Wall clock time and date at job start Tue Mar 31 2020 18:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47241 * 2 1 4 4 N 1.29435 * 124.80484 * 89.97007 * 3 2 1 5 5 C 1.30941 * 117.36389 * 179.73035 * 4 3 2 6 6 C 1.50699 * 122.90723 * 180.34723 * 5 4 3 7 7 C 1.35669 * 114.18828 * 0.52651 * 5 4 3 8 8 C 1.46680 * 126.12913 * 179.78648 * 7 5 4 9 9 O 1.21687 * 119.99930 * 359.71727 * 8 7 5 10 10 N 1.34777 * 119.99981 * 179.71510 * 8 7 5 11 11 C 1.46500 * 119.99899 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.68743 * 37.44556 * 11 10 8 13 13 C 1.54851 * 110.62616 * 160.44219 * 11 10 8 14 14 C 1.55849 * 103.44670 * 118.48914 * 13 11 10 15 15 H 1.09000 * 115.55952 * 158.81278 * 14 13 11 16 16 C 1.55848 * 105.05802 * 288.17138 * 14 13 11 17 17 C 1.55877 * 103.52821 * 72.43199 * 16 14 13 18 18 C 1.55845 * 102.97111 * 359.11860 * 17 16 14 19 19 H 1.08998 * 115.55808 * 159.69105 * 18 17 16 20 20 N 1.50230 * 101.05338 * 32.93514 * 14 13 11 21 21 C 1.36937 * 130.84168 * 126.01297 * 20 14 13 22 22 H 1.07993 * 120.00543 * 172.00760 * 21 20 14 23 23 C 1.38812 * 119.99453 * 352.00765 * 21 20 14 24 24 N 1.31619 * 120.00435 * 6.23680 * 23 21 20 25 25 Si 1.86807 * 119.99749 * 186.23295 * 23 21 20 26 26 H 1.48507 * 109.46783 * 94.98439 * 25 23 21 27 27 H 1.48494 * 109.46984 * 214.98228 * 25 23 21 28 28 H 1.48498 * 109.46911 * 334.98508 * 25 23 21 29 29 S 1.70951 * 124.80548 * 269.99730 * 3 2 1 30 30 H 1.08998 * 109.46779 * 60.00274 * 1 2 3 31 31 H 1.08997 * 109.47204 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47401 * 300.00730 * 1 2 3 33 33 H 1.08997 * 109.47544 * 239.99806 * 2 1 3 34 34 H 1.09008 * 109.46896 * 119.99204 * 2 1 3 35 35 H 1.08995 * 109.47207 * 270.19386 * 6 5 4 36 36 H 1.09005 * 109.46897 * 30.19480 * 6 5 4 37 37 H 1.08999 * 109.47193 * 150.19107 * 6 5 4 38 38 H 0.97000 * 119.99924 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.62739 * 359.97438 * 13 11 10 40 40 H 1.09004 * 110.62036 * 236.97731 * 13 11 10 41 41 H 1.09005 * 110.62226 * 190.31775 * 16 14 13 42 42 H 1.08995 * 110.62951 * 313.17234 * 16 14 13 43 43 H 1.08995 * 110.09555 * 241.13236 * 17 16 14 44 44 H 1.08996 * 111.59795 * 117.80544 * 17 16 14 45 45 H 0.97002 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0628 5 6 2.7162 3.3398 0.8932 6 6 3.0487 4.2570 2.0417 7 6 2.8411 3.7103 -0.4059 8 6 3.3021 5.0149 -0.8926 9 8 3.6100 5.8858 -0.1004 10 7 3.3847 5.2492 -2.2173 11 6 3.8456 6.5521 -2.7034 12 1 4.6410 6.9408 -2.0676 13 6 4.3232 6.4482 -4.1728 14 6 3.3612 7.4085 -4.9352 15 1 3.7226 7.7692 -5.8983 16 6 1.9854 6.6766 -4.9488 17 6 1.4954 6.7938 -3.4737 18 6 2.6601 7.5609 -2.7782 19 1 2.4039 8.0558 -1.8414 20 7 3.1174 8.4607 -3.8910 21 6 3.2664 9.8211 -3.9386 22 1 2.9165 10.4317 -3.1195 23 6 3.8674 10.4153 -5.0399 24 7 4.1826 9.6874 -6.0902 25 14 4.2289 12.2480 -5.0311 26 1 5.6287 12.4743 -4.5898 27 1 4.0467 12.7950 -6.3996 28 1 3.2987 12.9315 -4.0969 29 16 2.3577 2.3408 -1.4037 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.1608 4.8227 2.3238 36 1 3.3883 3.6659 2.8923 37 1 3.8377 4.9459 1.7399 38 1 3.1396 4.5549 -2.8488 39 1 4.2175 5.4273 -4.5397 40 1 5.3556 6.7855 -4.2657 41 1 1.2877 7.1828 -5.6161 42 1 2.1078 5.6342 -5.2426 43 1 1.3755 5.8015 -3.0390 44 1 0.5666 7.3598 -3.4032 45 1 4.6022 10.1027 -6.8599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096154574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:03 Heat of formation + Delta-G solvation = 48.168588 kcal Electronic energy + Delta-G solvation = -26967.093653 eV Core-core repulsion = 23305.481537 eV Total energy + Delta-G solvation = -3661.612116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.52482 -39.72922 -38.18104 -34.58598 -34.02979 -32.37010 -31.05253 -29.53243 -29.09920 -28.56893 -27.11937 -25.75149 -24.23217 -22.34805 -22.09326 -21.19898 -19.78864 -19.39488 -18.60531 -17.99142 -17.19171 -16.58985 -15.77207 -15.59854 -14.95840 -14.90403 -14.73523 -14.40734 -14.10088 -13.92359 -13.69815 -13.59326 -13.14940 -12.67709 -12.36414 -12.27379 -12.16964 -12.02526 -11.80095 -11.59000 -11.52288 -11.45740 -11.08810 -10.95062 -10.91640 -10.83391 -10.25791 -10.11079 -10.06828 -9.89352 -9.71295 -9.66513 -9.39628 -9.33555 -8.92875 -8.89120 -8.54811 -6.92569 -5.76437 -3.13253 0.09667 0.98212 1.39538 2.32498 3.23829 3.29923 3.39678 3.45083 3.46284 3.71752 4.44085 4.48852 4.72027 4.77158 4.83345 5.01714 5.16804 5.17744 5.35784 5.38527 5.49349 5.52379 5.62402 5.68379 5.76589 5.77422 5.80379 5.81139 5.91698 6.04407 6.08437 6.22396 6.28745 6.30916 6.50002 6.57380 6.62640 6.77582 6.91562 6.96022 7.22550 7.43073 7.52382 7.65771 7.77526 8.13685 8.33361 9.07975 9.70753 10.51872 11.33926 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024157 B = 0.002860 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.803277 B = 9787.172376 C =10422.810299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.061 3.939 4 N -0.476 5.476 5 C 0.144 3.856 6 C -0.089 4.089 7 C -0.290 4.290 8 C 0.591 3.409 9 O -0.523 6.523 10 N -0.704 5.704 11 C 0.129 3.871 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.155 3.845 15 H 0.154 0.846 16 C -0.138 4.138 17 C -0.130 4.130 18 C 0.129 3.871 19 H 0.086 0.914 20 N -0.589 5.589 21 C -0.212 4.212 22 H 0.079 0.921 23 C -0.010 4.010 24 N -0.921 5.921 25 Si 0.915 3.085 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 S 0.155 5.845 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.392 0.608 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 -20.714 8.398 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.090 4.090 3 C -0.215 4.215 4 N -0.191 5.191 5 C 0.007 3.993 6 C -0.148 4.148 7 C -0.414 4.414 8 C 0.375 3.625 9 O -0.401 6.401 10 N -0.355 5.355 11 C 0.023 3.977 12 H 0.104 0.896 13 C -0.179 4.179 14 C 0.048 3.952 15 H 0.171 0.829 16 C -0.178 4.178 17 C -0.170 4.170 18 C 0.020 3.980 19 H 0.104 0.896 20 N -0.309 5.309 21 C -0.339 4.339 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.746 3.254 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.207 1.207 29 S 0.412 5.588 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.226 0.774 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.766 -20.210 8.184 22.319 hybrid contribution 0.192 0.981 0.388 1.073 sum -4.575 -19.229 8.571 21.544 Atomic orbital electron populations 1.21785 0.93151 1.02773 1.02950 1.20301 0.96984 0.87184 1.04562 1.27381 1.01114 1.01763 0.91205 1.66067 1.15728 1.06025 1.31292 1.20668 0.94452 0.90395 0.93786 1.20661 1.03762 0.96994 0.93341 1.25620 1.17954 1.00742 0.97097 1.16668 0.78111 0.84660 0.83029 1.90787 1.49784 1.44726 1.54837 1.46179 1.66849 1.16880 1.05560 1.22711 0.98238 0.80986 0.95721 0.89604 1.23293 1.01531 0.99258 0.93860 1.23726 0.89973 0.85041 0.96461 0.82930 1.23247 1.00692 0.98254 0.95588 1.23069 0.98631 0.98490 0.96781 1.23197 0.92253 0.89995 0.92605 0.89615 1.46470 1.75753 1.01398 1.07317 1.19060 1.31599 0.79950 1.03341 0.90290 1.24742 1.01037 0.98265 0.96486 1.69470 1.47661 1.34143 1.05624 0.86038 0.78245 0.84345 0.76821 1.21617 1.21782 1.20659 1.83850 1.58889 1.04431 1.11607 0.92174 0.91157 0.91813 0.89332 0.88498 0.90119 0.90971 0.87990 0.77382 0.92793 0.91331 0.92695 0.93567 0.93398 0.92798 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.05 -0.32 6.51 -27.88 -0.18 -0.50 16 3 C 0.06 0.62 6.64 -13.29 -0.09 0.53 16 4 N -0.48 -5.98 10.50 -7.70 -0.08 -6.06 16 5 C 0.14 1.96 6.79 -83.89 -0.57 1.39 16 6 C -0.09 -1.11 9.69 36.01 0.35 -0.76 16 7 C -0.29 -3.99 6.48 -37.09 -0.24 -4.23 16 8 C 0.59 9.55 7.77 -12.85 -0.10 9.45 16 9 O -0.52 -9.92 14.01 5.20 0.07 -9.85 16 10 N -0.70 -10.89 3.65 -52.70 -0.19 -11.08 16 11 C 0.13 2.42 3.07 -65.43 -0.20 2.22 16 12 H 0.09 1.79 7.72 -51.93 -0.40 1.39 16 13 C -0.14 -2.64 6.20 -24.23 -0.15 -2.79 16 14 C 0.15 3.44 4.71 -62.80 -0.30 3.14 16 15 H 0.15 3.87 5.57 -51.93 -0.29 3.59 16 16 C -0.14 -2.63 6.46 -23.67 -0.15 -2.78 16 17 C -0.13 -2.41 6.42 -23.68 -0.15 -2.56 16 18 C 0.13 2.70 5.29 -62.80 -0.33 2.36 16 19 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 20 N -0.59 -14.56 2.98 -145.81 -0.43 -14.99 16 21 C -0.21 -5.80 10.57 -15.06 -0.16 -5.96 16 22 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -25.87 10.52 55.49 0.58 -25.29 16 25 Si 0.91 21.91 29.56 -169.99 -5.02 16.89 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 29 S 0.15 1.58 22.31 -107.50 -2.40 -0.82 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.43 6.02 -51.93 -0.31 1.12 16 38 H 0.39 5.20 7.24 -40.82 -0.30 4.90 16 39 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.74 7.82 -51.93 -0.41 0.34 16 43 H 0.05 0.78 6.57 -51.93 -0.34 0.44 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -30.72 370.84 -10.51 -41.23 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.62 Total: 5.73 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.00 Total: -1.35 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.12 Total: -57.42 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.40 Total: -0.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.72 -10.51 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096154574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.396 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds