Wall clock time and date at job start Tue Mar 31 2020 18:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46931 * 2 1 4 4 C 1.50694 * 109.47346 * 119.99947 * 2 1 3 5 5 N 1.29426 * 124.80898 * 300.04285 * 4 2 1 6 6 C 1.30949 * 117.36687 * 179.69489 * 5 4 2 7 7 C 1.35654 * 114.18946 * 0.48125 * 6 5 4 8 8 C 1.46686 * 126.12859 * 179.82595 * 7 6 5 9 9 O 1.21693 * 119.99812 * 186.59260 * 8 7 6 10 10 N 1.34768 * 120.00101 * 6.58895 * 8 7 6 11 11 C 1.47811 * 135.01443 * 355.82270 * 10 8 7 12 12 C 1.54651 * 85.79425 * 153.84171 * 11 10 8 13 13 H 1.08997 * 114.44394 * 140.42499 * 12 11 10 14 14 C 1.53017 * 110.83454 * 270.23583 * 12 11 10 15 15 C 1.53107 * 109.44737 * 143.88702 * 14 12 11 16 16 N 1.46615 * 108.04912 * 300.99726 * 15 14 12 17 17 C 1.36941 * 119.89053 * 237.35260 * 16 15 14 18 18 H 1.07989 * 119.99844 * 34.29198 * 17 16 15 19 19 C 1.38819 * 119.99572 * 214.29134 * 17 16 15 20 20 N 1.31614 * 120.00385 * 355.81475 * 19 17 16 21 21 Si 1.86797 * 119.99263 * 175.81601 * 19 17 16 22 22 H 1.48500 * 109.47620 * 90.00080 * 21 19 17 23 23 H 1.48499 * 109.46963 * 209.99856 * 21 19 17 24 24 H 1.48499 * 109.47406 * 329.99923 * 21 19 17 25 25 C 1.45774 * 120.15512 * 57.29806 * 16 15 14 26 26 C 1.46816 * 135.01413 * 175.87205 * 10 8 7 27 27 H 1.09000 * 111.56207 * 94.44887 * 26 10 8 28 28 S 1.70957 * 124.80478 * 120.00237 * 4 2 1 29 29 H 1.08997 * 109.47506 * 60.00099 * 1 2 3 30 30 H 1.09004 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47366 * 299.99505 * 1 2 3 32 32 H 1.08998 * 109.46995 * 240.00102 * 2 1 3 33 33 H 1.08996 * 109.47155 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47388 * 299.99985 * 3 2 1 35 35 H 1.08998 * 109.47198 * 60.00225 * 3 2 1 36 36 H 1.08001 * 122.90066 * 180.30812 * 6 5 4 37 37 H 1.08999 * 113.81842 * 39.62474 * 11 10 8 38 38 H 1.08996 * 113.93387 * 268.07804 * 11 10 8 39 39 H 1.08993 * 109.47694 * 23.89258 * 14 12 11 40 40 H 1.09003 * 109.47362 * 263.87736 * 14 12 11 41 41 H 1.09003 * 109.75436 * 60.65084 * 15 14 12 42 42 H 1.08998 * 109.75572 * 181.34465 * 15 14 12 43 43 H 0.96995 * 120.00003 * 180.02562 * 20 19 17 44 44 H 1.09000 * 108.70465 * 199.78692 * 25 16 15 45 45 H 1.09008 * 108.59880 * 81.71344 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7771 -0.3507 2.4472 6 6 2.2849 -1.0793 3.4094 7 6 3.0322 -2.1263 2.9786 8 6 3.7222 -3.1036 3.8274 9 8 4.4616 -3.9301 3.3262 10 7 3.5373 -3.0863 5.1622 11 6 2.8039 -2.2154 6.1049 12 6 2.7253 -3.4616 7.0172 13 1 2.8650 -3.2535 8.0780 14 6 1.4652 -4.2765 6.7180 15 6 1.7769 -5.7686 6.8618 16 7 2.8529 -6.1004 5.9228 17 6 2.6591 -7.0737 4.9792 18 1 1.6839 -7.2090 4.5355 19 6 3.7162 -7.8864 4.5932 20 7 4.9226 -7.6688 5.0721 21 14 3.4263 -9.2888 3.3938 22 1 3.6196 -8.8004 2.0048 23 1 4.3892 -10.3847 3.6715 24 1 2.0397 -9.7964 3.5515 25 6 4.1273 -5.3960 5.9908 26 6 3.9814 -3.9241 6.2831 27 1 4.8857 -3.5283 6.7454 28 16 3.0194 -2.1061 1.2167 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.1250 -0.8636 4.4555 37 1 1.8357 -1.8806 5.7325 38 1 3.4050 -1.4051 6.5172 39 1 1.1327 -4.0712 5.7006 40 1 0.6785 -4.0003 7.4202 41 1 2.0990 -5.9810 7.8813 42 1 0.8887 -6.3549 6.6265 43 1 5.6613 -8.2364 4.8021 44 1 4.6432 -5.5139 5.0379 45 1 4.7339 -5.8497 6.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084875823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:35 Heat of formation + Delta-G solvation = 49.065856 kcal Electronic energy + Delta-G solvation = -27458.156992 eV Core-core repulsion = 23796.583785 eV Total energy + Delta-G solvation = -3661.573208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.99771 -40.83090 -39.11561 -37.03751 -36.38315 -34.02884 -32.12252 -31.86973 -29.73159 -28.67215 -28.04738 -26.96507 -25.77765 -24.60868 -23.66847 -22.54829 -22.07750 -20.31367 -19.51684 -19.12571 -18.41577 -17.50965 -17.34373 -16.95183 -16.33161 -16.18272 -15.88805 -15.56099 -15.33984 -15.15435 -14.92173 -14.83656 -14.37139 -14.32890 -14.04178 -13.76961 -13.56160 -13.11343 -12.97178 -12.90976 -12.78676 -12.66376 -12.60987 -12.34106 -12.26093 -12.15249 -11.99745 -11.95933 -11.82278 -11.48003 -11.29533 -10.92805 -10.63384 -10.57653 -10.42084 -10.05327 -9.57914 -8.55687 -7.87459 -5.41228 -0.80589 0.04767 0.62330 1.36054 1.39088 1.40004 1.47026 1.91654 2.17096 2.45687 2.92755 3.27411 3.41056 3.45763 3.71130 3.73602 3.93867 4.01877 4.10904 4.12074 4.14957 4.34991 4.46756 4.49463 4.54648 4.69299 4.73010 4.77685 4.82192 4.82857 4.91564 4.94784 4.99118 5.07134 5.09797 5.11445 5.29599 5.34308 5.38955 5.42612 5.57260 5.69930 5.85336 6.43187 6.48054 6.77097 7.13439 7.19650 7.93586 8.36485 9.15762 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003946 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.795718 B = 7093.651185 C = 8218.756979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.022 4.022 3 C -0.135 4.135 4 C 0.066 3.934 5 N -0.483 5.483 6 C 0.099 3.901 7 C -0.310 4.310 8 C 0.600 3.400 9 O -0.585 6.585 10 N -0.625 5.625 11 C 0.098 3.902 12 C -0.094 4.094 13 H 0.134 0.866 14 C -0.108 4.108 15 C 0.140 3.860 16 N -0.605 5.605 17 C -0.266 4.266 18 H 0.054 0.946 19 C -0.041 4.041 20 N -0.928 5.928 21 Si 0.959 3.041 22 H -0.295 1.295 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.179 3.821 26 C 0.113 3.887 27 H 0.093 0.907 28 S 0.187 5.813 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.208 0.792 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.037 0.963 40 H 0.102 0.898 41 H 0.031 0.969 42 H 0.050 0.950 43 H 0.246 0.754 44 H 0.053 0.947 45 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.467 21.937 -3.104 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.209 4.209 5 N -0.197 5.197 6 C -0.059 4.059 7 C -0.434 4.434 8 C 0.389 3.611 9 O -0.467 6.467 10 N -0.359 5.359 11 C -0.022 4.022 12 C -0.113 4.113 13 H 0.152 0.848 14 C -0.147 4.147 15 C 0.015 3.985 16 N -0.329 5.329 17 C -0.396 4.396 18 H 0.072 0.928 19 C -0.237 4.237 20 N -0.574 5.574 21 Si 0.787 3.213 22 H -0.223 1.223 23 H -0.212 1.212 24 H -0.187 1.187 25 C 0.053 3.947 26 C 0.008 3.992 27 H 0.111 0.889 28 S 0.447 5.553 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.224 0.776 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.056 0.944 40 H 0.121 0.879 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -8.772 21.219 -4.339 23.367 hybrid contribution 0.616 -1.394 0.168 1.533 sum -8.156 19.825 -4.171 21.840 Atomic orbital electron populations 1.21805 0.91623 1.02307 1.03784 1.20185 0.97784 0.96737 0.89748 1.21793 1.00972 0.92827 1.03759 1.28241 0.97946 0.96534 0.98143 1.66172 1.24133 1.30671 0.98712 1.22847 0.92318 0.89159 1.01539 1.25615 1.13595 1.06103 0.98107 1.16711 0.80511 0.82564 0.81301 1.90874 1.40710 1.41017 1.74080 1.49764 1.51951 1.31197 1.02964 1.24092 0.97497 0.94750 0.85870 1.22860 0.93479 0.94471 1.00494 0.84825 1.21766 0.96531 0.95446 1.00941 1.20992 0.90732 0.94709 0.92113 1.43705 1.12617 1.41021 1.35538 1.19294 0.95902 1.08210 1.16214 0.92804 1.25996 0.96052 1.00186 1.01476 1.70162 0.99727 1.39874 1.47598 0.85408 0.78013 0.79646 0.78259 1.22285 1.21213 1.18681 1.19786 0.87672 0.87365 0.99902 1.22783 0.99294 0.93332 0.83749 0.88915 1.84263 1.45061 1.25273 1.00734 0.88922 0.93242 0.92153 0.87553 0.92887 0.88998 0.92159 0.77593 0.88151 0.85655 0.94387 0.87943 0.95131 0.93132 0.94502 0.92850 0.98362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.17 71.98 0.66 -1.20 16 2 C -0.02 -0.35 3.35 -11.54 -0.04 -0.39 16 3 C -0.13 -1.71 9.17 71.98 0.66 -1.05 16 4 C 0.07 1.56 5.90 88.46 0.52 2.08 16 5 N -0.48 -12.18 10.49 -190.31 -2.00 -14.18 16 6 C 0.10 2.66 10.59 84.23 0.89 3.55 16 7 C -0.31 -10.65 6.48 23.88 0.15 -10.49 16 8 C 0.60 25.87 7.92 86.45 0.69 26.55 16 9 O -0.59 -32.37 16.18 -4.32 -0.07 -32.44 16 10 N -0.62 -22.57 3.34 -827.46 -2.77 -25.34 16 11 C 0.10 2.14 6.48 86.33 0.56 2.70 16 12 C -0.09 -2.46 4.39 -10.31 -0.05 -2.50 16 13 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 14 C -0.11 -3.23 5.66 30.64 0.17 -3.05 16 15 C 0.14 5.65 6.47 86.39 0.56 6.21 16 16 N -0.60 -32.04 3.02 -707.55 -2.14 -34.18 16 17 C -0.27 -15.91 9.45 84.03 0.79 -15.12 16 18 H 0.05 3.20 7.83 -2.92 -0.02 3.18 16 19 C -0.04 -2.52 5.30 84.86 0.45 -2.07 16 20 N -0.93 -59.80 10.65 21.65 0.23 -59.57 16 21 Si 0.96 49.26 29.56 68.60 2.03 51.29 16 22 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 23 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 24 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 25 C 0.18 9.38 4.59 85.79 0.39 9.77 16 26 C 0.11 4.26 4.22 43.74 0.18 4.44 16 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 28 S 0.19 5.63 23.01 -56.49 -1.30 4.33 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 1.35 8.12 -2.39 -0.02 1.33 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.21 4.21 4.78 -2.91 -0.01 4.20 16 37 H 0.10 1.81 6.06 -2.39 -0.01 1.80 16 38 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.31 7.69 -2.39 -0.02 1.29 16 40 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 2.06 7.90 -2.39 -0.02 2.04 16 43 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.05 3.40 5.04 -2.39 -0.01 3.38 16 45 H 0.00 -0.08 7.93 -2.38 -0.02 -0.10 16 Total: -1.00 -85.40 369.94 1.59 -83.81 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.00 Total: 6.84 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 6.60 Total: 19.44 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -6.67 Total: -133.27 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.07 Total: -32.44 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.29 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.30 Total: 4.33 kcal Total: -85.40 1.59 -83.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084875823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.876 kcal (2) G-P(sol) polarization free energy of solvation -85.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds