Wall clock time and date at job start Tue Mar 31 2020 19:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21632 * 120.00506 * 0.02562 * 8 7 5 10 10 C 1.47271 * 119.99697 * 180.02562 * 8 7 5 11 11 C 1.35204 * 123.13872 * 179.70959 * 10 8 7 12 12 S 1.70944 * 108.82717 * 179.90527 * 11 10 8 13 13 C 1.70764 * 91.12520 * 0.30288 * 12 11 10 14 14 C 1.50705 * 124.71763 * 179.82438 * 13 12 11 15 15 C 1.53005 * 117.50036 * 8.74193 * 14 13 12 16 16 C 1.53001 * 117.49507 * 300.08617 * 14 13 12 17 17 N 1.28642 * 110.56310 * 359.81878 * 13 12 11 18 18 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 19 19 C 1.54910 * 101.58094 * 35.30826 * 18 5 3 20 20 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 21 21 C 1.36929 * 125.64715 * 298.39367 * 20 3 2 22 22 H 1.07995 * 120.00262 * 333.70687 * 21 20 3 23 23 C 1.38817 * 119.99616 * 153.71303 * 21 20 3 24 24 N 1.31623 * 119.99847 * 334.82944 * 23 21 20 25 25 Si 1.86801 * 120.00106 * 154.83543 * 23 21 20 26 26 H 1.48500 * 109.46938 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47159 * 239.99924 * 25 23 21 28 28 H 1.48497 * 109.47066 * 119.99285 * 25 23 21 29 29 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 30 30 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 31 31 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 32 32 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 33 33 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 34 34 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 35 35 H 1.08003 * 125.59128 * 0.02832 * 11 10 8 36 36 H 1.08995 * 115.55384 * 154.41908 * 14 13 12 37 37 H 1.09004 * 117.49642 * 0.02562 * 15 14 13 38 38 H 1.08994 * 117.49669 * 145.01900 * 15 14 13 39 39 H 1.09010 * 117.49761 * 214.97725 * 16 14 13 40 40 H 1.08993 * 117.50039 * 359.97438 * 16 14 13 41 41 H 1.09000 * 111.00497 * 277.23103 * 18 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 18 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 19 18 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 19 18 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0265 0.8675 -1.0623 10 6 5.7075 1.6759 -3.2266 11 6 6.9441 1.3728 -3.6817 12 16 7.0609 1.8475 -5.3197 13 6 5.4561 2.4310 -5.3000 14 6 4.7583 3.0634 -6.4765 15 6 5.4662 3.0069 -7.8318 16 6 5.3787 4.3306 -7.0682 17 7 4.9257 2.2555 -4.1412 18 6 3.9754 2.6210 0.8567 19 6 2.9035 2.4946 1.9679 20 7 1.6707 2.1033 1.2604 21 6 0.3933 2.3150 1.7059 22 1 -0.4192 2.3937 0.9989 23 6 0.1428 2.4287 3.0666 24 7 0.9579 1.8681 3.9349 25 14 -1.3511 3.3769 3.6653 26 1 -2.1014 3.9067 2.4984 27 1 -0.9097 4.5057 4.5233 28 1 -2.2296 2.4726 4.4499 29 1 -0.3633 0.3815 0.9543 30 1 -0.3633 0.6357 -0.8074 31 1 -0.3634 -1.0171 -0.1468 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.4132 2.1561 -2.0887 35 1 7.7289 0.9054 -3.1054 36 1 3.6708 2.9898 -6.4733 37 1 6.4365 2.5119 -7.8725 38 1 4.8444 2.8963 -8.7201 39 1 4.6994 5.0905 -7.4546 40 1 6.2913 4.7071 -6.6062 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087846230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:53 Heat of formation + Delta-G solvation = 30.815521 kcal Electronic energy + Delta-G solvation = -26514.273254 eV Core-core repulsion = 22851.908652 eV Total energy + Delta-G solvation = -3662.364602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.74172 -40.47848 -39.32267 -37.95686 -35.86648 -34.33242 -33.68829 -31.67550 -30.52199 -28.75390 -27.20818 -26.26907 -24.74959 -23.50544 -23.31987 -22.17103 -21.79720 -21.53198 -20.80690 -19.62979 -19.24652 -17.87912 -17.46487 -17.09931 -16.62235 -16.13523 -16.07310 -15.67945 -15.48890 -15.24821 -15.10396 -14.86101 -14.65525 -14.56656 -14.07381 -13.78838 -13.39892 -13.29481 -13.06115 -12.87141 -12.70894 -12.57659 -12.40046 -12.23020 -11.92373 -11.88889 -11.86492 -11.79188 -11.62305 -11.51658 -11.41574 -11.31383 -10.90927 -10.62295 -10.46139 -10.25373 -9.79793 -8.95125 -8.19638 -5.34335 -0.59778 0.15480 0.50056 0.77897 1.59468 1.67148 1.82425 1.99842 2.16325 2.64898 2.70646 2.97706 3.24565 3.40420 3.61313 3.67658 3.71064 3.81105 4.00983 4.03479 4.05564 4.10462 4.22701 4.33347 4.37911 4.40961 4.51594 4.60851 4.69851 4.76080 4.81673 4.88692 4.94633 5.01008 5.01525 5.08812 5.09956 5.18179 5.20686 5.26613 5.47249 5.61444 5.82188 6.19963 6.37640 6.52130 6.93288 7.00060 7.72976 8.34204 9.06692 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.002619 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.788896 B =10690.198127 C =11242.733204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.157 3.843 4 H 0.046 0.954 5 C 0.149 3.851 6 H 0.081 0.919 7 N -0.689 5.689 8 C 0.591 3.409 9 O -0.570 6.570 10 C -0.010 4.010 11 C -0.241 4.241 12 S 0.299 5.701 13 C 0.045 3.955 14 C -0.111 4.111 15 C -0.151 4.151 16 C -0.155 4.155 17 N -0.469 5.469 18 C -0.128 4.128 19 C 0.150 3.850 20 N -0.606 5.606 21 C -0.313 4.313 22 H 0.063 0.937 23 C -0.079 4.079 24 N -0.948 5.948 25 Si 1.116 2.884 26 H -0.270 1.270 27 H -0.292 1.292 28 H -0.293 1.293 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.415 0.585 35 H 0.195 0.805 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.007 0.993 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.396 2.325 -27.814 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.050 3.950 4 H 0.064 0.936 5 C 0.043 3.957 6 H 0.099 0.901 7 N -0.338 5.338 8 C 0.376 3.624 9 O -0.449 6.449 10 C -0.145 4.145 11 C -0.384 4.384 12 S 0.558 5.442 13 C -0.233 4.233 14 C -0.133 4.133 15 C -0.189 4.189 16 C -0.194 4.194 17 N -0.185 5.185 18 C -0.168 4.168 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.442 4.442 22 H 0.081 0.919 23 C -0.276 4.276 24 N -0.591 5.591 25 Si 0.941 3.059 26 H -0.195 1.195 27 H -0.219 1.219 28 H -0.221 1.221 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.252 0.748 35 H 0.212 0.788 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.119 0.881 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.046 0.954 44 H 0.024 0.976 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.245 2.636 -26.526 29.334 hybrid contribution 0.114 -0.903 0.307 0.961 sum 12.358 1.733 -26.219 29.037 Atomic orbital electron populations 1.21761 0.95369 1.00299 1.02413 1.21809 0.97245 0.96919 0.99768 1.21274 0.90782 0.92632 0.90297 0.93598 1.21785 0.94397 0.98213 0.81262 0.90078 1.45705 1.14109 1.60987 1.13048 1.17445 0.81738 0.77625 0.85606 1.90785 1.54601 1.45213 1.54352 1.20118 0.92437 1.06753 0.95150 1.26932 1.01742 1.06746 1.02980 1.82310 1.10726 1.49192 1.01976 1.26729 0.97487 1.02949 0.96131 1.20554 0.99607 1.03863 0.89285 1.23319 1.02305 0.99881 0.93388 1.23294 1.03136 0.91130 1.01816 1.66785 1.35425 1.15423 1.00858 1.23042 0.98382 0.98576 0.96758 1.21379 0.86297 0.96529 0.93416 1.44725 1.01641 1.66174 1.20650 1.19830 0.84660 1.47140 0.92590 0.91915 1.27098 1.06005 1.01420 0.93051 1.70816 1.20157 1.31222 1.36856 0.82843 0.72517 0.75109 0.75407 1.19480 1.21916 1.22052 0.92619 0.93214 0.92943 0.91669 0.94790 0.74812 0.78756 0.85030 0.87539 0.85334 0.86102 0.88113 0.90678 0.90729 0.95433 0.97558 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 8.98 71.98 0.65 -4.94 16 2 C -0.12 -4.72 5.47 30.59 0.17 -4.55 16 3 C 0.16 6.52 3.00 45.34 0.14 6.65 16 4 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 5 C 0.15 5.70 2.76 46.18 0.13 5.82 16 6 H 0.08 3.34 7.40 -2.38 -0.02 3.32 16 7 N -0.69 -22.75 5.20 -440.29 -2.29 -25.04 16 8 C 0.59 19.81 7.79 86.62 0.68 20.49 16 9 O -0.57 -22.27 16.44 -4.13 -0.07 -22.34 16 10 C -0.01 -0.26 6.70 40.56 0.27 0.01 16 11 C -0.24 -5.08 10.62 67.12 0.71 -4.36 16 12 S 0.30 3.87 21.65 -56.49 -1.22 2.65 16 13 C 0.05 0.81 6.99 88.58 0.62 1.43 16 14 C -0.11 -1.34 6.33 -11.54 -0.07 -1.42 16 15 C -0.15 -0.86 10.01 30.62 0.31 -0.56 16 16 C -0.15 -1.18 10.24 30.62 0.31 -0.87 16 17 N -0.47 -11.65 10.12 -180.84 -1.83 -13.48 16 18 C -0.13 -5.11 6.77 31.99 0.22 -4.90 16 19 C 0.15 7.32 5.56 86.85 0.48 7.81 16 20 N -0.61 -30.44 2.92 -668.22 -1.95 -32.39 16 21 C -0.31 -17.12 7.22 84.04 0.61 -16.51 16 22 H 0.06 3.40 7.24 -2.91 -0.02 3.38 16 23 C -0.08 -4.52 5.18 84.86 0.44 -4.09 16 24 N -0.95 -58.65 13.05 21.65 0.28 -58.37 16 25 Si 1.12 51.56 29.99 68.60 2.06 53.62 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 28 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 29 H 0.05 2.63 5.52 -2.39 -0.01 2.62 16 30 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.41 12.63 7.84 -92.71 -0.73 11.91 16 35 H 0.20 3.76 8.03 -2.91 -0.02 3.74 16 36 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 0.43 7.21 -2.39 -0.02 0.42 16 38 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 42 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 43 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.01 0.35 6.73 -2.39 -0.02 0.34 16 45 H 0.25 16.14 6.20 -92.71 -0.57 15.56 16 Total: -1.00 -71.71 377.72 1.10 -70.60 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.48 Total: 24.74 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 5.65 Total: 0.02 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -5.79 Total: -129.28 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.07 Total: -22.34 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.06 Total: 53.62 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.22 Total: 2.65 kcal Total: -71.71 1.10 -70.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087846230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.418 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds