Wall clock time and date at job start Tue Mar 31 2020 19:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21632 * 120.00506 * 0.02562 * 8 7 5 10 10 C 1.47271 * 119.99697 * 180.02562 * 8 7 5 11 11 C 1.35204 * 123.13872 * 179.70959 * 10 8 7 12 12 S 1.70944 * 108.82717 * 179.90527 * 11 10 8 13 13 C 1.70764 * 91.12520 * 0.30288 * 12 11 10 14 14 C 1.50705 * 124.71763 * 179.82438 * 13 12 11 15 15 C 1.53005 * 117.50036 * 8.74193 * 14 13 12 16 16 C 1.53001 * 117.49507 * 300.08617 * 14 13 12 17 17 N 1.28642 * 110.56310 * 359.81878 * 13 12 11 18 18 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 19 19 C 1.54910 * 101.58094 * 35.30826 * 18 5 3 20 20 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 21 21 C 1.36929 * 125.64715 * 298.39367 * 20 3 2 22 22 H 1.07995 * 120.00262 * 333.70687 * 21 20 3 23 23 C 1.38817 * 119.99616 * 153.71303 * 21 20 3 24 24 N 1.31623 * 119.99847 * 334.82944 * 23 21 20 25 25 Si 1.86801 * 120.00106 * 154.83543 * 23 21 20 26 26 H 1.48500 * 109.46938 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47159 * 239.99924 * 25 23 21 28 28 H 1.48497 * 109.47066 * 119.99285 * 25 23 21 29 29 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 30 30 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 31 31 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 32 32 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 33 33 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 34 34 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 35 35 H 1.08003 * 125.59128 * 0.02832 * 11 10 8 36 36 H 1.08995 * 115.55384 * 154.41908 * 14 13 12 37 37 H 1.09004 * 117.49642 * 0.02562 * 15 14 13 38 38 H 1.08994 * 117.49669 * 145.01900 * 15 14 13 39 39 H 1.09010 * 117.49761 * 214.97725 * 16 14 13 40 40 H 1.08993 * 117.50039 * 359.97438 * 16 14 13 41 41 H 1.09000 * 111.00497 * 277.23103 * 18 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 18 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 19 18 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 19 18 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0265 0.8675 -1.0623 10 6 5.7075 1.6759 -3.2266 11 6 6.9441 1.3728 -3.6817 12 16 7.0609 1.8475 -5.3197 13 6 5.4561 2.4310 -5.3000 14 6 4.7583 3.0634 -6.4765 15 6 5.4662 3.0069 -7.8318 16 6 5.3787 4.3306 -7.0682 17 7 4.9257 2.2555 -4.1412 18 6 3.9754 2.6210 0.8567 19 6 2.9035 2.4946 1.9679 20 7 1.6707 2.1033 1.2604 21 6 0.3933 2.3150 1.7059 22 1 -0.4192 2.3937 0.9989 23 6 0.1428 2.4287 3.0666 24 7 0.9579 1.8681 3.9349 25 14 -1.3511 3.3769 3.6653 26 1 -2.1014 3.9067 2.4984 27 1 -0.9097 4.5057 4.5233 28 1 -2.2296 2.4726 4.4499 29 1 -0.3633 0.3815 0.9543 30 1 -0.3633 0.6357 -0.8074 31 1 -0.3634 -1.0171 -0.1468 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.4132 2.1561 -2.0887 35 1 7.7289 0.9054 -3.1054 36 1 3.6708 2.9898 -6.4733 37 1 6.4365 2.5119 -7.8725 38 1 4.8444 2.8963 -8.7201 39 1 4.6994 5.0905 -7.4546 40 1 6.2913 4.7071 -6.6062 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087846230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:54 Heat of formation + Delta-G solvation = 50.773194 kcal Electronic energy + Delta-G solvation = -26513.407824 eV Core-core repulsion = 22851.908652 eV Total energy + Delta-G solvation = -3661.499172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66726 -39.19613 -37.91170 -37.29424 -34.21944 -32.54512 -31.90936 -30.78077 -28.67945 -27.16894 -26.13451 -24.62745 -23.53247 -22.96647 -21.77212 -21.17351 -20.28748 -20.15987 -19.44366 -18.55338 -17.31524 -16.72496 -16.54021 -15.97442 -15.46067 -15.02107 -14.53925 -14.34190 -14.16991 -13.86427 -13.69986 -13.53013 -13.08412 -12.86419 -12.74497 -12.37886 -12.34843 -12.09239 -11.98322 -11.60851 -11.34763 -11.08612 -11.05260 -10.88946 -10.72911 -10.46505 -10.26087 -10.15985 -10.08147 -10.06769 -9.91400 -9.88478 -9.80437 -9.40722 -9.13248 -8.68460 -8.36735 -6.87810 -6.02733 -3.19376 0.23156 0.88177 1.29793 1.76089 3.17625 3.27539 3.42650 3.51919 3.54845 3.58549 3.67853 4.24111 4.39362 4.46165 4.59618 4.75295 4.94771 5.05377 5.08685 5.16856 5.31618 5.36103 5.38131 5.47063 5.48947 5.53239 5.64739 5.74045 5.96931 6.00995 6.10157 6.19627 6.32097 6.43024 6.53067 6.61349 6.69975 6.80979 6.97529 7.06071 7.12795 7.18262 7.36234 7.70982 7.90604 8.29229 8.52332 9.04703 9.82021 10.40953 11.25076 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002619 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.788896 B =10690.198127 C =11242.733204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.038 0.962 5 C 0.134 3.866 6 H 0.094 0.906 7 N -0.694 5.694 8 C 0.591 3.409 9 O -0.537 6.537 10 C 0.019 3.981 11 C -0.229 4.229 12 S 0.203 5.797 13 C 0.058 3.942 14 C -0.086 4.086 15 C -0.169 4.169 16 C -0.159 4.159 17 N -0.439 5.439 18 C -0.144 4.144 19 C 0.144 3.856 20 N -0.590 5.590 21 C -0.324 4.324 22 H 0.064 0.936 23 C -0.025 4.025 24 N -0.915 5.915 25 Si 1.069 2.931 26 H -0.292 1.292 27 H -0.291 1.291 28 H -0.294 1.294 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.408 0.592 35 H 0.190 0.810 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.785 1.721 -24.008 26.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.056 0.944 5 C 0.029 3.971 6 H 0.112 0.888 7 N -0.344 5.344 8 C 0.374 3.626 9 O -0.414 6.414 10 C -0.116 4.116 11 C -0.371 4.371 12 S 0.461 5.539 13 C -0.221 4.221 14 C -0.107 4.107 15 C -0.207 4.207 16 C -0.198 4.198 17 N -0.154 5.154 18 C -0.183 4.183 19 C 0.018 3.982 20 N -0.316 5.316 21 C -0.452 4.452 22 H 0.081 0.919 23 C -0.227 4.227 24 N -0.555 5.555 25 Si 0.899 3.101 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.222 1.222 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.244 0.756 35 H 0.208 0.792 36 H 0.154 0.846 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.630 2.024 -22.646 25.538 hybrid contribution 0.202 -0.697 -0.669 0.987 sum 11.833 1.327 -23.315 26.179 Atomic orbital electron populations 1.21887 0.95607 0.98843 1.04211 1.21877 0.97122 0.97558 0.99639 1.21190 0.89488 0.92391 0.91958 0.94441 1.22164 0.95800 0.99180 0.79935 0.88848 1.45882 1.13632 1.60707 1.14160 1.17032 0.82437 0.78714 0.84459 1.90813 1.53883 1.43762 1.52977 1.20509 0.91093 1.03874 0.96118 1.26627 1.02476 1.07558 1.00440 1.82681 1.13472 1.52003 1.05774 1.26189 0.95953 1.03652 0.96322 1.20426 0.99588 1.01894 0.88827 1.23173 1.02232 1.00958 0.94364 1.23176 1.03198 0.91026 1.02384 1.66817 1.34519 1.14129 0.99944 1.23197 0.99431 0.97750 0.97965 1.21545 0.85279 0.98627 0.92717 1.44519 1.01924 1.65388 1.19746 1.19653 0.83756 1.49109 0.92662 0.91868 1.25831 1.03981 1.00597 0.92332 1.70694 1.19096 1.29250 1.36424 0.83476 0.75078 0.76383 0.75173 1.21792 1.21743 1.22168 0.88949 0.94280 0.95226 0.94323 0.92551 0.75642 0.79234 0.84612 0.88334 0.87078 0.87256 0.88170 0.91581 0.91509 0.93097 0.95207 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.98 37.16 0.33 -2.66 16 2 C -0.12 -2.46 5.47 -26.73 -0.15 -2.61 16 3 C 0.16 3.26 3.00 -66.94 -0.20 3.06 16 4 H 0.04 0.79 7.69 -51.93 -0.40 0.39 16 5 C 0.13 2.54 2.76 -66.09 -0.18 2.36 16 6 H 0.09 1.89 7.40 -51.92 -0.38 1.50 16 7 N -0.69 -11.58 5.20 -53.14 -0.28 -11.85 16 8 C 0.59 9.93 7.79 -12.59 -0.10 9.84 16 9 O -0.54 -10.40 16.44 5.25 0.09 -10.31 16 10 C 0.02 0.27 6.70 -84.53 -0.57 -0.30 16 11 C -0.23 -2.59 10.62 29.65 0.31 -2.27 16 12 S 0.20 1.62 21.65 -107.50 -2.33 -0.71 16 13 C 0.06 0.58 6.99 -13.61 -0.10 0.48 16 14 C -0.09 -0.62 6.33 -91.77 -0.58 -1.20 16 15 C -0.17 -0.79 10.01 -26.69 -0.27 -1.06 16 16 C -0.16 -0.84 10.24 -26.69 -0.27 -1.12 16 17 N -0.44 -5.70 10.12 -8.51 -0.09 -5.78 16 18 C -0.14 -2.83 6.77 -24.58 -0.17 -3.00 16 19 C 0.14 3.38 5.56 -2.53 -0.01 3.37 16 20 N -0.59 -14.48 2.92 -162.56 -0.47 -14.95 16 21 C -0.32 -8.70 7.22 -15.06 -0.11 -8.81 16 22 H 0.06 1.71 7.24 -52.49 -0.38 1.33 16 23 C -0.02 -0.69 5.18 -17.43 -0.09 -0.78 16 24 N -0.91 -27.24 13.05 55.49 0.72 -26.52 16 25 Si 1.07 25.21 29.99 -169.99 -5.10 20.11 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.09 2.17 5.52 -51.93 -0.29 1.88 16 30 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.41 6.35 7.84 -40.82 -0.32 6.03 16 35 H 0.19 1.95 8.03 -52.48 -0.42 1.53 16 36 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 0.41 7.21 -51.93 -0.37 0.04 16 38 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.46 8.14 -51.92 -0.42 0.03 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.03 0.75 6.73 -51.93 -0.35 0.40 16 45 H 0.27 8.13 6.20 -40.82 -0.25 7.87 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -31.97 377.72 -10.52 -42.48 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.61 Total: 6.53 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.14 Total: -4.69 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.11 Total: -59.11 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.11 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.33 Total: -0.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.97 -10.52 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087846230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.258 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds