Wall clock time and date at job start Tue Mar 31 2020 18:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46931 * 2 1 4 4 C 1.50694 * 109.47346 * 119.99947 * 2 1 3 5 5 N 1.29426 * 124.80898 * 300.04285 * 4 2 1 6 6 C 1.30949 * 117.36687 * 179.69489 * 5 4 2 7 7 C 1.35654 * 114.18946 * 0.48125 * 6 5 4 8 8 C 1.46686 * 126.12859 * 179.82595 * 7 6 5 9 9 O 1.21693 * 119.99812 * 186.59260 * 8 7 6 10 10 N 1.34768 * 120.00101 * 6.58895 * 8 7 6 11 11 C 1.47811 * 135.01443 * 355.82270 * 10 8 7 12 12 C 1.54651 * 85.79425 * 153.84171 * 11 10 8 13 13 H 1.08997 * 114.44394 * 140.42499 * 12 11 10 14 14 C 1.53017 * 110.83454 * 270.23583 * 12 11 10 15 15 C 1.53107 * 109.44737 * 143.88702 * 14 12 11 16 16 N 1.46615 * 108.04912 * 300.99726 * 15 14 12 17 17 C 1.36941 * 119.89053 * 237.35260 * 16 15 14 18 18 H 1.07989 * 119.99844 * 34.29198 * 17 16 15 19 19 C 1.38819 * 119.99572 * 214.29134 * 17 16 15 20 20 N 1.31614 * 120.00385 * 355.81475 * 19 17 16 21 21 Si 1.86797 * 119.99263 * 175.81601 * 19 17 16 22 22 H 1.48500 * 109.47620 * 90.00080 * 21 19 17 23 23 H 1.48499 * 109.46963 * 209.99856 * 21 19 17 24 24 H 1.48499 * 109.47406 * 329.99923 * 21 19 17 25 25 C 1.45774 * 120.15512 * 57.29806 * 16 15 14 26 26 C 1.46816 * 135.01413 * 175.87205 * 10 8 7 27 27 H 1.09000 * 111.56207 * 94.44887 * 26 10 8 28 28 S 1.70957 * 124.80478 * 120.00237 * 4 2 1 29 29 H 1.08997 * 109.47506 * 60.00099 * 1 2 3 30 30 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47366 * 299.99505 * 1 2 3 32 32 H 1.08998 * 109.46995 * 240.00102 * 2 1 3 33 33 H 1.08996 * 109.47155 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47388 * 299.99985 * 3 2 1 35 35 H 1.08998 * 109.47198 * 60.00225 * 3 2 1 36 36 H 1.08001 * 122.90066 * 180.30812 * 6 5 4 37 37 H 1.08999 * 113.81842 * 39.62474 * 11 10 8 38 38 H 1.08996 * 113.93387 * 268.07804 * 11 10 8 39 39 H 1.08993 * 109.47694 * 23.89258 * 14 12 11 40 40 H 1.09003 * 109.47362 * 263.87736 * 14 12 11 41 41 H 1.09003 * 109.75436 * 60.65084 * 15 14 12 42 42 H 1.08998 * 109.75572 * 181.34465 * 15 14 12 43 43 H 0.96995 * 120.00003 * 180.02562 * 20 19 17 44 44 H 1.09000 * 108.70465 * 199.78692 * 25 16 15 45 45 H 1.09008 * 108.59880 * 81.71344 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7771 -0.3507 2.4472 6 6 2.2849 -1.0793 3.4094 7 6 3.0322 -2.1263 2.9786 8 6 3.7222 -3.1036 3.8274 9 8 4.4616 -3.9301 3.3262 10 7 3.5373 -3.0863 5.1622 11 6 2.8039 -2.2154 6.1049 12 6 2.7253 -3.4616 7.0172 13 1 2.8650 -3.2535 8.0780 14 6 1.4652 -4.2765 6.7180 15 6 1.7769 -5.7686 6.8618 16 7 2.8529 -6.1004 5.9228 17 6 2.6591 -7.0737 4.9792 18 1 1.6839 -7.2090 4.5355 19 6 3.7162 -7.8864 4.5932 20 7 4.9226 -7.6688 5.0721 21 14 3.4263 -9.2888 3.3938 22 1 3.6196 -8.8004 2.0048 23 1 4.3892 -10.3847 3.6715 24 1 2.0397 -9.7964 3.5515 25 6 4.1273 -5.3960 5.9908 26 6 3.9814 -3.9241 6.2831 27 1 4.8857 -3.5283 6.7454 28 16 3.0194 -2.1061 1.2167 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.1250 -0.8636 4.4555 37 1 1.8357 -1.8806 5.7325 38 1 3.4050 -1.4051 6.5172 39 1 1.1327 -4.0712 5.7006 40 1 0.6785 -4.0003 7.4202 41 1 2.0990 -5.9810 7.8813 42 1 0.8887 -6.3549 6.6265 43 1 5.6613 -8.2364 4.8021 44 1 4.6432 -5.5139 5.0379 45 1 4.7339 -5.8497 6.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084875823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:36 Heat of formation + Delta-G solvation = 72.602820 kcal Electronic energy + Delta-G solvation = -27457.136353 eV Core-core repulsion = 23796.583785 eV Total energy + Delta-G solvation = -3660.552569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62539 -39.68194 -37.54800 -35.59019 -35.15637 -32.18003 -30.66920 -30.17599 -28.27585 -27.42346 -27.05619 -25.85929 -23.97195 -23.05863 -22.55692 -21.13100 -20.69739 -19.08069 -18.06196 -17.75123 -16.91680 -15.97258 -15.79317 -15.46854 -15.12626 -14.87047 -14.46268 -14.24215 -14.05081 -13.76820 -13.52977 -13.32252 -13.03630 -12.92035 -12.68180 -12.39068 -12.36002 -11.98315 -11.86295 -11.58634 -11.48366 -11.43656 -11.26838 -10.96803 -10.79074 -10.63604 -10.47621 -10.22731 -10.01012 -9.86324 -9.79324 -9.57325 -9.36968 -9.01706 -8.89136 -8.31945 -8.15033 -6.47649 -5.68256 -3.19286 0.35424 1.19412 1.73809 2.56963 3.26871 3.45147 3.50633 3.51566 3.59206 3.90471 4.55620 4.57043 4.64633 4.70610 4.79012 4.80550 5.15112 5.20398 5.26230 5.37977 5.38478 5.46602 5.50711 5.52437 5.55350 5.58123 5.66316 5.70115 5.85231 5.91741 5.96681 6.06686 6.13424 6.18401 6.31266 6.38469 6.52954 6.59633 6.80102 7.00702 7.51797 7.61037 7.83847 7.94544 8.18952 8.61553 8.64450 9.36838 9.96551 10.49632 11.39074 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003946 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.795718 B = 7093.651185 C = 8218.756979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.139 4.139 4 C 0.033 3.967 5 N -0.474 5.474 6 C 0.071 3.929 7 C -0.269 4.269 8 C 0.610 3.390 9 O -0.513 6.513 10 N -0.618 5.618 11 C 0.085 3.915 12 C -0.107 4.107 13 H 0.089 0.911 14 C -0.119 4.119 15 C 0.148 3.852 16 N -0.586 5.586 17 C -0.258 4.258 18 H 0.059 0.941 19 C 0.017 3.983 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.164 3.836 26 C 0.128 3.872 27 H 0.075 0.925 28 S 0.221 5.779 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.183 0.817 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.108 0.892 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 18.459 -3.738 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.198 4.198 4 C -0.242 4.242 5 N -0.188 5.188 6 C -0.086 4.086 7 C -0.394 4.394 8 C 0.396 3.604 9 O -0.389 6.389 10 N -0.355 5.355 11 C -0.038 4.038 12 C -0.126 4.126 13 H 0.108 0.892 14 C -0.158 4.158 15 C 0.021 3.979 16 N -0.309 5.309 17 C -0.388 4.388 18 H 0.077 0.923 19 C -0.182 4.182 20 N -0.543 5.543 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.038 3.962 26 C 0.024 3.976 27 H 0.092 0.908 28 S 0.480 5.520 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.199 0.801 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.126 0.874 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.971 17.702 -5.032 19.348 hybrid contribution -0.152 -0.394 0.385 0.572 sum -6.123 17.308 -4.646 18.938 Atomic orbital electron populations 1.21804 0.92749 1.02530 1.02777 1.19839 0.97010 0.96061 0.90937 1.21797 1.01186 0.94001 1.02791 1.27478 1.00904 0.98630 0.97148 1.66024 1.23538 1.30729 0.98485 1.22482 0.94834 0.91010 1.00286 1.25969 1.10755 1.04904 0.97776 1.16170 0.81112 0.82803 0.80272 1.90920 1.37434 1.37942 1.72583 1.49568 1.52184 1.30388 1.03312 1.23786 0.96323 0.95076 0.88607 1.22855 0.97139 0.94535 0.98109 0.89241 1.21882 0.94371 0.98721 1.00832 1.20765 0.92619 0.91539 0.92967 1.43463 1.11424 1.41024 1.34974 1.19022 0.96282 1.07746 1.15712 0.92285 1.25252 0.96129 0.97649 0.99176 1.69947 0.99248 1.39220 1.45928 0.86334 0.77359 0.82399 0.80947 1.21392 1.21535 1.20486 1.20257 0.88596 0.83430 1.03903 1.22818 0.95750 0.97051 0.81951 0.90755 1.84151 1.43576 1.23292 1.00941 0.91648 0.92399 0.91401 0.89268 0.92518 0.91658 0.91409 0.80073 0.90325 0.89922 0.92210 0.92634 0.96121 0.92533 0.93645 0.87421 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 37.16 0.34 -0.82 16 2 C -0.02 -0.15 3.35 -91.78 -0.31 -0.46 16 3 C -0.14 -1.10 9.17 37.16 0.34 -0.76 16 4 C 0.03 0.42 5.90 -13.29 -0.08 0.34 16 5 N -0.47 -6.54 10.49 -11.50 -0.12 -6.66 16 6 C 0.07 1.03 10.59 -18.85 -0.20 0.83 16 7 C -0.27 -4.61 6.48 -37.10 -0.24 -4.85 16 8 C 0.61 12.68 7.92 -12.85 -0.10 12.58 16 9 O -0.51 -13.11 16.18 5.20 0.08 -13.02 16 10 N -0.62 -11.37 3.34 -175.53 -0.59 -11.96 16 11 C 0.09 1.12 6.48 -3.00 -0.02 1.10 16 12 C -0.11 -1.61 4.39 -89.97 -0.40 -2.00 16 13 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 14 C -0.12 -1.96 5.66 -26.67 -0.15 -2.11 16 15 C 0.15 3.04 6.47 -3.92 -0.03 3.02 16 16 N -0.59 -14.99 3.02 -174.99 -0.53 -15.52 16 17 C -0.26 -7.39 9.45 -15.05 -0.14 -7.54 16 18 H 0.06 1.69 7.83 -52.49 -0.41 1.27 16 19 C 0.02 0.51 5.30 -17.43 -0.09 0.41 16 20 N -0.90 -27.20 10.65 55.49 0.59 -26.61 16 21 Si 0.90 22.91 29.56 -169.99 -5.02 17.89 16 22 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.16 4.08 4.59 -5.55 -0.03 4.05 16 26 C 0.13 2.44 4.22 -69.59 -0.29 2.15 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 S 0.22 3.27 23.01 -107.50 -2.47 0.80 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.69 8.12 -51.93 -0.42 0.26 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.18 2.23 4.78 -52.49 -0.25 1.98 16 37 H 0.08 0.93 6.06 -51.93 -0.31 0.61 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.16 7.90 -51.93 -0.41 0.75 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.11 3.18 5.04 -51.93 -0.26 2.91 16 45 H 0.03 0.87 7.93 -51.92 -0.41 0.46 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -34.63 369.94 -10.54 -45.17 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.67 Total: -1.59 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -1.39 Total: 5.94 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.64 Total: -60.75 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.02 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.47 Total: 0.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.63 -10.54 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084875823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.769 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds