 5.0150 -0.8927 8 8 3.6099 5.8858 -0.1006 9 7 3.3846 5.2492 -2.2175 10 6 3.8445 6.5524 -2.7036 11 1 4.4592 7.0832 -1.9767 12 6 2.7262 7.4159 -3.3150 13 6 3.7338 7.8180 -4.4072 14 1 4.3174 8.7047 -4.1590 15 7 3.1531 7.8742 -5.7510 16 6 2.9421 9.0846 -6.3558 17 1 3.2033 9.9978 -5.8419 18 6 2.3914 9.1377 -7.6289 19 7 2.0716 8.0248 -8.2546 20 14 2.1028 10.7888 -8.4535 21 1 3.3096 11.1723 -9.2293 22 1 0.9375 10.6883 -9.3684 23 1 1.8321 11.8186 -7.4183 24 6 4.4551 6.5041 -4.1047 25 6 4.2771 5.2796 -5.0030 26 6 5.6363 5.6468 -5.6258 27 6 5.9647 6.3666 -4.3051 28 16 2.3577 2.3407 -1.4037 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.9545 3.9972 1.7162 35 1 3.1389 4.5552 -2.8489 36 1 1.8837 6.8357 -3.6913 37 1 2.4177 8.2449 -2.6780 38 1 2.9181 7.0539 -6.2124 39 1 1.6872 8.0619 -9.1443 40 1 4.2856 4.3342 -4.4606 41 1 3.4408 5.3638 -5.6969 42 1 5.5570 6.3187 -6.4804 43 1 6.2740 4.7852 -5.8230 44 1 6.4765 7.3192 -4.4415 45 1 6.4475 5.7267 -3.5665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078823470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:22 Heat of formation + Delta-G solvation = 57.857476 kcal Electronic energy + Delta-G solvation = -26297.725368 eV Core-core repulsion = 22636.533393 eV Total energy + Delta-G solvation = -3661.191975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73477 -40.13142 -38.72981 -34.92425 -34.40676 -34.18733 -32.57515 -30.38182 -29.61718 -26.51014 -25.54114 -24.72954 -24.18912 -23.38982 -22.64074 -21.15623 -20.53288 -19.77722 -18.63385 -17.97651 -17.31200 -16.67710 -16.22829 -15.59841 -15.35831 -15.05240 -14.90688 -14.64226 -14.58471 -14.26206 -14.10403 -13.76547 -13.06788 -12.84144 -12.76376 -12.52618 -12.18839 -12.11712 -11.90525 -11.86341 -11.62804 -11.54982 -11.26664 -10.94818 -10.82813 -10.75824 -10.31675 -10.22182 -10.07810 -10.01840 -9.95115 -9.79304 -9.71196 -9.48728 -9.23047 -8.89153 -8.73582 -7.01429 -5.83539 -3.11987 -0.03207 0.85658 1.27857 2.22167 3.06756 3.09149 3.40195 3.46366 3.47328 3.68812 4.45872 4.54026 4.64388 4.72320 4.74144 4.77529 4.89108 5.00333 5.03875 5.16248 5.19676 5.22597 5.35852 5.40275 5.46869 5.64460 5.70820 5.81233 5.83515 5.86391 5.93802 5.96161 6.03578 6.15761 6.30202 6.34786 6.47625 6.49401 6.55741 6.81790 6.87699 7.00917 7.28611 7.47986 7.66445 8.08648 8.35256 9.47123 10.03024 10.38109 11.38726 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002623 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.239952 B =10671.731544 C =11040.738311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.051 4.051 3 C 0.059 3.941 4 N -0.478 5.478 5 C 0.117 3.883 6 C -0.289 4.289 7 C 0.594 3.406 8 O -0.529 6.529 9 N -0.703 5.703 10 C 0.130 3.870 11 H 0.114 0.886 12 C -0.174 4.174 13 C 0.194 3.806 14 H 0.083 0.917 15 N -0.705 5.705 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.126 4.126 28 S 0.167 5.833 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.188 0.812 35 H 0.397 0.603 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -17.215 14.163 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.216 4.216 4 N -0.192 5.192 5 C -0.040 4.040 6 C -0.413 4.413 7 C 0.378 3.622 8 O -0.408 6.408 9 N -0.353 5.353 10 C 0.025 3.975 11 H 0.132 0.868 12 C -0.217 4.217 13 C 0.081 3.919 14 H 0.101 0.899 15 N -0.344 5.344 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.123 4.123 25 C -0.156 4.156 26 C -0.166 4.166 27 C -0.163 4.163 28 S 0.424 5.576 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.205 0.795 35 H 0.232 0.768 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.672 -16.847 14.010 21.975 hybrid contribution -0.258 0.831 -0.166 0.886 sum 1.413 -16.016 13.844 21.218 Atomic orbital electron populations 1.21796 0.93057 1.02893 1.02981 1.20320 0.97062 0.87114 1.04675 1.27542 1.00977 1.01979 0.91105 1.66219 1.15560 1.06217 1.31188 1.22186 0.95034 0.91238 0.95566 1.25883 1.16973 1.00566 0.97858 1.16742 0.77743 0.84725 0.82979 1.90828 1.49800 1.44906 1.55236 1.45913 1.66688 1.16996 1.05661 1.22405 0.97792 0.82756 0.94524 0.86845 1.24300 0.98499 0.99081 0.99776 1.21041 0.91776 0.92838 0.86265 0.89907 1.42345 1.72665 1.06558 1.12797 1.19299 1.34575 0.85845 0.97723 0.91029 1.24736 1.01679 0.96928 0.97347 1.69647 1.48756 1.25276 1.14315 0.86199 0.77384 0.83371 0.79291 1.21695 1.21800 1.20718 1.23642 0.95884 0.99160 0.93596 1.22437 0.99355 0.95479 0.98312 1.22721 0.96169 0.99981 0.97757 1.22705 0.95412 1.00676 0.97543 1.83993 1.58020 1.04191 1.11432 0.92118 0.91075 0.91791 0.89249 0.88403 0.79482 0.76780 0.90156 0.91892 0.77761 0.93451 0.91333 0.90172 0.89034 0.92478 0.91353 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.89 37.16 0.37 -0.44 16 2 C -0.05 -0.30 6.51 -27.88 -0.18 -0.48 16 3 C 0.06 0.54 6.64 -13.29 -0.09 0.45 16 4 N -0.48 -5.38 10.51 -11.50 -0.12 -5.50 16 5 C 0.12 1.39 11.09 -18.85 -0.21 1.18 16 6 C -0.29 -3.52 6.48 -37.10 -0.24 -3.76 16 7 C 0.59 8.64 7.79 -12.85 -0.10 8.54 16 8 O -0.53 -9.29 16.46 5.21 0.09 -9.20 16 9 N -0.70 -9.61 5.25 -54.67 -0.29 -9.89 16 10 C 0.13 1.97 4.12 -67.48 -0.28 1.69 16 11 H 0.11 1.80 7.46 -51.93 -0.39 1.41 16 12 C -0.17 -3.03 7.69 -25.75 -0.20 -3.23 16 13 C 0.19 3.67 4.36 -67.48 -0.29 3.38 16 14 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 15 N -0.71 -16.57 5.32 -52.99 -0.28 -16.85 16 16 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 17 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 20 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.12 -1.87 1.06 -154.71 -0.16 -2.03 16 25 C -0.12 -1.75 6.78 -26.28 -0.18 -1.93 16 26 C -0.13 -1.92 8.08 -25.75 -0.21 -2.13 16 27 C -0.13 -1.80 7.84 -26.29 -0.21 -2.01 16 28 S 0.17 1.54 22.31 -107.50 -2.40 -0.85 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.40 4.82 6.22 -40.82 -0.25 4.56 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.39 9.54 5.92 -40.82 -0.24 9.30 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.07 0.85 7.03 -51.93 -0.36 0.49 16 41 H 0.08 1.37 6.42 -51.93 -0.33 1.04 16 42 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -30.94 382.50 -10.38 -41.32 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.62 Total: 12.47 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.22 Total: -7.78 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.03 Total: -58.59 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.40 Total: -0.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.94 -10.38 -41.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078823470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.178 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds