Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47241 * 2 1 4 4 N 1.29435 * 124.80484 * 89.97007 * 3 2 1 5 5 C 1.30941 * 117.36389 * 179.73035 * 4 3 2 6 6 C 1.50699 * 122.90723 * 180.34723 * 5 4 3 7 7 C 1.35669 * 114.18828 * 0.52651 * 5 4 3 8 8 C 1.46680 * 126.12913 * 179.78648 * 7 5 4 9 9 O 1.21687 * 119.99930 * 359.71727 * 8 7 5 10 10 N 1.34777 * 119.99981 * 179.71510 * 8 7 5 11 11 C 1.46500 * 119.99899 * 180.02562 * 10 8 7 12 12 H 1.08996 * 110.68743 * 37.44556 * 11 10 8 13 13 C 1.54851 * 110.62616 * 160.44219 * 11 10 8 14 14 C 1.55849 * 103.44670 * 118.48914 * 13 11 10 15 15 H 1.09000 * 115.55952 * 158.81278 * 14 13 11 16 16 C 1.55848 * 105.05802 * 288.17138 * 14 13 11 17 17 C 1.55877 * 103.52821 * 72.43199 * 16 14 13 18 18 C 1.55845 * 102.97111 * 359.11860 * 17 16 14 19 19 H 1.08998 * 115.55808 * 159.69105 * 18 17 16 20 20 N 1.50230 * 101.05338 * 32.93514 * 14 13 11 21 21 C 1.36937 * 130.84168 * 126.01297 * 20 14 13 22 22 H 1.07993 * 120.00543 * 172.00760 * 21 20 14 23 23 C 1.38812 * 119.99453 * 352.00765 * 21 20 14 24 24 N 1.31619 * 120.00435 * 6.23680 * 23 21 20 25 25 Si 1.86807 * 119.99749 * 186.23295 * 23 21 20 26 26 H 1.48507 * 109.46783 * 94.98439 * 25 23 21 27 27 H 1.48494 * 109.46984 * 214.98228 * 25 23 21 28 28 H 1.48498 * 109.46911 * 334.98508 * 25 23 21 29 29 S 1.70951 * 124.80548 * 269.99730 * 3 2 1 30 30 H 1.08998 * 109.46779 * 60.00274 * 1 2 3 31 31 H 1.08997 * 109.47204 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47401 * 300.00730 * 1 2 3 33 33 H 1.08997 * 109.47544 * 239.99806 * 2 1 3 34 34 H 1.09008 * 109.46896 * 119.99204 * 2 1 3 35 35 H 1.08995 * 109.47207 * 270.19386 * 6 5 4 36 36 H 1.09005 * 109.46897 * 30.19480 * 6 5 4 37 37 H 1.08999 * 109.47193 * 150.19107 * 6 5 4 38 38 H 0.97000 * 119.99924 * 359.97438 * 10 8 7 39 39 H 1.08999 * 110.62739 * 359.97438 * 13 11 10 40 40 H 1.09004 * 110.62036 * 236.97731 * 13 11 10 41 41 H 1.09005 * 110.62226 * 190.31775 * 16 14 13 42 42 H 1.08995 * 110.62951 * 313.17234 * 16 14 13 43 43 H 1.08995 * 110.09555 * 241.13236 * 17 16 14 44 44 H 1.08996 * 111.59795 * 117.80544 * 17 16 14 45 45 H 0.97002 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0628 5 6 2.7162 3.3398 0.8932 6 6 3.0487 4.2570 2.0417 7 6 2.8411 3.7103 -0.4059 8 6 3.3021 5.0149 -0.8926 9 8 3.6100 5.8858 -0.1004 10 7 3.3847 5.2492 -2.2173 11 6 3.8456 6.5521 -2.7034 12 1 4.6410 6.9408 -2.0676 13 6 4.3232 6.4482 -4.1728 14 6 3.3612 7.4085 -4.9352 15 1 3.7226 7.7692 -5.8983 16 6 1.9854 6.6766 -4.9488 17 6 1.4954 6.7938 -3.4737 18 6 2.6601 7.5609 -2.7782 19 1 2.4039 8.0558 -1.8414 20 7 3.1174 8.4607 -3.8910 21 6 3.2664 9.8211 -3.9386 22 1 2.9165 10.4317 -3.1195 23 6 3.8674 10.4153 -5.0399 24 7 4.1826 9.6874 -6.0902 25 14 4.2289 12.2480 -5.0311 26 1 5.6287 12.4743 -4.5898 27 1 4.0467 12.7950 -6.3996 28 1 3.2987 12.9315 -4.0969 29 16 2.3577 2.3408 -1.4037 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.1608 4.8227 2.3238 36 1 3.3883 3.6659 2.8923 37 1 3.8377 4.9459 1.7399 38 1 3.1396 4.5549 -2.8488 39 1 4.2175 5.4273 -4.5397 40 1 5.3556 6.7855 -4.2657 41 1 1.2877 7.1828 -5.6161 42 1 2.1078 5.6342 -5.2426 43 1 1.3755 5.8015 -3.0390 44 1 0.5666 7.3598 -3.4032 45 1 4.6022 10.1027 -6.8599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096154574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = 30.045549 kcal Electronic energy + Delta-G solvation = -26967.879527 eV Core-core repulsion = 23305.481537 eV Total energy + Delta-G solvation = -3662.397990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71091 -41.00231 -39.57589 -35.57812 -35.22003 -34.26286 -31.91235 -30.99609 -30.93115 -29.95339 -28.51996 -26.45466 -26.10552 -23.57058 -22.84758 -22.65366 -21.43144 -20.67435 -20.13577 -18.96611 -18.90492 -17.85173 -16.98819 -16.77790 -16.76212 -16.21630 -15.86295 -15.72140 -15.33206 -15.19317 -14.78184 -14.45159 -14.12303 -14.08186 -13.86946 -13.53650 -13.45655 -13.22682 -12.94200 -12.89705 -12.81495 -12.61518 -12.55717 -12.43315 -12.37620 -12.05445 -12.00930 -11.92766 -11.61036 -11.25402 -11.08717 -11.05787 -10.79967 -10.72661 -10.58778 -10.09801 -9.74559 -8.86460 -7.82436 -5.20529 -0.82792 0.12439 0.50397 1.34447 1.45809 1.47693 1.55503 2.00426 2.07016 2.49095 2.94224 3.31869 3.48165 3.70062 3.79312 3.90453 4.03388 4.10219 4.13257 4.24572 4.30620 4.36201 4.44582 4.56461 4.57241 4.66945 4.68054 4.75051 4.79007 4.86832 4.93683 5.01090 5.02760 5.07614 5.12039 5.13194 5.28616 5.31658 5.36303 5.41553 5.52652 5.69087 5.86693 6.24938 6.40322 6.58462 7.03391 7.10071 7.67397 8.54305 9.25384 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.024157 B = 0.002860 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.803277 B = 9787.172376 C =10422.810299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 C 0.069 3.931 4 N -0.500 5.500 5 C 0.142 3.858 6 C -0.087 4.087 7 C -0.328 4.328 8 C 0.592 3.408 9 O -0.559 6.559 10 N -0.693 5.693 11 C 0.148 3.852 12 H 0.059 0.941 13 C -0.125 4.125 14 C 0.140 3.860 15 H 0.122 0.878 16 C -0.126 4.126 17 C -0.117 4.117 18 C 0.119 3.881 19 H 0.066 0.934 20 N -0.616 5.616 21 C -0.227 4.227 22 H 0.070 0.930 23 C -0.059 4.059 24 N -0.941 5.941 25 Si 0.973 3.027 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.276 1.276 29 S 0.214 5.786 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.407 0.593 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.038 0.962 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.045 0.955 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.950 -24.066 8.185 26.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.093 4.093 3 C -0.206 4.206 4 N -0.215 5.215 5 C 0.003 3.997 6 C -0.146 4.146 7 C -0.452 4.452 8 C 0.379 3.621 9 O -0.440 6.440 10 N -0.345 5.345 11 C 0.041 3.959 12 H 0.077 0.923 13 C -0.165 4.165 14 C 0.034 3.966 15 H 0.139 0.861 16 C -0.165 4.165 17 C -0.156 4.156 18 C 0.011 3.989 19 H 0.085 0.915 20 N -0.338 5.338 21 C -0.356 4.356 22 H 0.088 0.912 23 C -0.252 4.252 24 N -0.590 5.590 25 Si 0.802 3.198 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.201 1.201 29 S 0.472 5.528 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.134 0.866 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.244 0.756 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.064 0.936 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.807 -23.622 7.962 25.595 hybrid contribution 0.459 1.894 0.520 2.017 sum -5.347 -21.728 8.482 23.930 Atomic orbital electron populations 1.21794 0.92425 1.04060 1.02216 1.20576 0.97407 0.84970 1.06299 1.28163 0.98695 1.02872 0.90883 1.66146 1.17215 1.05776 1.32397 1.20822 0.93947 0.90958 0.93953 1.20600 1.03167 0.96913 0.93912 1.25370 1.20412 1.01126 0.98268 1.16969 0.77192 0.85303 0.82645 1.90775 1.51195 1.46359 1.55685 1.45875 1.66879 1.15883 1.05845 1.22165 0.96405 0.82007 0.95294 0.92284 1.23125 0.99559 1.00581 0.93222 1.23656 0.92535 0.85366 0.95043 0.86103 1.23146 0.98015 0.99988 0.95396 1.22963 0.96947 0.99433 0.96264 1.23311 0.94110 0.90127 0.91320 0.91546 1.46707 1.76459 1.01216 1.09440 1.19274 1.31429 0.81796 1.03077 0.91182 1.25425 1.01508 1.01858 0.96417 1.69681 1.48324 1.35162 1.05785 0.85132 0.77761 0.80267 0.76608 1.21746 1.21755 1.20074 1.83535 1.57503 1.01786 1.09928 0.92108 0.88931 0.93353 0.86599 0.87767 0.90037 0.89520 0.89902 0.75589 0.88680 0.93178 0.94296 0.89381 0.90356 0.93575 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 71.98 0.71 -0.47 16 2 C -0.05 -0.47 6.51 29.85 0.19 -0.28 16 3 C 0.07 1.18 6.64 88.46 0.59 1.76 16 4 N -0.50 -11.56 10.50 -178.28 -1.87 -13.43 16 5 C 0.14 3.70 6.79 42.10 0.29 3.99 16 6 C -0.09 -2.19 9.69 71.24 0.69 -1.50 16 7 C -0.33 -8.50 6.48 23.88 0.15 -8.34 16 8 C 0.59 18.74 7.77 86.45 0.67 19.42 16 9 O -0.56 -21.74 14.01 -4.31 -0.06 -21.80 16 10 N -0.69 -20.23 3.65 -438.86 -1.60 -21.83 16 11 C 0.15 5.51 3.07 46.61 0.14 5.66 16 12 H 0.06 2.53 7.72 -2.39 -0.02 2.52 16 13 C -0.13 -4.60 6.20 32.21 0.20 -4.40 16 14 C 0.14 6.21 4.71 46.23 0.22 6.43 16 15 H 0.12 6.26 5.57 -2.39 -0.01 6.25 16 16 C -0.13 -4.56 6.46 32.57 0.21 -4.34 16 17 C -0.12 -4.14 6.42 32.57 0.21 -3.93 16 18 C 0.12 5.06 5.29 46.23 0.24 5.31 16 19 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 20 N -0.62 -31.21 2.98 -615.24 -1.83 -33.05 16 21 C -0.23 -12.85 10.57 84.03 0.89 -11.97 16 22 H 0.07 3.95 7.84 -2.91 -0.02 3.93 16 23 C -0.06 -3.31 5.50 84.86 0.47 -2.85 16 24 N -0.94 -54.24 10.52 21.65 0.23 -54.01 16 25 Si 0.97 46.14 29.56 68.60 2.03 48.17 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 28 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 29 S 0.21 3.61 22.31 -56.49 -1.26 2.35 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.08 2.41 6.02 -2.39 -0.01 2.40 16 38 H 0.41 9.34 7.24 -92.71 -0.67 8.66 16 39 H 0.09 2.68 7.34 -2.39 -0.02 2.66 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.09 2.44 7.82 -2.39 -0.02 2.42 16 43 H 0.08 2.29 6.57 -2.39 -0.02 2.28 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.25 14.01 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -69.90 370.84 1.85 -68.05 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.34 Total: 21.07 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.88 Total: 4.48 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -5.08 Total: -122.31 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.06 Total: -21.80 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.26 Total: 2.35 kcal Total: -69.90 1.85 -68.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096154574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.096 kcal (2) G-P(sol) polarization free energy of solvation -69.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds