Wall clock time and date at job start Tue Mar 31 2020 18:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47409 * 2 1 4 4 C 1.50702 * 109.46692 * 120.00018 * 2 1 3 5 5 N 1.28645 * 124.71646 * 120.28632 * 4 2 1 6 6 C 1.33565 * 115.76553 * 180.15054 * 5 4 2 7 7 C 1.47266 * 123.14401 * 179.82473 * 6 5 4 8 8 O 1.21632 * 119.99749 * 179.73058 * 7 6 5 9 9 N 1.34778 * 119.99878 * 359.73457 * 7 6 5 10 10 C 1.49837 * 135.06796 * 0.09533 * 9 7 6 11 11 C 1.54654 * 85.09775 * 153.73646 * 10 9 7 12 12 H 1.09005 * 114.43226 * 140.13211 * 11 10 9 13 13 C 1.53006 * 110.84053 * 269.94607 * 11 10 9 14 14 C 1.53096 * 109.44761 * 143.89674 * 13 11 10 15 15 N 1.46617 * 108.00847 * 301.01711 * 14 13 11 16 16 C 1.36932 * 119.89313 * 237.30767 * 15 14 13 17 17 H 1.08002 * 119.99954 * 24.93372 * 16 15 14 18 18 C 1.38820 * 120.00199 * 204.93269 * 16 15 14 19 19 N 1.31621 * 119.99417 * 14.67183 * 18 16 15 20 20 Si 1.86796 * 120.00198 * 194.66841 * 18 16 15 21 21 H 1.48496 * 109.46957 * 90.00141 * 20 18 16 22 22 H 1.48499 * 109.47002 * 210.00034 * 20 18 16 23 23 H 1.48501 * 109.46902 * 330.00291 * 20 18 16 24 24 C 1.44671 * 119.86521 * 58.21268 * 15 14 13 25 25 C 1.46819 * 135.01254 * 179.97438 * 9 7 6 26 26 H 1.08997 * 111.55785 * 94.52214 * 25 9 7 27 27 C 1.35210 * 113.71313 * 359.56012 * 6 5 4 28 28 S 1.70765 * 124.72120 * 299.97097 * 4 2 1 29 29 H 1.08996 * 109.46749 * 59.99756 * 1 2 3 30 30 H 1.08996 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.00382 * 1 2 3 32 32 H 1.08998 * 109.47113 * 239.99618 * 2 1 3 33 33 H 1.08997 * 109.47332 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47217 * 300.00089 * 3 2 1 35 35 H 1.09006 * 109.46948 * 59.99666 * 3 2 1 36 36 H 1.09000 * 114.35780 * 39.77559 * 10 9 7 37 37 H 1.08997 * 113.84178 * 267.64904 * 10 9 7 38 38 H 1.09001 * 109.47673 * 23.89718 * 13 11 10 39 39 H 1.09007 * 109.47836 * 263.89171 * 13 11 10 40 40 H 1.08998 * 109.75916 * 60.64700 * 14 13 11 41 41 H 1.09005 * 109.75235 * 181.39195 * 14 13 11 42 42 H 0.97004 * 119.99849 * 180.02562 * 19 18 16 43 43 H 1.09007 * 108.46404 * 198.90605 * 24 15 14 44 44 H 1.09005 * 108.82125 * 80.97715 * 24 15 14 45 45 H 1.08002 * 125.58201 * 180.23188 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7793 -1.7577 1.2183 6 6 3.1176 -2.2436 2.4155 7 6 3.9627 -3.4369 2.5907 8 8 4.2396 -3.8270 3.7090 9 7 4.4293 -4.0964 1.5119 10 6 4.3082 -3.9234 0.0285 11 6 5.6651 -4.6628 -0.0350 12 1 5.7510 -5.3780 -0.8531 13 6 6.8288 -3.6715 0.0313 14 6 7.9791 -4.2885 0.8312 15 7 7.4797 -4.6048 2.1729 16 6 8.0939 -4.0695 3.2735 17 1 8.6465 -3.1455 3.1875 18 6 8.0063 -4.7143 4.4997 19 7 7.5931 -5.9626 4.5587 20 14 8.4751 -3.8106 6.0659 21 1 7.2787 -3.1274 6.6200 22 1 8.9956 -4.7822 7.0610 23 1 9.5235 -2.8040 5.7615 24 6 6.3518 -5.4971 2.3300 25 6 5.2695 -5.2822 1.3030 26 1 4.6676 -6.1807 1.1675 27 6 2.6163 -1.5342 3.4517 28 16 1.6953 -0.2328 2.8350 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 4.3549 -2.8879 -0.3086 37 1 3.4823 -4.4802 -0.4140 38 1 6.4978 -2.7546 0.5189 39 1 7.1698 -3.4432 -0.9786 40 1 8.3213 -5.2000 0.3412 41 1 8.8016 -3.5768 0.9026 42 1 7.5315 -6.4132 5.4155 43 1 5.9273 -5.3455 3.3226 44 1 6.7044 -6.5259 2.2568 45 1 2.7722 -1.7539 4.4976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084723856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:30 Heat of formation + Delta-G solvation = 45.557431 kcal Electronic energy + Delta-G solvation = -27799.213161 eV Core-core repulsion = 24137.487817 eV Total energy + Delta-G solvation = -3661.725345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.94471 -40.81984 -38.94574 -37.04483 -36.40263 -33.99417 -32.01313 -31.29263 -30.56730 -28.68821 -28.02803 -26.69311 -25.71965 -24.75553 -23.49001 -22.57915 -21.53408 -20.76245 -19.72297 -19.28094 -17.99861 -17.46166 -17.31338 -17.02062 -16.51077 -16.22578 -15.93810 -15.54323 -15.21380 -15.04091 -14.81688 -14.66047 -14.39460 -14.23899 -13.95206 -13.72993 -13.53486 -13.21544 -13.07910 -12.99547 -12.77987 -12.73258 -12.61136 -12.41293 -12.22094 -12.12493 -11.98624 -11.87344 -11.78531 -11.52515 -11.33677 -10.81054 -10.74519 -10.67853 -10.42194 -9.95410 -9.50588 -8.71168 -7.87103 -5.30821 -0.53519 0.21281 0.56644 0.97843 1.32429 1.40313 1.44171 1.93027 2.36386 2.46163 2.82956 3.27951 3.45622 3.54936 3.72221 3.89582 3.98659 4.06547 4.15187 4.18292 4.21619 4.39009 4.42152 4.57534 4.58515 4.67890 4.72528 4.75182 4.80100 4.90911 4.94400 4.97130 4.97897 5.03984 5.12600 5.18232 5.29646 5.35054 5.38036 5.41075 5.53934 5.68504 5.81149 6.38155 6.41978 6.81414 7.17432 7.21238 7.94987 8.33269 9.17073 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.004132 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.226532 B = 6774.986278 C = 7807.379304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.025 3.975 5 N -0.453 5.453 6 C 0.003 3.997 7 C 0.592 3.408 8 O -0.581 6.581 9 N -0.621 5.621 10 C 0.130 3.870 11 C -0.100 4.100 12 H 0.129 0.871 13 C -0.103 4.103 14 C 0.138 3.862 15 N -0.600 5.600 16 C -0.260 4.260 17 H 0.061 0.939 18 C -0.045 4.045 19 N -0.931 5.931 20 Si 0.956 3.044 21 H -0.301 1.301 22 H -0.287 1.287 23 H -0.262 1.262 24 C 0.179 3.821 25 C 0.111 3.889 26 H 0.091 0.909 27 C -0.258 4.258 28 S 0.284 5.716 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.034 0.966 39 H 0.101 0.899 40 H 0.031 0.969 41 H 0.052 0.948 42 H 0.245 0.755 43 H 0.057 0.943 44 H -0.005 1.005 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.218 14.816 -15.996 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.205 4.205 4 C -0.254 4.254 5 N -0.168 5.168 6 C -0.132 4.132 7 C 0.379 3.621 8 O -0.462 6.462 9 N -0.355 5.355 10 C 0.009 3.991 11 C -0.119 4.119 12 H 0.147 0.853 13 C -0.142 4.142 14 C 0.013 3.987 15 N -0.323 5.323 16 C -0.390 4.390 17 H 0.079 0.921 18 C -0.240 4.240 19 N -0.578 5.578 20 Si 0.785 3.215 21 H -0.229 1.229 22 H -0.213 1.213 23 H -0.186 1.186 24 C 0.052 3.948 25 C 0.007 3.993 26 H 0.109 0.891 27 C -0.401 4.401 28 S 0.542 5.458 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.053 0.947 39 H 0.119 0.881 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.013 0.987 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -17.524 15.176 -15.175 27.707 hybrid contribution 1.131 -1.193 2.078 2.649 sum -16.394 13.983 -13.097 25.215 Atomic orbital electron populations 1.21949 0.91499 1.02715 1.04155 1.20022 0.97213 0.95697 0.90971 1.21965 1.01219 0.93159 1.04181 1.27995 0.99425 0.96418 1.01591 1.66985 1.13346 1.11537 1.24941 1.20248 1.04390 0.99761 0.88826 1.17250 0.78906 0.82610 0.83324 1.90843 1.60431 1.69256 1.25673 1.50306 1.48945 1.29060 1.07175 1.24009 0.96665 1.02218 0.76178 1.22880 0.94992 0.98281 0.95725 0.85290 1.21710 0.95203 0.96671 1.00648 1.21006 0.95115 0.97518 0.85083 1.43480 1.31720 1.55296 1.01842 1.19403 1.28447 1.02506 0.88652 0.92117 1.25637 1.01374 0.95834 1.01178 1.70181 1.53049 1.10677 1.23883 0.85429 0.77404 0.78182 0.80501 1.22933 1.21310 1.18613 1.19543 0.86531 0.91040 0.97647 1.22747 0.91451 0.88979 0.96120 0.89134 1.26789 1.05316 1.02336 1.05655 1.82156 1.42807 1.22455 0.98343 0.88820 0.92772 0.91613 0.87795 0.93175 0.88729 0.91614 0.88689 0.87511 0.94695 0.88090 0.95057 0.92948 0.94635 0.92500 0.98678 0.80802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.09 71.98 0.65 -0.64 16 2 C -0.02 -0.22 3.34 -11.54 -0.04 -0.26 16 3 C -0.15 -1.47 9.09 71.98 0.65 -0.82 16 4 C 0.03 0.55 6.00 88.58 0.53 1.08 16 5 N -0.45 -13.35 8.71 -180.83 -1.58 -14.92 16 6 C 0.00 0.10 6.69 40.56 0.27 0.37 16 7 C 0.59 27.50 7.95 86.62 0.69 28.19 16 8 O -0.58 -33.38 15.77 -4.13 -0.07 -33.45 16 9 N -0.62 -25.25 3.39 -818.35 -2.78 -28.02 16 10 C 0.13 3.65 7.25 86.22 0.63 4.27 16 11 C -0.10 -3.01 4.34 -10.32 -0.04 -3.06 16 12 H 0.13 2.88 8.14 -2.38 -0.02 2.86 16 13 C -0.10 -3.42 5.66 30.63 0.17 -3.25 16 14 C 0.14 5.86 6.45 86.39 0.56 6.42 16 15 N -0.60 -32.91 2.99 -710.35 -2.13 -35.04 16 16 C -0.26 -15.92 9.55 84.04 0.80 -15.12 16 17 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 18 C -0.04 -2.82 4.96 84.86 0.42 -2.40 16 19 N -0.93 -61.34 10.91 21.65 0.24 -61.11 16 20 Si 0.96 51.09 29.58 68.60 2.03 53.12 16 21 H -0.30 -16.68 7.11 99.48 0.71 -15.97 16 22 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 23 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.18 9.77 4.55 85.99 0.39 10.16 16 25 C 0.11 4.57 4.27 44.01 0.19 4.76 16 26 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 27 C -0.26 -8.25 10.62 67.12 0.71 -7.54 16 28 S 0.28 5.66 22.22 -56.49 -1.26 4.41 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.51 7.92 -2.39 -0.02 0.49 16 32 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.06 0.58 7.91 -2.38 -0.02 0.56 16 36 H 0.09 2.56 7.20 -2.39 -0.02 2.55 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.03 1.34 7.70 -2.39 -0.02 1.32 16 39 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 2.21 7.88 -2.38 -0.02 2.19 16 42 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 43 H 0.06 3.70 4.71 -2.38 -0.01 3.69 16 44 H 0.00 -0.27 7.99 -2.38 -0.02 -0.28 16 45 H 0.17 5.84 8.03 -2.91 -0.02 5.82 16 Total: -1.00 -86.70 371.62 2.04 -84.66 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.99 Total: 8.19 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 6.59 Total: 22.16 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -6.24 Total: -139.09 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.07 Total: -33.45 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.03 Total: 53.12 kcal Atomic # 16 Polarization: 5.66 SS G_CDS: -1.26 Total: 4.41 kcal Total: -86.70 2.04 -84.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084723856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.217 kcal (2) G-P(sol) polarization free energy of solvation -86.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds