Wall clock time and date at job start Tue Mar 31 2020 18:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50693 * 109.47528 * 2 1 4 4 N 1.29439 * 124.80135 * 89.97568 * 3 2 1 5 5 C 1.30937 * 117.36174 * 180.02562 * 4 3 2 6 6 C 1.35661 * 114.19396 * 0.02562 * 5 4 3 7 7 C 1.46686 * 126.13354 * 180.02562 * 6 5 4 8 8 O 1.21685 * 119.99614 * 353.38635 * 7 6 5 9 9 N 1.34771 * 120.00567 * 173.38913 * 7 6 5 10 10 C 1.48927 * 125.44688 * 4.79881 * 9 7 6 11 11 C 1.55413 * 106.06416 * 178.85872 * 10 9 7 12 12 H 1.09000 * 112.45078 * 145.56094 * 11 10 9 13 13 C 1.53083 * 106.23569 * 268.59897 * 11 10 9 14 14 C 1.52745 * 110.93379 * 164.37235 * 13 11 10 15 15 N 1.47228 * 107.71058 * 302.04510 * 14 13 11 16 16 C 1.36931 * 121.39210 * 238.33855 * 15 14 13 17 17 H 1.07997 * 120.00528 * 35.14092 * 16 15 14 18 18 C 1.38814 * 119.99930 * 215.13631 * 16 15 14 19 19 N 1.31621 * 120.00002 * 12.16229 * 18 16 15 20 20 Si 1.86796 * 120.00253 * 192.16079 * 18 16 15 21 21 H 1.48496 * 109.47549 * 180.02562 * 20 18 16 22 22 H 1.48500 * 109.47286 * 300.00628 * 20 18 16 23 23 H 1.48511 * 109.47175 * 60.00183 * 20 18 16 24 24 C 1.46711 * 117.21548 * 58.60606 * 15 14 13 25 25 C 1.50091 * 111.15710 * 308.00667 * 24 15 14 26 26 H 1.09002 * 108.95252 * 167.23398 * 25 24 15 27 27 C 1.47844 * 125.65580 * 184.86359 * 9 7 6 28 28 S 1.70953 * 124.81003 * 270.29023 * 3 2 1 29 29 H 1.09007 * 109.46801 * 59.99552 * 1 2 3 30 30 H 1.08999 * 109.47868 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46968 * 300.00057 * 1 2 3 32 32 H 1.09008 * 109.47016 * 240.00222 * 2 1 3 33 33 H 1.09001 * 109.47131 * 120.00685 * 2 1 3 34 34 H 1.08002 * 122.90302 * 180.02562 * 5 4 3 35 35 H 1.09002 * 110.53404 * 59.69786 * 10 9 7 36 36 H 1.08994 * 110.24953 * 297.87429 * 10 9 7 37 37 H 1.09001 * 109.18739 * 43.99513 * 13 11 10 38 38 H 1.09001 * 109.14150 * 284.71950 * 13 11 10 39 39 H 1.08996 * 109.81407 * 182.49105 * 14 13 11 40 40 H 1.09005 * 109.80952 * 61.60091 * 14 13 11 41 41 H 0.97004 * 120.00065 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.11930 * 68.03594 * 24 15 14 43 43 H 1.08998 * 109.12258 * 187.12269 * 24 15 14 44 44 H 1.09000 * 110.52861 * 37.98565 * 27 9 7 45 45 H 1.09005 * 110.63913 * 275.30828 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2782 2.1174 1.0629 5 6 2.7107 3.3416 0.8933 6 6 2.8406 3.7104 -0.4057 7 6 3.3019 5.0150 -0.8924 8 8 3.4950 5.9239 -0.1067 9 7 3.5118 5.2071 -2.2097 10 6 3.2197 4.2180 -3.2841 11 6 3.6019 4.9107 -4.6218 12 1 4.0053 4.2101 -5.3530 13 6 2.3315 5.6014 -5.1243 14 6 2.6594 6.6232 -6.2114 15 7 3.6071 7.5951 -5.6414 16 6 3.3172 8.9326 -5.5977 17 1 2.3022 9.2600 -5.4279 18 6 4.3281 9.8679 -5.7717 19 7 5.5083 9.4870 -6.2126 20 14 4.0135 11.6671 -5.3802 21 1 5.2434 12.4547 -5.6490 22 1 2.9066 12.1727 -6.2312 23 1 3.6402 11.8044 -3.9493 24 6 4.8775 7.0713 -5.1275 25 6 4.6484 5.9437 -4.1638 26 1 5.5957 5.4363 -3.9810 27 6 4.0698 6.4306 -2.8241 28 16 2.3510 2.3431 -1.4036 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.9438 4.0007 1.7165 35 1 2.1608 3.9595 -3.2882 36 1 3.8219 3.3204 -3.1444 37 1 1.8459 6.1087 -4.2907 38 1 1.6536 4.8510 -5.5309 39 1 1.7492 7.1346 -6.5244 40 1 3.1141 6.1210 -7.0654 41 1 6.2147 10.1407 -6.3346 42 1 5.4762 6.7052 -5.9615 43 1 5.4183 7.8742 -4.6265 44 1 4.8573 6.8483 -2.1969 45 1 3.2851 7.1683 -2.9923 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088217363.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:02 Heat of formation + Delta-G solvation = 11.295573 kcal Electronic energy + Delta-G solvation = -27052.520766 eV Core-core repulsion = 23389.309716 eV Total energy + Delta-G solvation = -3663.211050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62039 -40.84644 -39.46561 -36.91052 -34.96400 -34.36443 -32.71102 -32.25881 -30.84081 -28.96267 -27.79599 -26.76630 -25.32083 -23.84278 -23.34181 -23.03373 -22.24551 -20.08725 -19.73964 -19.49769 -18.58113 -17.54276 -17.32318 -17.14152 -16.65904 -16.09968 -15.74913 -15.59462 -15.38261 -15.23683 -14.93687 -14.86268 -14.63213 -14.45089 -14.06831 -13.86987 -13.57971 -13.29886 -13.23000 -12.82349 -12.79485 -12.73967 -12.56396 -12.54392 -12.35508 -12.10038 -12.06625 -12.02559 -11.78597 -11.31288 -11.06882 -11.05186 -10.63127 -10.56583 -10.54908 -10.13646 -9.68739 -8.54302 -7.87985 -5.40031 -0.84346 0.11099 0.52305 1.31480 1.43917 1.46852 1.52138 1.72692 2.02172 2.49055 3.00716 3.26976 3.32358 3.51357 3.69947 3.76707 3.88106 3.89197 4.16344 4.20091 4.27804 4.32098 4.33288 4.41956 4.50607 4.64658 4.67414 4.69547 4.80906 4.95357 4.96969 4.99681 5.02070 5.09259 5.10090 5.17465 5.18622 5.31450 5.33847 5.35458 5.56449 5.66428 5.72230 6.26847 6.42948 6.55803 6.84702 7.17579 7.86219 8.43286 9.17125 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002950 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.696335 B = 9488.432961 C =10095.534199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.045 3.955 4 N -0.504 5.504 5 C 0.117 3.883 6 C -0.320 4.320 7 C 0.600 3.400 8 O -0.580 6.580 9 N -0.611 5.611 10 C 0.092 3.908 11 C -0.071 4.071 12 H 0.126 0.874 13 C -0.120 4.120 14 C 0.138 3.862 15 N -0.605 5.605 16 C -0.260 4.260 17 H 0.057 0.943 18 C -0.038 4.038 19 N -0.929 5.929 20 Si 0.956 3.044 21 H -0.293 1.293 22 H -0.273 1.273 23 H -0.284 1.284 24 C 0.194 3.806 25 C -0.105 4.105 26 H 0.083 0.917 27 C 0.132 3.868 28 S 0.248 5.752 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.180 0.820 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.029 0.971 41 H 0.250 0.750 42 H 0.009 0.991 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 -24.338 6.691 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.228 4.228 4 N -0.219 5.219 5 C -0.042 4.042 6 C -0.444 4.444 7 C 0.389 3.611 8 O -0.462 6.462 9 N -0.343 5.343 10 C -0.030 4.030 11 C -0.089 4.089 12 H 0.144 0.856 13 C -0.159 4.159 14 C 0.013 3.987 15 N -0.329 5.329 16 C -0.391 4.391 17 H 0.074 0.926 18 C -0.235 4.235 19 N -0.573 5.573 20 Si 0.784 3.216 21 H -0.219 1.219 22 H -0.199 1.199 23 H -0.211 1.211 24 C 0.067 3.933 25 C -0.126 4.126 26 H 0.101 0.899 27 C 0.009 3.991 28 S 0.506 5.494 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.197 0.803 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.059 0.941 38 H 0.112 0.888 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.026 -24.251 6.526 26.365 hybrid contribution 0.568 2.561 1.167 2.871 sum -7.458 -21.690 7.693 24.192 Atomic orbital electron populations 1.21796 0.92506 1.04029 1.02187 1.20552 0.97342 0.85210 1.06206 1.28493 0.98682 1.03259 0.92365 1.66331 1.16900 1.05839 1.32795 1.22180 0.94758 0.91843 0.95448 1.25516 1.19263 1.00589 0.99035 1.16756 0.77309 0.86051 0.81010 1.90807 1.55205 1.44405 1.55811 1.48997 1.62146 1.18124 1.05080 1.23118 1.02206 0.91511 0.86199 1.22156 0.95352 0.96231 0.95197 0.85587 1.21962 0.96645 0.98499 0.98807 1.21072 0.92924 0.90682 0.94069 1.44133 1.17440 1.02564 1.68775 1.19236 0.94232 0.82885 1.42710 0.92560 1.25859 0.97062 1.01384 0.99205 1.70096 1.04050 1.34266 1.48935 0.85528 0.76858 0.81123 0.78041 1.21863 1.19904 1.21085 1.19578 0.87754 0.92865 0.93057 1.21853 0.99059 0.97727 0.93941 0.89916 1.21934 0.97162 0.86493 0.93460 1.83760 1.56417 1.00791 1.08388 0.92002 0.88975 0.93486 0.86533 0.88082 0.80307 0.88845 0.88437 0.94123 0.88762 0.93172 0.95301 0.94071 0.97285 0.94051 0.92823 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.89 71.98 0.71 -0.46 16 2 C -0.05 -0.47 6.51 29.84 0.19 -0.28 16 3 C 0.05 0.77 6.64 88.46 0.59 1.35 16 4 N -0.50 -11.63 10.51 -190.30 -2.00 -13.63 16 5 C 0.12 3.03 11.10 84.23 0.93 3.97 16 6 C -0.32 -8.44 6.40 23.88 0.15 -8.29 16 7 C 0.60 20.36 7.81 86.45 0.68 21.04 16 8 O -0.58 -24.58 17.19 -4.30 -0.07 -24.66 16 9 N -0.61 -19.15 3.38 -810.42 -2.74 -21.89 16 10 C 0.09 2.02 4.57 86.74 0.40 2.42 16 11 C -0.07 -1.79 3.58 -9.59 -0.03 -1.83 16 12 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 13 C -0.12 -3.39 4.78 30.54 0.15 -3.25 16 14 C 0.14 5.15 6.52 86.16 0.56 5.71 16 15 N -0.61 -28.80 2.79 -705.56 -1.97 -30.77 16 16 C -0.26 -14.09 9.61 84.03 0.81 -13.28 16 17 H 0.06 3.04 7.86 -2.91 -0.02 3.02 16 18 C -0.04 -2.14 5.01 84.86 0.42 -1.71 16 19 N -0.93 -54.14 11.48 21.65 0.25 -53.90 16 20 Si 0.96 45.37 29.57 68.60 2.03 47.40 16 21 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 24 C 0.19 8.72 4.60 85.40 0.39 9.12 16 25 C -0.11 -3.58 2.82 -11.10 -0.03 -3.61 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 27 C 0.13 4.94 5.81 86.41 0.50 5.44 16 28 S 0.25 4.06 18.68 -56.49 -1.06 3.01 16 29 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.43 8.14 -2.38 -0.02 0.42 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.18 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.09 1.74 6.61 -2.39 -0.02 1.73 16 36 H 0.10 1.66 6.97 -2.39 -0.02 1.64 16 37 H 0.04 1.33 7.11 -2.39 -0.02 1.31 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.90 7.96 -2.39 -0.02 1.88 16 40 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.04 2.18 6.50 -2.39 -0.02 2.16 16 44 H 0.05 2.18 8.11 -2.39 -0.02 2.16 16 45 H 0.05 2.39 7.46 -2.38 -0.02 2.37 16 Total: -1.00 -72.35 366.94 1.85 -70.50 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.99 Total: 7.59 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.42 Total: 16.35 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.46 Total: -120.18 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.07 Total: -24.66 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.06 Total: 3.01 kcal Total: -72.35 1.85 -70.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088217363.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.791 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds