Wall clock time and date at job start Tue Mar 31 2020 18:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47041 * 2 1 4 4 N 1.29429 * 124.80807 * 89.97334 * 3 2 1 5 5 C 1.30950 * 117.36261 * 179.72861 * 4 3 2 6 6 C 1.35659 * 114.19108 * 0.52344 * 5 4 3 7 7 C 1.46684 * 126.12710 * 179.78575 * 6 5 4 8 8 O 1.21680 * 120.00245 * 359.71710 * 7 6 5 9 9 N 1.34781 * 119.99547 * 179.71620 * 7 6 5 10 10 C 1.46502 * 119.99413 * 179.97438 * 9 7 6 11 11 H 1.08993 * 112.88752 * 23.66075 * 10 9 7 12 12 C 1.53950 * 113.74651 * 252.22843 * 10 9 7 13 13 C 1.53950 * 87.29389 * 220.78889 * 12 10 9 14 14 H 1.09007 * 113.65962 * 270.26243 * 13 12 10 15 15 N 1.46500 * 113.66590 * 139.21003 * 13 12 10 16 16 C 1.36940 * 120.00357 * 107.80940 * 15 13 12 17 17 H 1.07992 * 119.99892 * 359.97438 * 16 15 13 18 18 C 1.38811 * 119.99694 * 180.02562 * 16 15 13 19 19 N 1.31617 * 120.00356 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99620 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47169 * 90.00088 * 20 18 16 22 22 H 1.48497 * 109.47268 * 209.99944 * 20 18 16 23 23 H 1.48503 * 109.47343 * 330.00041 * 20 18 16 24 24 C 1.52910 * 86.78717 * 24.73347 * 13 12 10 25 25 C 1.52907 * 121.13351 * 100.81454 * 24 13 12 26 26 C 1.53951 * 86.77862 * 100.82528 * 25 24 13 27 27 C 1.52903 * 121.13886 * 209.38108 * 24 13 12 28 28 S 1.70957 * 124.80372 * 269.99522 * 3 2 1 29 29 H 1.09005 * 109.47106 * 60.00231 * 1 2 3 30 30 H 1.09002 * 109.46998 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47232 * 300.00664 * 1 2 3 32 32 H 1.08990 * 109.47471 * 239.99720 * 2 1 3 33 33 H 1.09004 * 109.46646 * 119.99154 * 2 1 3 34 34 H 1.08002 * 122.89805 * 180.34741 * 5 4 3 35 35 H 0.96993 * 120.00291 * 0.02562 * 9 7 6 36 36 H 1.09001 * 113.58096 * 335.38668 * 12 10 9 37 37 H 1.09001 * 113.58052 * 106.10725 * 12 10 9 38 38 H 0.97006 * 119.99335 * 287.81608 * 15 13 12 39 39 H 0.96997 * 120.00107 * 180.02562 * 19 18 16 40 40 H 1.08995 * 113.66604 * 215.29469 * 25 24 13 41 41 H 1.08996 * 113.66613 * 346.35541 * 25 24 13 42 42 H 1.09000 * 113.58140 * 270.13184 * 26 25 24 43 43 H 1.08998 * 113.65170 * 139.34675 * 26 25 24 44 44 H 1.08999 * 113.66373 * 13.65529 * 27 24 13 45 45 H 1.09000 * 113.66011 * 144.70603 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7162 3.3399 0.8930 6 6 2.8411 3.7103 -0.4060 7 6 3.3021 5.0150 -0.8927 8 8 3.6099 5.8858 -0.1006 9 7 3.3846 5.2492 -2.2175 10 6 3.8445 6.5524 -2.7036 11 1 4.4592 7.0832 -1.9767 12 6 2.7262 7.4159 -3.3150 13 6 3.7338 7.8180 -4.4072 14 1 4.3174 8.7047 -4.1590 15 7 3.1531 7.8742 -5.7510 16 6 2.9421 9.0846 -6.3558 17 1 3.2033 9.9978 -5.8419 18 6 2.3914 9.1377 -7.6289 19 7 2.0716 8.0248 -8.2546 20 14 2.1028 10.7888 -8.4535 21 1 3.3096 11.1723 -9.2293 22 1 0.9375 10.6883 -9.3684 23 1 1.8321 11.8186 -7.4183 24 6 4.4551 6.5041 -4.1047 25 6 4.2771 5.2796 -5.0030 26 6 5.6363 5.6468 -5.6258 27 6 5.9647 6.3666 -4.3051 28 16 2.3577 2.3407 -1.4037 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.9545 3.9972 1.7162 35 1 3.1389 4.5552 -2.8489 36 1 1.8837 6.8357 -3.6913 37 1 2.4177 8.2449 -2.6780 38 1 2.9181 7.0539 -6.2124 39 1 1.6872 8.0619 -9.1443 40 1 4.2856 4.3342 -4.4606 41 1 3.4408 5.3638 -5.6969 42 1 5.5570 6.3187 -6.4804 43 1 6.2740 4.7852 -5.8230 44 1 6.4765 7.3192 -4.4415 45 1 6.4475 5.7267 -3.5665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078823470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:21 Heat of formation + Delta-G solvation = 38.672528 kcal Electronic energy + Delta-G solvation = -26298.557290 eV Core-core repulsion = 22636.533393 eV Total energy + Delta-G solvation = -3662.023896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99716 -41.06421 -39.86504 -36.29780 -35.80522 -34.98707 -34.12153 -31.94160 -30.77275 -27.33835 -26.81783 -26.29293 -25.54846 -24.48185 -23.61971 -22.40045 -21.85015 -20.77109 -19.63627 -19.46036 -18.72471 -17.89654 -17.44955 -16.66207 -16.57550 -16.29978 -16.17816 -15.88832 -15.53018 -15.47266 -14.97957 -14.81436 -14.56751 -14.37335 -13.89991 -13.53764 -13.26161 -13.20777 -13.12243 -12.90894 -12.74270 -12.72526 -12.58536 -12.32780 -12.27789 -12.07021 -12.05390 -11.87168 -11.46140 -11.37483 -11.10619 -11.01755 -10.78201 -10.73927 -10.62149 -10.07968 -9.91424 -8.95624 -7.93762 -5.20615 -0.86932 0.07465 0.47573 1.31678 1.48275 1.48355 1.56706 1.95716 2.03810 2.57090 3.00478 3.36894 3.45148 3.58063 3.65299 3.75610 3.85266 3.90763 3.99977 4.10358 4.14676 4.25230 4.27748 4.28962 4.52168 4.62760 4.67213 4.72338 4.74309 4.83676 4.95737 4.99519 4.99781 5.07282 5.08123 5.12248 5.18883 5.23415 5.33290 5.46404 5.51524 5.60857 5.65715 6.28479 6.31980 6.52186 6.96959 7.36445 8.11564 8.36582 9.29137 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017161 B = 0.002623 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.239952 B =10671.731544 C =11040.738311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C 0.066 3.934 4 N -0.501 5.501 5 C 0.119 3.881 6 C -0.320 4.320 7 C 0.596 3.404 8 O -0.565 6.565 9 N -0.696 5.696 10 C 0.148 3.852 11 H 0.112 0.888 12 C -0.170 4.170 13 C 0.177 3.823 14 H 0.079 0.921 15 N -0.715 5.715 16 C -0.241 4.241 17 H 0.074 0.926 18 C -0.070 4.070 19 N -0.965 5.965 20 Si 0.966 3.034 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.273 1.273 24 C -0.112 4.112 25 C -0.113 4.113 26 C -0.128 4.128 27 C -0.116 4.116 28 S 0.211 5.789 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.187 0.813 35 H 0.406 0.594 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.379 0.621 39 H 0.251 0.749 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -19.234 14.924 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 C -0.208 4.208 4 N -0.215 5.215 5 C -0.039 4.039 6 C -0.444 4.444 7 C 0.383 3.617 8 O -0.446 6.446 9 N -0.345 5.345 10 C 0.042 3.958 11 H 0.130 0.870 12 C -0.212 4.212 13 C 0.066 3.934 14 H 0.097 0.903 15 N -0.353 5.353 16 C -0.373 4.373 17 H 0.091 0.909 18 C -0.263 4.263 19 N -0.616 5.616 20 Si 0.796 3.204 21 H -0.215 1.215 22 H -0.224 1.224 23 H -0.198 1.198 24 C -0.115 4.115 25 C -0.150 4.150 26 C -0.165 4.165 27 C -0.153 4.153 28 S 0.468 5.532 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.204 0.796 35 H 0.243 0.757 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.214 0.786 39 H 0.059 0.941 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.125 -18.882 14.796 24.082 hybrid contribution -0.422 1.365 -0.316 1.464 sum 1.703 -17.516 14.480 22.790 Atomic orbital electron populations 1.21804 0.92542 1.04063 1.02193 1.20572 0.97327 0.85168 1.06331 1.28232 0.98852 1.02974 0.90751 1.66295 1.16884 1.06181 1.32144 1.22289 0.94376 0.91600 0.95644 1.25650 1.19170 1.00825 0.98790 1.16983 0.76870 0.85225 0.82637 1.90804 1.51422 1.46386 1.56010 1.45753 1.66507 1.16495 1.05788 1.22070 0.96277 0.83170 0.94246 0.86996 1.24143 0.98445 0.99428 0.99203 1.21284 0.92791 0.94796 0.84535 0.90325 1.42429 1.73272 1.05283 1.14339 1.19648 1.32909 0.87057 0.97726 0.90855 1.25441 1.02707 0.99838 0.98277 1.69785 1.50430 1.26980 1.14382 0.85243 0.76818 0.80080 0.78234 1.21519 1.22380 1.19830 1.23411 0.97020 0.97556 0.93470 1.22473 0.98368 0.96440 0.97759 1.22628 0.96754 1.00336 0.96811 1.22706 0.94105 1.00913 0.97605 1.83784 1.56983 1.02180 1.10212 0.92294 0.88986 0.93194 0.86747 0.87588 0.79601 0.75724 0.91174 0.92274 0.78648 0.94063 0.88067 0.92725 0.92465 0.89865 0.91828 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 71.98 0.71 -0.50 16 2 C -0.05 -0.47 6.51 29.85 0.19 -0.27 16 3 C 0.07 1.06 6.64 88.46 0.59 1.65 16 4 N -0.50 -10.56 10.51 -190.29 -2.00 -12.56 16 5 C 0.12 2.74 11.09 84.23 0.93 3.67 16 6 C -0.32 -7.42 6.48 23.88 0.15 -7.26 16 7 C 0.60 16.82 7.79 86.45 0.67 17.49 16 8 O -0.57 -19.72 16.46 -4.28 -0.07 -19.79 16 9 N -0.70 -18.01 5.25 -445.11 -2.34 -20.35 16 10 C 0.15 4.35 4.12 45.28 0.19 4.54 16 11 H 0.11 3.43 7.46 -2.39 -0.02 3.42 16 12 C -0.17 -5.94 7.69 31.23 0.24 -5.70 16 13 C 0.18 6.76 4.36 45.28 0.20 6.95 16 14 H 0.08 3.04 8.10 -2.38 -0.02 3.02 16 15 N -0.71 -34.32 5.32 -321.56 -1.71 -36.03 16 16 C -0.24 -13.05 9.97 84.03 0.84 -12.21 16 17 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 18 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 19 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 20 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C -0.11 -3.38 1.06 -52.31 -0.06 -3.43 16 25 C -0.11 -3.18 6.78 30.88 0.21 -2.97 16 26 C -0.13 -3.63 8.08 31.23 0.25 -3.38 16 27 C -0.12 -3.09 7.84 30.88 0.24 -2.85 16 28 S 0.21 3.38 22.31 -56.49 -1.26 2.12 16 29 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.41 9.00 6.22 -92.71 -0.58 8.42 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.38 19.25 5.92 -92.70 -0.55 18.70 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.10 2.19 7.03 -2.39 -0.02 2.18 16 41 H 0.05 1.86 6.42 -2.39 -0.02 1.85 16 42 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.83 382.50 0.66 -67.17 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.10 Total: 36.58 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 5.83 Total: -7.75 kcal Atomic # 7 Polarization: -120.22 SS G_CDS: -5.77 Total: -125.99 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.07 Total: -19.79 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -1.26 Total: 2.12 kcal Total: -67.83 0.66 -67.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078823470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.847 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds