Wall clock time and date at job start Tue Mar 31 2020 18:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46692 * 120.00018 * 2 1 3 5 5 N 1.28645 * 124.71646 * 120.28632 * 4 2 1 6 6 C 1.33565 * 115.76553 * 180.15054 * 5 4 2 7 7 C 1.47266 * 123.14401 * 179.82473 * 6 5 4 8 8 O 1.21632 * 119.99749 * 179.73058 * 7 6 5 9 9 N 1.34778 * 119.99878 * 359.73457 * 7 6 5 10 10 C 1.49837 * 135.06796 * 0.09533 * 9 7 6 11 11 C 1.54654 * 85.09775 * 153.73646 * 10 9 7 12 12 H 1.09005 * 114.43226 * 140.13211 * 11 10 9 13 13 C 1.53006 * 110.84053 * 269.94607 * 11 10 9 14 14 C 1.53096 * 109.44761 * 143.89674 * 13 11 10 15 15 N 1.46617 * 108.00847 * 301.01711 * 14 13 11 16 16 C 1.36932 * 119.89313 * 237.30767 * 15 14 13 17 17 H 1.08002 * 119.99954 * 24.93372 * 16 15 14 18 18 C 1.38820 * 120.00199 * 204.93269 * 16 15 14 19 19 N 1.31621 * 119.99417 * 14.67183 * 18 16 15 20 20 Si 1.86796 * 120.00198 * 194.66841 * 18 16 15 21 21 H 1.48496 * 109.46957 * 90.00141 * 20 18 16 22 22 H 1.48499 * 109.47002 * 210.00034 * 20 18 16 23 23 H 1.48501 * 109.46902 * 330.00291 * 20 18 16 24 24 C 1.44671 * 119.86521 * 58.21268 * 15 14 13 25 25 C 1.46819 * 135.01254 * 179.97438 * 9 7 6 26 26 H 1.08997 * 111.55785 * 94.52214 * 25 9 7 27 27 C 1.35210 * 113.71313 * 359.56012 * 6 5 4 28 28 S 1.70765 * 124.72120 * 299.97097 * 4 2 1 29 29 H 1.08996 * 109.46749 * 59.99756 * 1 2 3 30 30 H 1.08996 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.00382 * 1 2 3 32 32 H 1.08998 * 109.47113 * 239.99618 * 2 1 3 33 33 H 1.08997 * 109.47332 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47217 * 300.00089 * 3 2 1 35 35 H 1.09006 * 109.46948 * 59.99666 * 3 2 1 36 36 H 1.09000 * 114.35780 * 39.77559 * 10 9 7 37 37 H 1.08997 * 113.84178 * 267.64904 * 10 9 7 38 38 H 1.09001 * 109.47673 * 23.89718 * 13 11 10 39 39 H 1.09007 * 109.47836 * 263.89171 * 13 11 10 40 40 H 1.08998 * 109.75916 * 60.64700 * 14 13 11 41 41 H 1.09005 * 109.75235 * 181.39195 * 14 13 11 42 42 H 0.97004 * 119.99849 * 180.02562 * 19 18 16 43 43 H 1.09007 * 108.46404 * 198.90605 * 24 15 14 44 44 H 1.09005 * 108.82125 * 80.97715 * 24 15 14 45 45 H 1.08002 * 125.58201 * 180.23188 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7793 -1.7577 1.2183 6 6 3.1176 -2.2436 2.4155 7 6 3.9627 -3.4369 2.5907 8 8 4.2396 -3.8270 3.7090 9 7 4.4293 -4.0964 1.5119 10 6 4.3082 -3.9234 0.0285 11 6 5.6651 -4.6628 -0.0350 12 1 5.7510 -5.3780 -0.8531 13 6 6.8288 -3.6715 0.0313 14 6 7.9791 -4.2885 0.8312 15 7 7.4797 -4.6048 2.1729 16 6 8.0939 -4.0695 3.2735 17 1 8.6465 -3.1455 3.1875 18 6 8.0063 -4.7143 4.4997 19 7 7.5931 -5.9626 4.5587 20 14 8.4751 -3.8106 6.0659 21 1 7.2787 -3.1274 6.6200 22 1 8.9956 -4.7822 7.0610 23 1 9.5235 -2.8040 5.7615 24 6 6.3518 -5.4971 2.3300 25 6 5.2695 -5.2822 1.3030 26 1 4.6676 -6.1807 1.1675 27 6 2.6163 -1.5342 3.4517 28 16 1.6953 -0.2328 2.8350 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.3549 -2.8879 -0.3086 37 1 3.4823 -4.4802 -0.4140 38 1 6.4978 -2.7546 0.5189 39 1 7.1698 -3.4432 -0.9786 40 1 8.3213 -5.2000 0.3412 41 1 8.8016 -3.5768 0.9026 42 1 7.5315 -6.4132 5.4155 43 1 5.9273 -5.3455 3.3226 44 1 6.7044 -6.5259 2.2568 45 1 2.7722 -1.7539 4.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084723856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:32 Heat of formation + Delta-G solvation = 69.612162 kcal Electronic energy + Delta-G solvation = -27798.170070 eV Core-core repulsion = 24137.487817 eV Total energy + Delta-G solvation = -3660.682253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51589 -39.54666 -37.35799 -35.64583 -35.10640 -32.05481 -30.12132 -30.06706 -29.00421 -27.54447 -26.87509 -25.52294 -23.78281 -23.39353 -22.13461 -20.96972 -20.53617 -19.38468 -18.38736 -17.51257 -16.41527 -16.08527 -15.68561 -15.59340 -15.12163 -14.91056 -14.53259 -14.10312 -13.71032 -13.47507 -13.47271 -13.17185 -13.09174 -12.92217 -12.63027 -12.45594 -12.20828 -12.02922 -11.92668 -11.78384 -11.55457 -11.40339 -11.27084 -11.00887 -10.63563 -10.59825 -10.36269 -10.11463 -9.93990 -9.78183 -9.73083 -9.63375 -9.55152 -8.94997 -8.83572 -8.25040 -7.97419 -6.55023 -5.60580 -3.02192 0.59170 1.22479 1.63009 2.21911 3.38044 3.50478 3.56343 3.58367 3.80842 3.87708 4.51940 4.64669 4.70355 4.74355 4.87640 5.03567 5.23037 5.23502 5.35051 5.36409 5.43264 5.49596 5.54035 5.59263 5.61372 5.64600 5.80089 5.82963 5.85326 5.87279 5.93044 6.08143 6.21891 6.33198 6.44253 6.49947 6.61490 6.68139 6.86433 7.08186 7.49597 7.58752 7.83656 8.00200 8.35109 8.63271 8.81480 9.42035 10.05870 10.53685 11.47212 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.004132 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.226532 B = 6774.986278 C = 7807.379304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.017 4.017 3 C -0.148 4.148 4 C 0.026 3.974 5 N -0.435 5.435 6 C 0.028 3.972 7 C 0.607 3.393 8 O -0.514 6.514 9 N -0.614 5.614 10 C 0.113 3.887 11 C -0.114 4.114 12 H 0.085 0.915 13 C -0.115 4.115 14 C 0.145 3.855 15 N -0.582 5.582 16 C -0.253 4.253 17 H 0.063 0.937 18 C 0.011 3.989 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.164 3.836 25 C 0.126 3.874 26 H 0.073 0.927 27 C -0.229 4.229 28 S 0.188 5.812 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.108 0.892 44 H 0.028 0.972 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.451 12.121 -12.492 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.039 4.039 3 C -0.206 4.206 4 C -0.254 4.254 5 N -0.150 5.150 6 C -0.106 4.106 7 C 0.392 3.608 8 O -0.389 6.389 9 N -0.350 5.350 10 C -0.010 4.010 11 C -0.133 4.133 12 H 0.103 0.897 13 C -0.155 4.155 14 C 0.019 3.981 15 N -0.305 5.305 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.188 4.188 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.038 3.962 25 C 0.022 3.978 26 H 0.091 0.909 27 C -0.371 4.371 28 S 0.444 5.556 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.126 0.874 44 H 0.046 0.954 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.757 12.443 -11.583 23.179 hybrid contribution 0.632 -0.448 1.051 1.305 sum -15.125 11.995 -10.532 21.990 Atomic orbital electron populations 1.21929 0.93271 1.02725 1.02618 1.19788 0.95946 0.95365 0.92822 1.21939 1.02041 0.94070 1.02597 1.27180 1.01208 0.97506 0.99468 1.67024 1.11704 1.09953 1.26305 1.20675 1.03054 0.99994 0.86900 1.16547 0.78938 0.81537 0.83751 1.90897 1.57732 1.67128 1.23190 1.50060 1.49924 1.29665 1.05302 1.23843 0.96377 1.01269 0.79493 1.22864 0.94935 0.98217 0.97333 0.89719 1.21834 0.96416 0.97936 0.99279 1.20767 0.93502 0.96899 0.86958 1.43239 1.31222 1.55468 1.00528 1.19101 1.29151 1.02731 0.87209 0.91914 1.24914 1.00415 0.95062 0.98380 1.70010 1.51388 1.09356 1.24015 0.86317 0.77921 0.78879 0.83789 1.21406 1.21838 1.20705 1.19957 0.85412 0.92789 0.98066 1.22758 0.92347 0.87309 0.95340 0.90913 1.26592 1.04205 1.00178 1.06126 1.82569 1.46062 1.26422 1.00516 0.91189 0.91973 0.92231 0.88052 0.91833 0.91183 0.92225 0.89591 0.90799 0.92153 0.92820 0.96215 0.92665 0.93817 0.87449 0.95392 0.79501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.09 37.16 0.34 -0.62 16 2 C -0.02 -0.14 3.34 -91.77 -0.31 -0.45 16 3 C -0.15 -1.03 9.09 37.16 0.34 -0.69 16 4 C 0.03 0.31 6.00 -13.61 -0.08 0.23 16 5 N -0.43 -6.68 8.71 -8.51 -0.07 -6.75 16 6 C 0.03 0.51 6.69 -84.52 -0.57 -0.06 16 7 C 0.61 13.41 7.95 -12.59 -0.10 13.31 16 8 O -0.51 -13.57 15.77 5.25 0.08 -13.49 16 9 N -0.61 -12.36 3.39 -172.64 -0.59 -12.95 16 10 C 0.11 1.75 7.25 -1.42 -0.01 1.74 16 11 C -0.11 -1.89 4.34 -89.98 -0.39 -2.28 16 12 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.12 -2.06 5.66 -26.68 -0.15 -2.21 16 14 C 0.15 3.13 6.45 -3.93 -0.03 3.11 16 15 N -0.58 -15.43 2.99 -175.88 -0.53 -15.95 16 16 C -0.25 -7.43 9.55 -15.06 -0.14 -7.57 16 17 H 0.06 1.82 7.84 -52.49 -0.41 1.41 16 18 C 0.01 0.33 4.96 -17.43 -0.09 0.24 16 19 N -0.90 -28.00 10.91 55.49 0.61 -27.40 16 20 Si 0.90 23.76 29.58 -169.99 -5.03 18.73 16 21 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 24 C 0.16 4.25 4.55 -6.15 -0.03 4.22 16 25 C 0.13 2.58 4.27 -69.18 -0.30 2.28 16 26 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 27 C -0.23 -3.57 10.62 29.65 0.31 -3.25 16 28 S 0.19 2.07 22.22 -107.50 -2.39 -0.32 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.09 1.30 7.20 -51.93 -0.37 0.93 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 1.21 7.70 -51.93 -0.40 0.81 16 39 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 1.17 7.88 -51.93 -0.41 0.76 16 42 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.11 3.25 4.71 -51.93 -0.24 3.00 16 44 H 0.03 0.78 7.99 -51.93 -0.41 0.36 16 45 H 0.19 2.89 8.03 -52.49 -0.42 2.47 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -35.57 371.62 -10.37 -45.94 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.86 Total: -1.40 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: -1.19 Total: 7.99 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.58 Total: -63.05 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.03 Total: 18.73 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.39 Total: -0.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.57 -10.37 -45.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084723856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.550 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds