Wall clock time and date at job start Tue Mar 31 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47175 * 2 1 4 4 N 1.30946 * 122.90677 * 270.00196 * 3 2 1 5 5 C 1.29426 * 117.36578 * 180.02562 * 4 3 2 6 6 S 1.70951 * 110.39148 * 359.72186 * 5 4 3 7 7 C 1.35663 * 122.90570 * 89.99826 * 3 2 1 8 8 C 1.46684 * 126.12895 * 0.02562 * 7 3 2 9 9 O 1.21684 * 119.99891 * 354.17423 * 8 7 3 10 10 N 1.34775 * 120.00093 * 174.17617 * 8 7 3 11 11 C 1.47186 * 125.65024 * 4.89581 * 10 8 7 12 12 C 1.55411 * 106.93542 * 178.87377 * 11 10 8 13 13 H 1.09000 * 112.44855 * 145.11280 * 12 11 10 14 14 C 1.53083 * 106.81450 * 268.55359 * 12 11 10 15 15 C 1.51496 * 111.61691 * 163.91154 * 14 12 11 16 16 N 1.47237 * 107.90986 * 302.67524 * 15 14 12 17 17 C 1.36934 * 121.39153 * 237.95014 * 16 15 14 18 18 H 1.08001 * 120.00009 * 30.76605 * 17 16 15 19 19 C 1.38812 * 120.00273 * 210.77093 * 17 16 15 20 20 N 1.31620 * 119.99472 * 9.93873 * 19 17 16 21 21 Si 1.86797 * 120.00393 * 189.94020 * 19 17 16 22 22 H 1.48505 * 109.47152 * 89.99507 * 21 19 17 23 23 H 1.48493 * 109.47351 * 209.99504 * 21 19 17 24 24 H 1.48497 * 109.47082 * 329.99959 * 21 19 17 25 25 C 1.46698 * 117.21378 * 57.97565 * 16 15 14 26 26 C 1.50814 * 111.25036 * 307.84683 * 25 16 15 27 27 H 1.08999 * 109.22642 * 167.57689 * 26 25 16 28 28 C 1.47844 * 125.65070 * 184.93749 * 10 8 7 29 29 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47435 * 300.00121 * 1 2 3 31 31 H 1.09004 * 109.46846 * 59.99993 * 1 2 3 32 32 H 1.09007 * 109.47263 * 240.00424 * 2 1 3 33 33 H 1.09001 * 109.47576 * 120.00042 * 2 1 3 34 34 H 1.07997 * 124.80092 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.96787 * 59.50397 * 11 10 8 36 36 H 1.09000 * 109.96884 * 298.24678 * 11 10 8 37 37 H 1.09004 * 109.17853 * 284.35020 * 14 12 11 38 38 H 1.09000 * 109.18672 * 43.59794 * 14 12 11 39 39 H 1.09007 * 110.00821 * 182.89002 * 15 14 12 40 40 H 1.08991 * 109.46003 * 62.15046 * 15 14 12 41 41 H 0.97008 * 119.99635 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.12166 * 187.39059 * 25 16 15 43 43 H 1.08997 * 109.12553 * 68.30206 * 25 16 15 44 44 H 1.08995 * 110.52854 * 37.98273 * 28 10 8 45 45 H 1.09001 * 110.52725 * 275.23725 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6993 3.3059 -0.9744 6 16 2.8386 3.7214 0.6780 7 6 2.2779 2.1157 1.1390 8 6 2.1034 1.6207 2.5087 9 8 1.6041 0.5279 2.7017 10 7 2.4961 2.3762 3.5534 11 6 3.0176 3.7501 3.4705 12 6 3.3060 4.2134 4.9257 13 1 4.1792 4.8626 4.9904 14 6 2.0357 4.9022 5.4311 15 6 2.0427 5.0490 6.9389 16 7 2.1937 3.7063 7.5238 17 6 1.2642 3.1974 8.3911 18 1 0.2272 3.4854 8.3013 19 6 1.6547 2.3113 9.3857 20 7 2.9337 2.1103 9.6228 21 14 0.3652 1.4042 10.3876 22 1 0.0324 0.1203 9.7198 23 1 0.8962 1.1318 11.7473 24 1 -0.8582 2.2394 10.4920 25 6 3.3820 2.9367 7.1392 26 6 3.5259 2.8665 5.6396 27 1 4.5173 2.4877 5.3915 28 6 2.4751 1.9620 4.9725 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.9327 3.9649 -1.7975 35 1 2.2749 4.4031 3.0123 36 1 3.9375 3.7644 2.8861 37 1 1.9616 5.8919 4.9804 38 1 1.1676 4.3109 5.1399 39 1 1.1064 5.4950 7.2745 40 1 2.8801 5.6789 7.2385 41 1 3.2066 1.4908 10.3176 42 1 3.2969 1.9256 7.5375 43 1 4.2674 3.4123 7.5610 44 1 2.7569 0.9135 5.0688 45 1 1.4905 2.1355 5.4068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087986863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:36 Heat of formation + Delta-G solvation = 34.809750 kcal Electronic energy + Delta-G solvation = -27542.532709 eV Core-core repulsion = 23880.341310 eV Total energy + Delta-G solvation = -3662.191399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.59595 -39.86233 -38.05542 -35.39718 -33.52028 -32.73378 -31.35465 -30.52279 -29.70460 -27.54736 -26.57239 -25.39068 -23.75853 -23.31636 -21.94988 -21.49107 -20.92152 -18.69096 -18.51422 -18.30691 -17.04015 -16.20089 -15.99138 -15.94039 -15.12346 -14.70145 -14.60372 -14.22604 -14.13419 -13.80857 -13.74946 -13.62366 -13.43693 -12.95845 -12.64477 -12.41469 -12.31344 -12.09687 -12.01090 -11.88168 -11.35896 -11.11841 -10.97244 -10.92391 -10.79462 -10.73878 -10.57110 -10.23615 -10.06023 -9.93043 -9.72002 -9.68105 -9.52356 -9.45862 -9.10251 -8.57306 -8.38489 -6.67711 -5.82832 -3.30641 0.10800 1.04123 1.42440 2.33285 3.02016 3.16059 3.36946 3.44110 3.44286 3.94699 4.45739 4.49460 4.69547 4.80685 4.86768 5.02843 5.11919 5.31624 5.33210 5.37656 5.39379 5.42868 5.51139 5.57613 5.72667 5.81278 5.87977 5.92836 6.02465 6.15388 6.17809 6.21745 6.28647 6.31973 6.39660 6.47854 6.63993 6.71546 6.76159 6.92578 7.22022 7.41321 7.58450 7.61799 7.75361 8.15368 8.41773 9.17566 9.78169 10.38529 11.25513 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.003430 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.524434 B = 8162.430398 C = 9196.227407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.057 4.057 3 C 0.141 3.859 4 N -0.475 5.475 5 C 0.010 3.990 6 S 0.178 5.822 7 C -0.283 4.283 8 C 0.603 3.397 9 O -0.523 6.523 10 N -0.609 5.609 11 C 0.089 3.911 12 C -0.078 4.078 13 H 0.092 0.908 14 C -0.129 4.129 15 C 0.142 3.858 16 N -0.589 5.589 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.007 3.993 20 N -0.905 5.905 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.179 3.821 26 C -0.114 4.114 27 H 0.064 0.936 28 C 0.124 3.876 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.201 0.799 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.255 0.745 42 H 0.093 0.907 43 H 0.025 0.975 44 H 0.073 0.927 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 4.691 -19.128 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C 0.003 3.997 4 N -0.188 5.188 5 C -0.285 4.285 6 S 0.434 5.566 7 C -0.406 4.406 8 C 0.390 3.610 9 O -0.402 6.402 10 N -0.342 5.342 11 C -0.035 4.035 12 C -0.097 4.097 13 H 0.110 0.890 14 C -0.168 4.168 15 C 0.016 3.984 16 N -0.311 5.311 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.204 1.204 25 C 0.052 3.948 26 C -0.135 4.135 27 H 0.082 0.918 28 C 0.003 3.997 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.218 0.782 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.207 4.722 -18.976 19.679 hybrid contribution -0.724 -1.040 0.231 1.288 sum 1.484 3.682 -18.745 19.161 Atomic orbital electron populations 1.21590 0.93820 1.02139 1.01818 1.20372 0.96808 0.88303 1.04192 1.20705 0.95657 0.98332 0.85034 1.66152 1.14880 1.06329 1.31459 1.28879 1.01269 0.96235 1.02113 1.84289 1.58821 1.12220 1.01230 1.25577 1.17179 0.98679 0.99213 1.16265 0.78763 0.84248 0.81681 1.90804 1.44327 1.20591 1.84480 1.48561 1.62860 1.15093 1.07695 1.22600 0.98348 0.82994 0.99569 1.22096 0.99122 0.97469 0.90987 0.89018 1.21821 0.96586 0.98712 0.99675 1.20662 0.98951 0.88564 0.90248 1.43957 1.24839 1.11017 1.51314 1.19123 0.88585 1.23902 1.06401 0.91751 1.25144 0.95859 1.01408 0.96788 1.69948 1.13595 1.37962 1.33387 0.86278 0.80935 0.80017 0.79468 1.21301 1.21668 1.20426 1.20077 0.89154 0.99552 0.86010 1.22262 0.97504 0.93338 1.00353 0.91751 1.22269 1.01459 0.98992 0.76975 0.91863 0.92179 0.93090 0.90541 0.87969 0.78230 0.91184 0.91588 0.93066 0.92179 0.92525 0.96145 0.93537 0.88855 0.95719 0.90809 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.85 37.15 0.37 -1.26 16 2 C -0.06 -0.73 5.69 -27.89 -0.16 -0.89 16 3 C 0.14 1.90 6.04 -83.89 -0.51 1.39 16 4 N -0.47 -5.86 10.50 -11.53 -0.12 -5.98 16 5 C 0.01 0.09 12.22 51.75 0.63 0.72 16 6 S 0.18 1.74 18.74 -107.50 -2.01 -0.27 16 7 C -0.28 -3.90 6.39 -37.09 -0.24 -4.13 16 8 C 0.60 9.92 7.79 -12.85 -0.10 9.82 16 9 O -0.52 -9.90 14.44 5.20 0.08 -9.83 16 10 N -0.61 -9.63 3.34 -171.56 -0.57 -10.20 16 11 C 0.09 1.15 4.52 -2.39 -0.01 1.14 16 12 C -0.08 -1.12 3.59 -88.77 -0.32 -1.44 16 13 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.13 -2.00 4.74 -27.45 -0.13 -2.13 16 15 C 0.14 2.72 6.48 -4.40 -0.03 2.69 16 16 N -0.59 -13.69 2.90 -174.69 -0.51 -14.19 16 17 C -0.25 -6.56 9.67 -15.06 -0.15 -6.70 16 18 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 19 C 0.01 0.18 5.09 -17.43 -0.09 0.09 16 20 N -0.90 -25.21 11.03 55.49 0.61 -24.60 16 21 Si 0.90 21.33 29.57 -169.99 -5.03 16.31 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.18 3.91 4.67 -5.03 -0.02 3.89 16 26 C -0.11 -1.96 2.81 -90.74 -0.26 -2.22 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 C 0.12 2.23 5.89 -2.86 -0.02 2.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.83 7.95 -51.93 -0.41 0.42 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.46 6.15 -51.93 -0.32 1.14 16 34 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.07 0.83 6.65 -51.93 -0.35 0.49 16 36 H 0.07 0.74 6.91 -51.93 -0.36 0.39 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 39 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.09 2.35 6.10 -51.93 -0.32 2.03 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.39 8.11 -51.93 -0.42 0.96 16 45 H 0.09 1.75 7.55 -51.93 -0.39 1.36 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -30.17 361.16 -9.83 -40.00 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.70 Total: 0.13 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.02 Total: 3.19 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.59 Total: -54.98 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.01 Total: -0.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.17 -9.83 -40.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087986863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.810 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds