Wall clock time and date at job start Tue Mar 31 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47175 * 2 1 4 4 N 1.30946 * 122.90677 * 270.00196 * 3 2 1 5 5 C 1.29426 * 117.36578 * 180.02562 * 4 3 2 6 6 S 1.70951 * 110.39148 * 359.72186 * 5 4 3 7 7 C 1.35663 * 122.90570 * 89.99826 * 3 2 1 8 8 C 1.46684 * 126.12895 * 0.02562 * 7 3 2 9 9 O 1.21684 * 119.99891 * 354.17423 * 8 7 3 10 10 N 1.34775 * 120.00093 * 174.17617 * 8 7 3 11 11 C 1.47186 * 125.65024 * 4.89581 * 10 8 7 12 12 C 1.55411 * 106.93542 * 178.87377 * 11 10 8 13 13 H 1.09000 * 112.44855 * 145.11280 * 12 11 10 14 14 C 1.53083 * 106.81450 * 268.55359 * 12 11 10 15 15 C 1.51496 * 111.61691 * 163.91154 * 14 12 11 16 16 N 1.47237 * 107.90986 * 302.67524 * 15 14 12 17 17 C 1.36934 * 121.39153 * 237.95014 * 16 15 14 18 18 H 1.08001 * 120.00009 * 30.76605 * 17 16 15 19 19 C 1.38812 * 120.00273 * 210.77093 * 17 16 15 20 20 N 1.31620 * 119.99472 * 9.93873 * 19 17 16 21 21 Si 1.86797 * 120.00393 * 189.94020 * 19 17 16 22 22 H 1.48505 * 109.47152 * 89.99507 * 21 19 17 23 23 H 1.48493 * 109.47351 * 209.99504 * 21 19 17 24 24 H 1.48497 * 109.47082 * 329.99959 * 21 19 17 25 25 C 1.46698 * 117.21378 * 57.97565 * 16 15 14 26 26 C 1.50814 * 111.25036 * 307.84683 * 25 16 15 27 27 H 1.08999 * 109.22642 * 167.57689 * 26 25 16 28 28 C 1.47844 * 125.65070 * 184.93749 * 10 8 7 29 29 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47435 * 300.00121 * 1 2 3 31 31 H 1.09004 * 109.46846 * 59.99993 * 1 2 3 32 32 H 1.09007 * 109.47263 * 240.00424 * 2 1 3 33 33 H 1.09001 * 109.47576 * 120.00042 * 2 1 3 34 34 H 1.07997 * 124.80092 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.96787 * 59.50397 * 11 10 8 36 36 H 1.09000 * 109.96884 * 298.24678 * 11 10 8 37 37 H 1.09004 * 109.17853 * 284.35020 * 14 12 11 38 38 H 1.09000 * 109.18672 * 43.59794 * 14 12 11 39 39 H 1.09007 * 110.00821 * 182.89002 * 15 14 12 40 40 H 1.08991 * 109.46003 * 62.15046 * 15 14 12 41 41 H 0.97008 * 119.99635 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.12166 * 187.39059 * 25 16 15 43 43 H 1.08997 * 109.12553 * 68.30206 * 25 16 15 44 44 H 1.08995 * 110.52854 * 37.98273 * 28 10 8 45 45 H 1.09001 * 110.52725 * 275.23725 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2694 2.0915 -1.0994 5 6 2.6993 3.3059 -0.9744 6 16 2.8386 3.7214 0.6780 7 6 2.2779 2.1157 1.1390 8 6 2.1034 1.6207 2.5087 9 8 1.6041 0.5279 2.7017 10 7 2.4961 2.3762 3.5534 11 6 3.0176 3.7501 3.4705 12 6 3.3060 4.2134 4.9257 13 1 4.1792 4.8626 4.9904 14 6 2.0357 4.9022 5.4311 15 6 2.0427 5.0490 6.9389 16 7 2.1937 3.7063 7.5238 17 6 1.2642 3.1974 8.3911 18 1 0.2272 3.4854 8.3013 19 6 1.6547 2.3113 9.3857 20 7 2.9337 2.1103 9.6228 21 14 0.3652 1.4042 10.3876 22 1 0.0324 0.1203 9.7198 23 1 0.8962 1.1318 11.7473 24 1 -0.8582 2.2394 10.4920 25 6 3.3820 2.9367 7.1392 26 6 3.5259 2.8665 5.6396 27 1 4.5173 2.4877 5.3915 28 6 2.4751 1.9620 4.9725 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 2.9327 3.9649 -1.7975 35 1 2.2749 4.4031 3.0123 36 1 3.9375 3.7644 2.8861 37 1 1.9616 5.8919 4.9804 38 1 1.1676 4.3109 5.1399 39 1 1.1064 5.4950 7.2745 40 1 2.8801 5.6789 7.2385 41 1 3.2066 1.4908 10.3176 42 1 3.2969 1.9256 7.5375 43 1 4.2674 3.4123 7.5610 44 1 2.7569 0.9135 5.0688 45 1 1.4905 2.1355 5.4068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087986863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:35 Heat of formation + Delta-G solvation = 16.427677 kcal Electronic energy + Delta-G solvation = -27543.329816 eV Core-core repulsion = 23880.341310 eV Total energy + Delta-G solvation = -3662.988506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74145 -40.96305 -39.36923 -36.98161 -34.51789 -34.36882 -32.76335 -32.19281 -30.79989 -28.98347 -27.80406 -26.77722 -25.24989 -24.24852 -23.36598 -23.03247 -22.06976 -20.06403 -19.62004 -19.43437 -18.57821 -17.50242 -17.33875 -17.06614 -16.66073 -16.08457 -15.64796 -15.58427 -15.33675 -15.13948 -15.07528 -14.82845 -14.65228 -14.43067 -14.00798 -13.86980 -13.58771 -13.36637 -13.27854 -12.97354 -12.82829 -12.76800 -12.53243 -12.43638 -12.21625 -12.07418 -11.99465 -11.90167 -11.72950 -11.16019 -11.06434 -11.02349 -10.61635 -10.56918 -10.55170 -10.06108 -9.59709 -8.58911 -7.85857 -5.34640 -0.77707 0.19730 0.59568 1.37585 1.44702 1.47477 1.54095 1.80077 2.03293 2.50197 3.14740 3.29325 3.37584 3.51915 3.70436 3.78370 3.88026 3.97566 4.08790 4.21084 4.34263 4.36518 4.42982 4.43814 4.51421 4.56792 4.65454 4.71483 4.83100 4.92992 4.96257 4.98791 5.04578 5.10146 5.17388 5.19651 5.21785 5.28685 5.32295 5.36848 5.60065 5.66314 5.78177 6.34640 6.42895 6.59933 6.92147 7.18448 7.88370 8.42217 9.19546 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.003430 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.524434 B = 8162.430398 C = 9196.227407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C 0.140 3.860 4 N -0.501 5.501 5 C 0.029 3.971 6 S 0.239 5.761 7 C -0.324 4.324 8 C 0.599 3.401 9 O -0.563 6.563 10 N -0.611 5.611 11 C 0.092 3.908 12 C -0.070 4.070 13 H 0.124 0.876 14 C -0.119 4.119 15 C 0.138 3.862 16 N -0.607 5.607 17 C -0.254 4.254 18 H 0.061 0.939 19 C -0.043 4.043 20 N -0.932 5.932 21 Si 0.958 3.042 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.269 1.269 25 C 0.191 3.809 26 C -0.107 4.107 27 H 0.080 0.920 28 C 0.134 3.866 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.245 0.755 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.028 0.972 41 H 0.249 0.751 42 H 0.052 0.948 43 H 0.008 0.992 44 H 0.053 0.947 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 7.393 -22.251 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.099 4.099 3 C 0.001 3.999 4 N -0.215 5.215 5 C -0.265 4.265 6 S 0.496 5.504 7 C -0.448 4.448 8 C 0.388 3.612 9 O -0.445 6.445 10 N -0.343 5.343 11 C -0.030 4.030 12 C -0.089 4.089 13 H 0.142 0.858 14 C -0.158 4.158 15 C 0.013 3.987 16 N -0.331 5.331 17 C -0.385 4.385 18 H 0.078 0.922 19 C -0.239 4.239 20 N -0.578 5.578 21 Si 0.787 3.213 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.194 1.194 25 C 0.064 3.936 26 C -0.128 4.128 27 H 0.098 0.902 28 C 0.011 3.989 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.261 0.739 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.072 0.928 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.834 7.487 -22.123 23.527 hybrid contribution -0.921 -1.798 1.123 2.311 sum 1.913 5.689 -21.000 21.841 Atomic orbital electron populations 1.21518 0.93457 1.02687 1.00947 1.20336 0.97135 0.88768 1.03680 1.20786 0.95089 0.98484 0.85556 1.66218 1.16757 1.07697 1.30816 1.29675 0.98006 0.95486 1.03340 1.83893 1.57286 1.08457 1.00746 1.25341 1.20106 1.01885 0.97495 1.16691 0.77914 0.83794 0.82818 1.90774 1.45973 1.22375 1.85345 1.48550 1.63070 1.16348 1.06353 1.22740 1.00030 0.81371 0.98891 1.22148 0.99758 0.95804 0.91212 0.85837 1.21702 0.96436 1.00790 0.96839 1.20838 0.98932 0.86407 0.92568 1.44188 1.24514 1.13052 1.51336 1.19367 0.89170 1.23559 1.06371 0.92158 1.25759 0.97338 1.02655 0.98173 1.70093 1.14969 1.38753 1.33980 0.85410 0.79319 0.78721 0.77882 1.21843 1.21908 1.19428 1.19773 0.88040 0.96888 0.88872 1.22008 0.97852 0.95753 0.97200 0.90218 1.21878 0.99859 0.98209 0.78913 0.90716 0.94598 0.92128 0.89185 0.90198 0.73869 0.89263 0.88825 0.88877 0.94174 0.93027 0.95387 0.94180 0.92974 0.97442 0.92838 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 9.85 71.98 0.71 -2.38 16 2 C -0.06 -1.52 5.69 29.85 0.17 -1.36 16 3 C 0.14 3.60 6.04 42.09 0.25 3.85 16 4 N -0.50 -10.88 10.50 -190.40 -2.00 -12.88 16 5 C 0.03 0.40 12.22 130.60 1.60 1.99 16 6 S 0.24 3.63 18.74 -56.49 -1.06 2.57 16 7 C -0.32 -8.44 6.39 23.88 0.15 -8.28 16 8 C 0.60 19.78 7.79 86.45 0.67 20.45 16 9 O -0.56 -22.46 14.44 -4.30 -0.06 -22.52 16 10 N -0.61 -18.94 3.34 -814.91 -2.72 -21.66 16 11 C 0.09 2.07 4.52 87.08 0.39 2.46 16 12 C -0.07 -1.81 3.59 -9.59 -0.03 -1.85 16 13 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 14 C -0.12 -3.38 4.74 30.13 0.14 -3.23 16 15 C 0.14 5.13 6.48 85.75 0.56 5.69 16 16 N -0.61 -28.86 2.90 -706.60 -2.05 -30.90 16 17 C -0.25 -13.71 9.67 84.03 0.81 -12.90 16 18 H 0.06 3.23 7.85 -2.91 -0.02 3.21 16 19 C -0.04 -2.41 5.09 84.86 0.43 -1.98 16 20 N -0.93 -54.11 11.03 21.65 0.24 -53.87 16 21 Si 0.96 45.28 29.57 68.60 2.03 47.31 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 C 0.19 8.63 4.67 85.63 0.40 9.03 16 26 C -0.11 -3.69 2.81 -10.87 -0.03 -3.72 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 C 0.13 5.00 5.89 86.41 0.51 5.50 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.03 1.02 7.95 -2.39 -0.02 1.00 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.08 2.41 6.15 -2.39 -0.01 2.39 16 34 H 0.25 1.03 8.06 -2.91 -0.02 1.00 16 35 H 0.09 1.70 6.65 -2.39 -0.02 1.69 16 36 H 0.09 1.64 6.91 -2.39 -0.02 1.62 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.32 7.15 -2.39 -0.02 1.30 16 39 H 0.05 1.94 7.97 -2.38 -0.02 1.92 16 40 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 42 H 0.05 2.78 6.10 -2.39 -0.01 2.76 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.05 2.16 8.11 -2.39 -0.02 2.14 16 45 H 0.05 2.29 7.55 -2.39 -0.02 2.27 16 Total: -1.00 -70.82 361.16 2.11 -68.71 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.99 Total: 9.95 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.74 Total: 13.28 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -6.53 Total: -119.31 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.06 Total: 2.57 kcal Total: -70.82 2.11 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087986863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.138 kcal (2) G-P(sol) polarization free energy of solvation -70.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds