Wall clock time and date at job start Tue Mar 31 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50693 * 109.47528 * 2 1 4 4 N 1.29439 * 124.80135 * 89.97568 * 3 2 1 5 5 C 1.30937 * 117.36174 * 180.02562 * 4 3 2 6 6 C 1.35661 * 114.19396 * 0.02562 * 5 4 3 7 7 C 1.46686 * 126.13354 * 180.02562 * 6 5 4 8 8 O 1.21685 * 119.99614 * 353.38635 * 7 6 5 9 9 N 1.34771 * 120.00567 * 173.38913 * 7 6 5 10 10 C 1.48927 * 125.44688 * 4.79881 * 9 7 6 11 11 C 1.55413 * 106.06416 * 178.85872 * 10 9 7 12 12 H 1.09000 * 112.45078 * 145.56094 * 11 10 9 13 13 C 1.53083 * 106.23569 * 268.59897 * 11 10 9 14 14 C 1.52745 * 110.93379 * 164.37235 * 13 11 10 15 15 N 1.47228 * 107.71058 * 302.04510 * 14 13 11 16 16 C 1.36931 * 121.39210 * 238.33855 * 15 14 13 17 17 H 1.07997 * 120.00528 * 35.14092 * 16 15 14 18 18 C 1.38814 * 119.99930 * 215.13631 * 16 15 14 19 19 N 1.31621 * 120.00002 * 12.16229 * 18 16 15 20 20 Si 1.86796 * 120.00253 * 192.16079 * 18 16 15 21 21 H 1.48496 * 109.47549 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47286 * 300.00628 * 20 18 16 23 23 H 1.48511 * 109.47175 * 60.00183 * 20 18 16 24 24 C 1.46711 * 117.21548 * 58.60606 * 15 14 13 25 25 C 1.50091 * 111.15710 * 308.00667 * 24 15 14 26 26 H 1.09002 * 108.95252 * 167.23398 * 25 24 15 27 27 C 1.47844 * 125.65580 * 184.86359 * 9 7 6 28 28 S 1.70953 * 124.81003 * 270.29023 * 3 2 1 29 29 H 1.09007 * 109.46801 * 59.99552 * 1 2 3 30 30 H 1.08999 * 109.47868 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46968 * 300.00057 * 1 2 3 32 32 H 1.09008 * 109.47016 * 240.00222 * 2 1 3 33 33 H 1.09001 * 109.47131 * 120.00685 * 2 1 3 34 34 H 1.08002 * 122.90302 * 180.02562 * 5 4 3 35 35 H 1.09002 * 110.53404 * 59.69786 * 10 9 7 36 36 H 1.08994 * 110.24953 * 297.87429 * 10 9 7 37 37 H 1.09001 * 109.18739 * 43.99513 * 13 11 10 38 38 H 1.09001 * 109.14150 * 284.71950 * 13 11 10 39 39 H 1.08996 * 109.81407 * 182.49105 * 14 13 11 40 40 H 1.09005 * 109.80952 * 61.60091 * 14 13 11 41 41 H 0.97004 * 120.00065 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.11930 * 68.03594 * 24 15 14 43 43 H 1.08998 * 109.12258 * 187.12269 * 24 15 14 44 44 H 1.09000 * 110.52861 * 37.98565 * 27 9 7 45 45 H 1.09005 * 110.63913 * 275.30828 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2782 2.1174 1.0629 5 6 2.7107 3.3416 0.8933 6 6 2.8406 3.7104 -0.4057 7 6 3.3019 5.0150 -0.8924 8 8 3.4950 5.9239 -0.1067 9 7 3.5118 5.2071 -2.2097 10 6 3.2197 4.2180 -3.2841 11 6 3.6019 4.9107 -4.6218 12 1 4.0053 4.2101 -5.3530 13 6 2.3315 5.6014 -5.1243 14 6 2.6594 6.6232 -6.2114 15 7 3.6071 7.5951 -5.6414 16 6 3.3172 8.9326 -5.5977 17 1 2.3022 9.2600 -5.4279 18 6 4.3281 9.8679 -5.7717 19 7 5.5083 9.4870 -6.2126 20 14 4.0135 11.6671 -5.3802 21 1 5.2434 12.4547 -5.6490 22 1 2.9066 12.1727 -6.2312 23 1 3.6402 11.8044 -3.9493 24 6 4.8775 7.0713 -5.1275 25 6 4.6484 5.9437 -4.1638 26 1 5.5957 5.4363 -3.9810 27 6 4.0698 6.4306 -2.8241 28 16 2.3510 2.3431 -1.4036 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.9438 4.0007 1.7165 35 1 2.1608 3.9595 -3.2882 36 1 3.8219 3.3204 -3.1444 37 1 1.8459 6.1087 -4.2907 38 1 1.6536 4.8510 -5.5309 39 1 1.7492 7.1346 -6.5244 40 1 3.1141 6.1210 -7.0654 41 1 6.2147 10.1407 -6.3346 42 1 5.4762 6.7052 -5.9615 43 1 5.4183 7.8742 -4.6265 44 1 4.8573 6.8483 -2.1969 45 1 3.2851 7.1683 -2.9923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088217363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:03 Heat of formation + Delta-G solvation = 30.270856 kcal Electronic energy + Delta-G solvation = -27051.697936 eV Core-core repulsion = 23389.309716 eV Total energy + Delta-G solvation = -3662.388220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38700 -39.79852 -38.10035 -35.29082 -34.33777 -32.67661 -31.31050 -30.57914 -29.80688 -27.51777 -26.61270 -25.45205 -23.84451 -23.06055 -21.98067 -21.51149 -21.09794 -18.82048 -18.53686 -18.34748 -17.05292 -16.22415 -15.98536 -15.91068 -15.17645 -14.90901 -14.68580 -14.32662 -14.21219 -13.97203 -13.75893 -13.62593 -13.47762 -12.98341 -12.67641 -12.55266 -12.34939 -12.13261 -12.08834 -11.90059 -11.72254 -11.57466 -11.09067 -11.00220 -10.80630 -10.74412 -10.59726 -10.28346 -10.10501 -9.99565 -9.73589 -9.69043 -9.52218 -9.45833 -9.15273 -8.57732 -8.42183 -6.61687 -5.84277 -3.34817 0.08696 0.98793 1.41137 2.32990 2.97806 3.18374 3.37092 3.42673 3.44691 3.77656 4.44513 4.45752 4.53739 4.70178 4.77475 4.79833 5.00087 5.05074 5.14894 5.23063 5.30439 5.36668 5.39336 5.48749 5.52114 5.57829 5.71813 5.74597 5.80350 5.91528 6.01855 6.12547 6.22303 6.29559 6.37816 6.46055 6.64377 6.71059 6.76704 6.92846 7.16931 7.40224 7.50169 7.56750 7.77133 8.13463 8.43576 9.16830 9.76939 10.40639 11.24266 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002950 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.696335 B = 9488.432961 C =10095.534199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.050 4.050 3 C 0.037 3.963 4 N -0.480 5.480 5 C 0.113 3.887 6 C -0.282 4.282 7 C 0.603 3.397 8 O -0.531 6.531 9 N -0.611 5.611 10 C 0.089 3.911 11 C -0.078 4.078 12 H 0.092 0.908 13 C -0.131 4.131 14 C 0.142 3.858 15 N -0.586 5.586 16 C -0.257 4.257 17 H 0.062 0.938 18 C 0.012 3.988 19 N -0.900 5.900 20 Si 0.901 3.099 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.182 3.818 25 C -0.112 4.112 26 H 0.065 0.935 27 C 0.123 3.877 28 S 0.184 5.816 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.187 0.813 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.255 0.745 42 H 0.026 0.974 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -20.389 7.286 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.090 4.090 3 C -0.238 4.238 4 N -0.194 5.194 5 C -0.044 4.044 6 C -0.407 4.407 7 C 0.389 3.611 8 O -0.410 6.410 9 N -0.344 5.344 10 C -0.035 4.035 11 C -0.097 4.097 12 H 0.110 0.890 13 C -0.170 4.170 14 C 0.016 3.984 15 N -0.309 5.309 16 C -0.386 4.386 17 H 0.079 0.921 18 C -0.188 4.188 19 N -0.543 5.543 20 Si 0.731 3.269 21 H -0.216 1.216 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.055 3.945 25 C -0.133 4.133 26 H 0.084 0.916 27 C 0.003 3.997 28 S 0.441 5.559 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.203 0.797 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.453 -20.248 7.158 22.424 hybrid contribution 0.173 1.441 0.981 1.752 sum -6.280 -18.807 8.139 21.433 Atomic orbital electron populations 1.21782 0.93249 1.02726 1.02875 1.20272 0.96892 0.87422 1.04446 1.27748 1.01125 1.02155 0.92740 1.66246 1.15412 1.06054 1.31664 1.22139 0.95416 0.91379 0.95468 1.25819 1.16723 1.00344 0.97766 1.16335 0.78142 0.85294 0.81302 1.90848 1.53095 1.42405 1.54622 1.48997 1.62519 1.18370 1.04513 1.22941 1.00345 0.91708 0.88491 1.22096 0.97144 0.96809 0.93653 0.88956 1.22082 0.95355 0.98713 1.00843 1.20902 0.94213 0.90680 0.92598 1.43900 1.16447 1.02674 1.67897 1.18997 0.94486 0.81043 1.44119 0.92056 1.25242 0.97008 0.98096 0.98438 1.69970 1.03485 1.33646 1.47209 0.86404 0.77097 0.84899 0.78548 1.21578 1.20781 1.20773 1.19860 0.88698 0.92786 0.93166 1.22089 0.96957 0.98432 0.95785 0.91646 1.22299 0.98694 0.85847 0.92891 1.84221 1.57826 1.03720 1.10086 0.92229 0.91202 0.91861 0.89435 0.88676 0.79653 0.90878 0.91358 0.92116 0.93038 0.92543 0.96023 0.93461 0.95641 0.89922 0.90828 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.15 0.37 -0.49 16 2 C -0.05 -0.33 6.51 -27.89 -0.18 -0.51 16 3 C 0.04 0.37 6.64 -13.29 -0.09 0.28 16 4 N -0.48 -5.94 10.51 -11.50 -0.12 -6.06 16 5 C 0.11 1.50 11.10 -18.85 -0.21 1.29 16 6 C -0.28 -3.90 6.40 -37.09 -0.24 -4.14 16 7 C 0.60 10.18 7.81 -12.85 -0.10 10.08 16 8 O -0.53 -10.73 17.19 5.20 0.09 -10.64 16 9 N -0.61 -9.80 3.38 -170.14 -0.58 -10.38 16 10 C 0.09 1.14 4.57 -1.42 -0.01 1.14 16 11 C -0.08 -1.12 3.58 -88.76 -0.32 -1.44 16 12 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.13 -2.03 4.78 -26.82 -0.13 -2.16 16 14 C 0.14 2.74 6.52 -3.78 -0.02 2.72 16 15 N -0.59 -13.69 2.79 -174.36 -0.49 -14.18 16 16 C -0.26 -6.76 9.61 -15.06 -0.14 -6.90 16 17 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 18 C 0.01 0.32 5.01 -17.43 -0.09 0.24 16 19 N -0.90 -25.28 11.48 55.49 0.64 -24.64 16 20 Si 0.90 21.39 29.57 -169.99 -5.03 16.37 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.18 3.97 4.60 -5.37 -0.02 3.94 16 25 C -0.11 -1.93 2.82 -91.10 -0.26 -2.19 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 C 0.12 2.25 5.81 -2.86 -0.02 2.23 16 28 S 0.18 1.86 18.68 -107.50 -2.01 -0.14 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.41 8.14 -51.92 -0.42 -0.02 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 35 H 0.07 0.86 6.61 -51.93 -0.34 0.52 16 36 H 0.07 0.76 6.97 -51.93 -0.36 0.40 16 37 H 0.06 1.05 7.11 -51.93 -0.37 0.68 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.09 7.96 -51.93 -0.41 0.68 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 2.06 6.50 -51.93 -0.34 1.72 16 44 H 0.07 1.40 8.11 -51.93 -0.42 0.98 16 45 H 0.09 1.80 7.46 -51.93 -0.39 1.42 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -30.97 366.94 -10.25 -41.22 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.83 Total: -1.17 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.46 Total: 4.10 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.54 Total: -55.26 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.01 Total: -0.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.97 -10.25 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088217363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.491 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds