Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46816 * 2 1 4 4 C 1.50696 * 109.47156 * 240.00261 * 2 1 3 5 5 S 1.70946 * 125.58873 * 54.16752 * 4 2 1 6 6 C 1.70773 * 91.12981 * 179.97438 * 5 4 2 7 7 N 1.28653 * 110.55443 * 0.34997 * 6 5 4 8 8 C 1.33554 * 115.76960 * 359.73306 * 7 6 5 9 9 C 1.47267 * 123.13952 * 179.97438 * 8 7 6 10 10 O 1.21632 * 119.99869 * 185.92370 * 9 8 7 11 11 N 1.34779 * 119.99928 * 5.92515 * 9 8 7 12 12 C 1.47285 * 136.54408 * 359.62583 * 11 9 8 13 13 C 1.54358 * 87.50292 * 151.47767 * 12 11 9 14 14 H 1.09008 * 115.78939 * 141.80576 * 13 12 11 15 15 C 1.53064 * 111.57099 * 274.16801 * 13 12 11 16 16 C 1.53149 * 109.21110 * 142.38330 * 15 13 12 17 17 N 1.46541 * 108.24826 * 301.58890 * 16 15 13 18 18 C 1.36940 * 119.73812 * 236.40115 * 17 16 15 19 19 H 1.08004 * 119.99797 * 33.95116 * 18 17 16 20 20 C 1.38809 * 119.99804 * 213.96138 * 18 17 16 21 21 N 1.31619 * 120.00112 * 356.52666 * 20 18 17 22 22 Si 1.86803 * 119.99750 * 176.53399 * 20 18 17 23 23 H 1.48495 * 109.47300 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47106 * 119.99695 * 22 20 18 25 25 H 1.48507 * 109.46912 * 239.99390 * 22 20 18 26 26 C 1.45699 * 120.52230 * 56.42353 * 17 16 15 27 27 C 1.46468 * 136.54172 * 180.02562 * 11 9 8 28 28 H 1.09000 * 111.44259 * 97.06319 * 27 11 9 29 29 H 1.08999 * 109.46974 * 60.00312 * 1 2 3 30 30 H 1.08995 * 109.46984 * 299.99779 * 1 2 3 31 31 H 1.09003 * 109.47118 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46974 * 119.99688 * 2 1 3 33 33 H 1.09005 * 109.47247 * 60.00149 * 3 2 1 34 34 H 1.08999 * 109.47161 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47345 * 300.00104 * 3 2 1 36 36 H 1.07995 * 124.72267 * 180.02562 * 6 5 4 37 37 H 1.08998 * 113.52632 * 266.09852 * 12 11 9 38 38 H 1.08993 * 113.53350 * 36.73774 * 12 11 9 39 39 H 1.08994 * 109.51918 * 22.45952 * 15 13 12 40 40 H 1.09005 * 109.55878 * 262.32649 * 15 13 12 41 41 H 1.08998 * 109.70735 * 181.90565 * 16 15 13 42 42 H 1.08999 * 109.74713 * 61.30039 * 16 15 13 43 43 H 0.97006 * 119.99697 * 180.02562 * 21 20 18 44 44 H 1.09000 * 108.78516 * 199.10280 * 26 17 16 45 45 H 1.09000 * 108.78872 * 80.89869 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 16 1.5967 -0.3388 -2.8412 6 6 2.6000 -1.5862 -3.4360 7 7 3.1808 -2.2001 -2.4659 8 6 2.8961 -1.7505 -1.2410 9 6 3.4691 -2.3336 -0.0160 10 8 3.0894 -1.9516 1.0745 11 7 4.4143 -3.2904 -0.1035 12 6 5.1144 -4.0062 -1.1837 13 6 6.3079 -4.1595 -0.2169 14 1 6.8384 -5.1105 -0.2655 15 6 7.2263 -2.9357 -0.2582 16 6 7.7366 -2.6407 1.1553 17 7 6.5780 -2.4141 2.0235 18 6 6.4732 -1.2423 2.7243 19 1 6.8471 -0.3230 2.2982 20 6 5.8867 -1.2361 3.9824 21 7 5.3699 -2.3428 4.4730 22 14 5.8306 0.3429 4.9790 23 1 6.4751 1.4371 4.2094 24 1 4.4170 0.7008 5.2601 25 1 6.5555 0.1456 6.2600 26 6 5.5370 -3.4259 2.1473 27 6 5.2043 -4.0932 0.8329 28 1 4.7590 -5.0757 0.9896 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.7252 -1.8296 -4.4807 37 1 4.6473 -4.9538 -1.4517 38 1 5.3315 -3.3816 -2.0501 39 1 6.6705 -2.0756 -0.6315 40 1 8.0720 -3.1361 -0.9161 41 1 8.3648 -1.7501 1.1409 42 1 8.3116 -3.4901 1.5240 43 1 4.9597 -2.3383 5.3521 44 1 4.6355 -2.9557 2.5403 45 1 5.8693 -4.1871 2.8532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084769928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = 54.318249 kcal Electronic energy + Delta-G solvation = -28421.994825 eV Core-core repulsion = 24760.649378 eV Total energy + Delta-G solvation = -3661.345447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09163 -40.85948 -38.79300 -37.09716 -36.60133 -33.99050 -31.94835 -31.32255 -30.19777 -28.62947 -28.16449 -26.61987 -25.67304 -24.55715 -23.20114 -22.46855 -22.45045 -20.72053 -19.51390 -19.05830 -18.06189 -17.41605 -17.28383 -17.01835 -16.43539 -16.17183 -15.86018 -15.49018 -15.26243 -14.96631 -14.76902 -14.64307 -14.52264 -14.26175 -14.03916 -13.97529 -13.53383 -13.18747 -13.07436 -13.06141 -12.77353 -12.75542 -12.51804 -12.46628 -12.29484 -12.23829 -12.01121 -11.96287 -11.68785 -11.49026 -11.08131 -10.70301 -10.61368 -10.38543 -10.28062 -9.95669 -9.46879 -8.54044 -7.84722 -5.38317 -0.43692 0.28546 0.66956 1.07393 1.36166 1.38561 1.47885 2.03874 2.42398 2.46848 3.13675 3.29575 3.41661 3.56799 3.73850 3.81108 3.91701 4.01918 4.11388 4.18175 4.31294 4.44847 4.51216 4.59304 4.60016 4.63228 4.69197 4.74959 4.78874 4.80642 4.84546 4.93211 5.00475 5.05872 5.09962 5.14831 5.23617 5.29620 5.39417 5.44790 5.58373 5.70221 5.87246 6.45521 6.46830 6.94257 7.21654 7.28773 7.95432 8.38244 9.18652 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.005466 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.971941 B = 5121.772779 C = 6833.433290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.192 4.192 5 S 0.274 5.726 6 C -0.007 4.007 7 N -0.455 5.455 8 C -0.020 4.020 9 C 0.600 3.400 10 O -0.563 6.563 11 N -0.623 5.623 12 C 0.126 3.874 13 C -0.104 4.104 14 H 0.132 0.868 15 C -0.102 4.102 16 C 0.142 3.858 17 N -0.603 5.603 18 C -0.259 4.259 19 H 0.051 0.949 20 C -0.040 4.040 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.267 1.267 24 H -0.297 1.297 25 H -0.282 1.282 26 C 0.182 3.818 27 C 0.105 3.895 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.030 0.970 43 H 0.245 0.755 44 H 0.057 0.943 45 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.968 0.620 -21.690 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C -0.192 4.192 4 C -0.316 4.316 5 S 0.530 5.470 6 C -0.306 4.306 7 N -0.170 5.170 8 C -0.154 4.154 9 C 0.388 3.612 10 O -0.443 6.443 11 N -0.356 5.356 12 C 0.004 3.996 13 C -0.123 4.123 14 H 0.150 0.850 15 C -0.141 4.141 16 C 0.016 3.984 17 N -0.326 5.326 18 C -0.389 4.389 19 H 0.068 0.932 20 C -0.235 4.235 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.192 1.192 24 H -0.224 1.224 25 H -0.208 1.208 26 C 0.056 3.944 27 C 0.000 4.000 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.262 0.738 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.051 0.949 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -7.646 1.194 -21.587 22.932 hybrid contribution 0.255 0.169 2.213 2.234 sum -7.391 1.363 -19.374 20.781 Atomic orbital electron populations 1.21831 0.91682 1.02017 1.03496 1.20196 0.97539 0.96240 0.94069 1.21804 1.00065 0.93927 1.03372 1.25820 1.01641 1.00263 1.03908 1.82229 1.41064 1.31840 0.91840 1.29096 0.99091 0.97714 1.04669 1.66983 1.23710 1.28704 0.97565 1.20147 1.03421 0.99637 0.92159 1.17080 0.77857 0.79097 0.87145 1.90731 1.61636 1.62385 1.29577 1.49364 1.37390 1.35854 1.12946 1.23367 0.88547 0.96305 0.91389 1.22891 0.94191 1.00771 0.94438 0.85005 1.21680 0.98885 0.95804 0.97703 1.20956 0.88796 0.98483 0.90123 1.43647 1.19719 1.17026 1.52223 1.19276 1.36656 0.87138 0.95869 0.93167 1.25935 1.00331 0.99509 0.97773 1.70178 1.42264 1.27633 1.17436 0.85333 0.76769 0.80191 0.79019 1.19173 1.22425 1.20816 1.19844 0.93046 0.90464 0.91036 1.22778 0.90353 0.93281 0.93570 0.89413 0.90202 0.91048 0.93290 0.89447 0.91218 0.94945 0.90006 0.73769 0.87990 0.89397 0.94940 0.88346 0.93169 0.95192 0.94524 0.92496 0.98592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.04 71.98 0.65 -2.57 16 2 C -0.06 -1.92 3.12 -11.54 -0.04 -1.96 16 3 C -0.13 -3.80 9.17 71.98 0.66 -3.14 16 4 C -0.19 -5.81 5.03 24.98 0.13 -5.68 16 5 S 0.27 4.86 22.42 -56.49 -1.27 3.59 16 6 C -0.01 -0.12 12.17 130.71 1.59 1.47 16 7 N -0.46 -12.80 8.87 -193.03 -1.71 -14.51 16 8 C -0.02 -0.71 6.69 40.56 0.27 -0.44 16 9 C 0.60 27.10 7.97 86.62 0.69 27.79 16 10 O -0.56 -30.78 13.11 -4.13 -0.05 -30.83 16 11 N -0.62 -25.14 3.33 -869.60 -2.89 -28.03 16 12 C 0.13 3.62 6.99 81.19 0.57 4.19 16 13 C -0.10 -3.19 4.57 -10.49 -0.05 -3.24 16 14 H 0.13 3.05 8.14 -2.38 -0.02 3.03 16 15 C -0.10 -3.44 5.71 30.67 0.17 -3.26 16 16 C 0.14 6.07 6.46 86.42 0.56 6.63 16 17 N -0.60 -32.84 3.02 -707.21 -2.14 -34.98 16 18 C -0.26 -15.73 9.43 84.03 0.79 -14.93 16 19 H 0.05 3.06 7.83 -2.91 -0.02 3.03 16 20 C -0.04 -2.46 5.28 84.86 0.45 -2.01 16 21 N -0.93 -60.11 10.63 21.65 0.23 -59.88 16 22 Si 0.96 49.59 29.55 68.60 2.03 51.62 16 23 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.30 -15.58 7.11 99.48 0.71 -14.87 16 25 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 26 C 0.18 9.85 4.55 85.92 0.39 10.24 16 27 C 0.10 4.29 4.03 38.70 0.16 4.44 16 28 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 29 H 0.08 1.44 7.82 -2.39 -0.02 1.42 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 3.82 4.95 -2.39 -0.01 3.81 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.25 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.09 2.43 7.32 -2.39 -0.02 2.41 16 39 H 0.03 1.27 7.69 -2.39 -0.02 1.25 16 40 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.05 2.15 7.90 -2.39 -0.02 2.13 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.06 3.66 5.07 -2.39 -0.01 3.65 16 45 H 0.00 -0.22 7.95 -2.39 -0.02 -0.24 16 Total: -1.00 -84.55 366.81 2.18 -82.37 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.99 Total: 13.10 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: 6.99 Total: 17.55 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -6.51 Total: -137.40 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.83 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.03 Total: 51.62 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.27 Total: 3.59 kcal Total: -84.55 2.18 -82.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084769928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.689 kcal (2) G-P(sol) polarization free energy of solvation -84.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds