Wall clock time and date at job start Tue Mar 31 2020 18:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 C 1.50696 * 109.47156 * 240.00261 * 2 1 3 5 5 S 1.70946 * 125.58873 * 54.16752 * 4 2 1 6 6 C 1.70773 * 91.12981 * 179.97438 * 5 4 2 7 7 N 1.28653 * 110.55443 * 0.34997 * 6 5 4 8 8 C 1.33554 * 115.76960 * 359.73306 * 7 6 5 9 9 C 1.47267 * 123.13952 * 179.97438 * 8 7 6 10 10 O 1.21632 * 119.99869 * 185.92370 * 9 8 7 11 11 N 1.34779 * 119.99928 * 5.92515 * 9 8 7 12 12 C 1.47285 * 136.54408 * 359.62583 * 11 9 8 13 13 C 1.54358 * 87.50292 * 151.47767 * 12 11 9 14 14 H 1.09008 * 115.78939 * 141.80576 * 13 12 11 15 15 C 1.53064 * 111.57099 * 274.16801 * 13 12 11 16 16 C 1.53149 * 109.21110 * 142.38330 * 15 13 12 17 17 N 1.46541 * 108.24826 * 301.58890 * 16 15 13 18 18 C 1.36940 * 119.73812 * 236.40115 * 17 16 15 19 19 H 1.08004 * 119.99797 * 33.95116 * 18 17 16 20 20 C 1.38809 * 119.99804 * 213.96138 * 18 17 16 21 21 N 1.31619 * 120.00112 * 356.52666 * 20 18 17 22 22 Si 1.86803 * 119.99750 * 176.53399 * 20 18 17 23 23 H 1.48495 * 109.47300 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47106 * 119.99695 * 22 20 18 25 25 H 1.48507 * 109.46912 * 239.99390 * 22 20 18 26 26 C 1.45699 * 120.52230 * 56.42353 * 17 16 15 27 27 C 1.46468 * 136.54172 * 180.02562 * 11 9 8 28 28 H 1.09000 * 111.44259 * 97.06319 * 27 11 9 29 29 H 1.08999 * 109.46974 * 60.00312 * 1 2 3 30 30 H 1.08995 * 109.46984 * 299.99779 * 1 2 3 31 31 H 1.09003 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46974 * 119.99688 * 2 1 3 33 33 H 1.09005 * 109.47247 * 60.00149 * 3 2 1 34 34 H 1.08999 * 109.47161 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47345 * 300.00104 * 3 2 1 36 36 H 1.07995 * 124.72267 * 180.02562 * 6 5 4 37 37 H 1.08998 * 113.52632 * 266.09852 * 12 11 9 38 38 H 1.08993 * 113.53350 * 36.73774 * 12 11 9 39 39 H 1.08994 * 109.51918 * 22.45952 * 15 13 12 40 40 H 1.09005 * 109.55878 * 262.32649 * 15 13 12 41 41 H 1.08998 * 109.70735 * 181.90565 * 16 15 13 42 42 H 1.08999 * 109.74713 * 61.30039 * 16 15 13 43 43 H 0.97006 * 119.99697 * 180.02562 * 21 20 18 44 44 H 1.09000 * 108.78516 * 199.10280 * 26 17 16 45 45 H 1.09000 * 108.78872 * 80.89869 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 16 1.5967 -0.3388 -2.8412 6 6 2.6000 -1.5862 -3.4360 7 7 3.1808 -2.2001 -2.4659 8 6 2.8961 -1.7505 -1.2410 9 6 3.4691 -2.3336 -0.0160 10 8 3.0894 -1.9516 1.0745 11 7 4.4143 -3.2904 -0.1035 12 6 5.1144 -4.0062 -1.1837 13 6 6.3079 -4.1595 -0.2169 14 1 6.8384 -5.1105 -0.2655 15 6 7.2263 -2.9357 -0.2582 16 6 7.7366 -2.6407 1.1553 17 7 6.5780 -2.4141 2.0235 18 6 6.4732 -1.2423 2.7243 19 1 6.8471 -0.3230 2.2982 20 6 5.8867 -1.2361 3.9824 21 7 5.3699 -2.3428 4.4730 22 14 5.8306 0.3429 4.9790 23 1 6.4751 1.4371 4.2094 24 1 4.4170 0.7008 5.2601 25 1 6.5555 0.1456 6.2600 26 6 5.5370 -3.4259 2.1473 27 6 5.2043 -4.0932 0.8329 28 1 4.7590 -5.0757 0.9896 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.7252 -1.8296 -4.4807 37 1 4.6473 -4.9538 -1.4517 38 1 5.3315 -3.3816 -2.0501 39 1 6.6705 -2.0756 -0.6315 40 1 8.0720 -3.1361 -0.9161 41 1 8.3648 -1.7501 1.1409 42 1 8.3116 -3.4901 1.5240 43 1 4.9597 -2.3383 5.3521 44 1 4.6355 -2.9557 2.5403 45 1 5.8693 -4.1871 2.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084769928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:34 Heat of formation + Delta-G solvation = 76.878364 kcal Electronic energy + Delta-G solvation = -28421.016545 eV Core-core repulsion = 24760.649378 eV Total energy + Delta-G solvation = -3660.367167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.68468 -39.60548 -37.28875 -35.58212 -35.04698 -32.06953 -30.13193 -29.93125 -28.77593 -27.09720 -26.84170 -25.47638 -23.77042 -23.05493 -21.82416 -21.32801 -20.79215 -19.29220 -18.06571 -17.51255 -16.54252 -15.99149 -15.71421 -15.45745 -15.01801 -14.81104 -14.15553 -14.07004 -13.77312 -13.62019 -13.22050 -13.09997 -13.09117 -12.94255 -12.57278 -12.26406 -12.18927 -11.99759 -11.81462 -11.42365 -11.31479 -11.17425 -11.10038 -10.80305 -10.75129 -10.48619 -10.36020 -10.12939 -9.84258 -9.80556 -9.69860 -9.42195 -9.35064 -8.86455 -8.81961 -8.25750 -7.98349 -6.41373 -5.62744 -3.13098 0.62007 1.25469 1.66438 2.24189 3.44623 3.46334 3.52426 3.54513 3.84084 4.18486 4.60762 4.72572 4.81751 4.94243 4.99113 5.22337 5.31693 5.41232 5.55026 5.56755 5.58340 5.63034 5.64146 5.84072 5.84666 5.85591 5.94117 5.95308 6.08024 6.14843 6.24168 6.32806 6.34899 6.45065 6.51929 6.58381 6.64580 6.69936 6.88523 7.09937 7.48164 7.60299 7.90091 8.01256 8.41762 8.68400 8.80554 9.42618 10.03070 10.55375 11.44351 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.005466 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.971941 B = 5121.772779 C = 6833.433290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.140 4.140 4 C -0.164 4.164 5 S 0.178 5.822 6 C -0.015 4.015 7 N -0.431 5.431 8 C 0.008 3.992 9 C 0.618 3.382 10 O -0.506 6.506 11 N -0.613 5.613 12 C 0.110 3.890 13 C -0.119 4.119 14 H 0.091 0.909 15 C -0.114 4.114 16 C 0.149 3.851 17 N -0.585 5.585 18 C -0.251 4.251 19 H 0.058 0.942 20 C 0.016 3.984 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.167 3.833 27 C 0.118 3.882 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.200 0.800 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.019 0.981 43 H 0.251 0.749 44 H 0.107 0.893 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 0.334 -17.212 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.198 4.198 4 C -0.288 4.288 5 S 0.433 5.567 6 C -0.315 4.315 7 N -0.145 5.145 8 C -0.126 4.126 9 C 0.404 3.596 10 O -0.382 6.382 11 N -0.347 5.347 12 C -0.013 4.013 13 C -0.138 4.138 14 H 0.109 0.891 15 C -0.153 4.153 16 C 0.022 3.978 17 N -0.308 5.308 18 C -0.380 4.380 19 H 0.076 0.924 20 C -0.183 4.183 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.041 3.959 27 C 0.014 3.986 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.216 0.784 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.564 0.921 -17.046 18.672 hybrid contribution 0.241 0.217 0.913 0.969 sum -7.322 1.138 -16.134 17.754 Atomic orbital electron populations 1.21885 0.94085 1.02026 1.01846 1.20336 0.95562 0.96157 0.95376 1.21845 1.01988 0.94287 1.01631 1.25637 1.01734 1.00495 1.00924 1.82649 1.43275 1.33825 0.96957 1.28272 1.00922 0.98790 1.03487 1.67034 1.21987 1.27329 0.98129 1.20530 1.01658 0.98051 0.92344 1.16322 0.77952 0.79107 0.86247 1.90744 1.59738 1.60621 1.27089 1.49133 1.37817 1.36046 1.11665 1.23269 0.90010 0.95564 0.92481 1.22842 0.94714 0.99595 0.96673 0.89128 1.21814 0.97518 0.96092 0.99909 1.20749 0.90112 0.98222 0.88728 1.43420 1.17918 1.17844 1.51591 1.19062 1.37352 0.86111 0.95525 0.92392 1.25208 1.00039 0.96483 0.96538 1.69971 1.41246 1.25776 1.17580 0.86273 0.77296 0.83309 0.80251 1.20437 1.21663 1.21668 1.20295 0.95311 0.91744 0.88561 1.22782 0.87569 0.93168 0.95039 0.91068 0.93104 0.91526 0.92465 0.84223 0.91555 0.92047 0.93227 0.78365 0.90934 0.90292 0.92326 0.92846 0.92729 0.96285 0.93823 0.87463 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.04 37.16 0.34 -1.40 16 2 C -0.05 -0.83 3.12 -91.77 -0.29 -1.12 16 3 C -0.14 -1.95 9.17 37.16 0.34 -1.61 16 4 C -0.16 -2.51 5.03 -35.39 -0.18 -2.69 16 5 S 0.18 1.91 22.42 -107.50 -2.41 -0.50 16 6 C -0.02 -0.17 12.17 51.43 0.63 0.46 16 7 N -0.43 -6.52 8.87 -12.36 -0.11 -6.63 16 8 C 0.01 0.14 6.69 -84.53 -0.57 -0.42 16 9 C 0.62 13.18 7.97 -12.59 -0.10 13.08 16 10 O -0.51 -12.54 13.11 5.25 0.07 -12.48 16 11 N -0.61 -12.14 3.33 -188.84 -0.63 -12.77 16 12 C 0.11 1.73 6.99 -11.39 -0.08 1.65 16 13 C -0.12 -1.97 4.57 -90.15 -0.41 -2.38 16 14 H 0.09 1.27 8.14 -51.92 -0.42 0.84 16 15 C -0.11 -2.03 5.71 -26.62 -0.15 -2.19 16 16 C 0.15 3.18 6.46 -3.94 -0.03 3.16 16 17 N -0.59 -15.23 3.02 -174.88 -0.53 -15.76 16 18 C -0.25 -7.23 9.43 -15.06 -0.14 -7.37 16 19 H 0.06 1.68 7.83 -52.48 -0.41 1.27 16 20 C 0.02 0.47 5.28 -17.43 -0.09 0.38 16 21 N -0.90 -27.29 10.63 55.49 0.59 -26.70 16 22 Si 0.90 22.95 29.55 -169.99 -5.02 17.92 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C 0.17 4.23 4.55 -5.42 -0.02 4.21 16 27 C 0.12 2.38 4.03 -77.66 -0.31 2.07 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.14 2.74 4.95 -51.93 -0.26 2.49 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.21 7.32 -51.93 -0.38 0.83 16 39 H 0.06 1.18 7.69 -51.93 -0.40 0.78 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.16 7.90 -51.93 -0.41 0.75 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.11 3.17 5.07 -51.93 -0.26 2.91 16 45 H 0.03 0.77 7.95 -51.93 -0.41 0.36 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -33.88 366.81 -10.31 -44.19 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.73 Total: 1.37 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.07 Total: 5.82 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: -0.68 Total: -61.85 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.41 Total: -0.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.88 -10.31 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084769928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.066 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds