Wall clock time and date at job start Tue Mar 31 2020 18:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47090 * 2 1 4 4 C 1.50699 * 109.46922 * 120.00086 * 2 1 3 5 5 N 1.29424 * 124.80685 * 300.02473 * 4 2 1 6 6 C 1.30940 * 117.36541 * 179.69225 * 5 4 2 7 7 C 1.35660 * 114.19278 * 0.52019 * 6 5 4 8 8 C 1.46689 * 126.13380 * 179.79056 * 7 6 5 9 9 O 1.21679 * 120.00026 * 179.69168 * 8 7 6 10 10 N 1.34775 * 119.99540 * 359.68738 * 8 7 6 11 11 C 1.46498 * 119.99535 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.68809 * 37.06416 * 11 10 8 13 13 C 1.55481 * 110.60972 * 160.20460 * 11 10 8 14 14 C 1.55843 * 103.32901 * 118.41575 * 13 11 10 15 15 H 1.08994 * 116.12917 * 159.23900 * 14 13 11 16 16 C 1.55394 * 105.04351 * 288.04305 * 14 13 11 17 17 C 1.54850 * 103.48455 * 72.07523 * 16 14 13 18 18 C 1.55847 * 103.44876 * 359.87312 * 17 16 14 19 19 H 1.08996 * 115.56181 * 158.81485 * 18 17 16 20 20 N 1.50241 * 101.05242 * 33.02535 * 14 13 11 21 21 C 1.36933 * 130.84226 * 126.06505 * 20 14 13 22 22 H 1.08001 * 120.00085 * 161.17503 * 21 20 14 23 23 C 1.38815 * 119.99804 * 341.17949 * 21 20 14 24 24 N 1.31622 * 119.99763 * 334.39423 * 23 21 20 25 25 Si 1.86801 * 119.99949 * 154.39257 * 23 21 20 26 26 H 1.48495 * 109.46879 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.46777 * 60.00261 * 25 23 21 28 28 H 1.48502 * 109.46760 * 300.00268 * 25 23 21 29 29 S 1.70959 * 124.80444 * 120.00235 * 4 2 1 30 30 H 1.08996 * 109.46979 * 299.99674 * 1 2 3 31 31 H 1.08998 * 109.46986 * 60.00137 * 1 2 3 32 32 H 1.08999 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46842 * 239.99837 * 2 1 3 34 34 H 1.09000 * 109.47411 * 60.00186 * 3 2 1 35 35 H 1.09006 * 109.46933 * 179.97438 * 3 2 1 36 36 H 1.08998 * 109.47094 * 299.99796 * 3 2 1 37 37 H 1.08006 * 122.90872 * 180.34383 * 6 5 4 38 38 H 0.96993 * 120.00737 * 0.02562 * 10 8 7 39 39 H 1.09000 * 110.60945 * 0.02562 * 13 11 10 40 40 H 1.09000 * 110.89454 * 236.96422 * 13 11 10 41 41 H 1.08993 * 110.71380 * 313.51562 * 16 14 13 42 42 H 1.08999 * 110.49681 * 190.52351 * 16 14 13 43 43 H 1.09003 * 110.62503 * 241.38341 * 17 16 14 44 44 H 1.09002 * 110.62745 * 118.36069 * 17 16 14 45 45 H 0.96996 * 120.00085 * 1.64457 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7772 -0.3505 2.4472 6 6 2.2849 -1.0792 3.4094 7 6 3.0325 -2.1260 2.9787 8 6 3.7230 -3.1031 3.8275 9 8 4.3617 -4.0059 3.3201 10 7 3.6499 -3.0005 5.1694 11 6 4.3399 -3.9760 6.0171 12 1 5.2951 -4.2616 5.5764 13 6 4.5420 -3.4091 7.4507 14 6 3.7411 -4.4021 8.3459 15 1 4.0121 -4.4225 9.4014 16 6 2.2466 -4.0991 8.0470 17 6 2.0417 -4.6648 6.6202 18 6 3.4457 -5.2310 6.2498 19 1 3.4565 -5.9814 5.4593 20 7 3.9356 -5.6884 7.5944 21 6 4.4083 -6.9050 8.0088 22 1 4.2014 -7.7913 7.4273 23 6 5.1533 -6.9990 9.1762 24 7 5.8287 -5.9565 9.6117 25 14 5.1974 -8.6050 10.1293 26 1 6.0572 -8.4449 11.3294 27 1 5.7488 -9.6788 9.2643 28 1 3.8208 -8.9676 10.5519 29 16 3.0193 -2.1062 1.2167 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 2.1247 -0.8638 4.4556 38 1 3.1405 -2.2810 5.5739 39 1 4.1279 -2.4038 7.5276 40 1 5.5971 -3.4109 7.7243 41 1 2.0598 -3.0254 8.0649 42 1 1.6028 -4.6138 8.7602 43 1 1.7533 -3.8716 5.9304 44 1 1.2963 -5.4601 6.6258 45 1 5.7867 -5.1158 9.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096692594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:08 Heat of formation + Delta-G solvation = 25.669372 kcal Electronic energy + Delta-G solvation = -26695.415562 eV Core-core repulsion = 23032.827806 eV Total energy + Delta-G solvation = -3662.587756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.79744 -40.92714 -39.77843 -36.40275 -35.70869 -34.46177 -31.69855 -30.91441 -30.67317 -29.03110 -28.03729 -27.05050 -25.93125 -23.86172 -23.18462 -22.46200 -21.53815 -20.53001 -20.24231 -19.50385 -19.12948 -18.12837 -17.04115 -16.90233 -16.52387 -16.10919 -15.94929 -15.58614 -15.51982 -15.27740 -15.19625 -14.83633 -14.71301 -14.00160 -13.79875 -13.54049 -13.47223 -12.99422 -12.96742 -12.65503 -12.65055 -12.62762 -12.56166 -12.41757 -12.13590 -11.95625 -11.94444 -11.86809 -11.67962 -11.52459 -11.39860 -11.06532 -10.62566 -10.60378 -10.56388 -10.21038 -9.95570 -8.97052 -8.41806 -5.31245 -0.83652 0.06605 0.61961 1.35221 1.55262 1.63220 1.82186 2.05664 2.08000 2.60765 2.96348 3.17592 3.32968 3.61842 3.74888 3.75276 3.89945 3.98134 4.05299 4.12133 4.13226 4.22479 4.29259 4.41626 4.47153 4.53893 4.60778 4.80701 4.82060 4.83632 4.87454 4.95727 4.95894 4.98077 5.01396 5.10898 5.18588 5.28248 5.35465 5.40672 5.41956 5.53306 5.62049 6.28102 6.37844 6.52497 6.81683 7.06759 7.64184 8.41092 9.04186 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.002482 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.946223 B =11279.997448 C =11484.805608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.137 4.137 4 C 0.064 3.936 5 N -0.489 5.489 6 C 0.112 3.888 7 C -0.321 4.321 8 C 0.591 3.409 9 O -0.584 6.584 10 N -0.682 5.682 11 C 0.149 3.851 12 H 0.049 0.951 13 C -0.121 4.121 14 C 0.132 3.868 15 H 0.075 0.925 16 C -0.120 4.120 17 C -0.114 4.114 18 C 0.117 3.883 19 H 0.061 0.939 20 N -0.622 5.622 21 C -0.334 4.334 22 H 0.050 0.950 23 C -0.078 4.078 24 N -0.949 5.949 25 Si 1.121 2.879 26 H -0.288 1.288 27 H -0.281 1.281 28 H -0.280 1.280 29 S 0.212 5.788 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.207 0.793 38 H 0.415 0.585 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.376 18.007 -18.052 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.210 4.210 5 N -0.203 5.203 6 C -0.048 4.048 7 C -0.446 4.446 8 C 0.378 3.622 9 O -0.465 6.465 10 N -0.334 5.334 11 C 0.041 3.959 12 H 0.067 0.933 13 C -0.161 4.161 14 C 0.026 3.974 15 H 0.093 0.907 16 C -0.158 4.158 17 C -0.153 4.153 18 C 0.009 3.991 19 H 0.079 0.921 20 N -0.346 5.346 21 C -0.463 4.463 22 H 0.067 0.933 23 C -0.274 4.274 24 N -0.592 5.592 25 Si 0.946 3.054 26 H -0.214 1.214 27 H -0.207 1.207 28 H -0.207 1.207 29 S 0.472 5.528 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.224 0.776 38 H 0.254 0.746 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.070 16.217 -17.761 26.476 hybrid contribution -0.343 0.565 -0.027 0.661 sum -11.413 16.781 -17.788 26.987 Atomic orbital electron populations 1.21806 0.91767 1.02459 1.03587 1.20172 0.97694 0.96595 0.90071 1.21804 1.01025 0.93178 1.03585 1.28206 0.97948 0.96916 0.97949 1.66145 1.24391 1.30842 0.98872 1.22587 0.92046 0.88673 1.01460 1.25513 1.14179 1.06330 0.98569 1.17055 0.79544 0.83196 0.82417 1.90839 1.44488 1.36527 1.74695 1.45657 1.52377 1.31061 1.04354 1.22219 0.94727 0.88972 0.89941 0.93257 1.23191 1.00374 0.99623 0.92894 1.22950 0.94570 0.84751 0.95150 0.90741 1.22827 0.95815 1.01069 0.96138 1.22811 0.95659 0.99861 0.96965 1.23347 0.94753 0.93023 0.87983 0.92113 1.46757 1.74375 1.08513 1.04969 1.19890 1.31766 0.84350 1.10282 0.93260 1.27126 0.93563 1.07676 0.99003 1.70891 1.37690 1.04348 1.46246 0.82740 0.76472 0.71126 0.75091 1.21395 1.20690 1.20663 1.84179 1.44186 1.24506 0.99918 0.92390 0.89271 0.92816 0.87245 0.92402 0.92790 0.89268 0.77615 0.74578 0.87318 0.93360 0.88245 0.93275 0.89389 0.93418 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.17 71.98 0.66 -0.63 16 2 C -0.02 -0.25 3.35 -11.54 -0.04 -0.29 16 3 C -0.14 -1.27 9.17 71.98 0.66 -0.61 16 4 C 0.06 1.09 5.90 88.46 0.52 1.61 16 5 N -0.49 -9.36 10.49 -190.30 -2.00 -11.35 16 6 C 0.11 2.11 10.93 84.23 0.92 3.03 16 7 C -0.32 -7.78 6.48 23.88 0.15 -7.62 16 8 C 0.59 18.50 7.78 86.45 0.67 19.17 16 9 O -0.58 -24.02 16.70 -4.28 -0.07 -24.09 16 10 N -0.68 -18.94 3.62 -437.82 -1.59 -20.52 16 11 C 0.15 5.58 3.10 46.83 0.15 5.72 16 12 H 0.05 2.23 7.71 -2.39 -0.02 2.22 16 13 C -0.12 -4.34 6.08 32.43 0.20 -4.15 16 14 C 0.13 5.63 3.78 46.07 0.17 5.81 16 15 H 0.07 3.66 6.80 -2.39 -0.02 3.64 16 16 C -0.12 -3.94 6.42 32.05 0.21 -3.73 16 17 C -0.11 -3.82 6.32 32.21 0.20 -3.62 16 18 C 0.12 5.00 5.35 46.23 0.25 5.25 16 19 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 20 N -0.62 -31.77 2.81 -616.07 -1.73 -33.51 16 21 C -0.33 -19.60 10.39 84.03 0.87 -18.72 16 22 H 0.05 2.95 7.95 -2.91 -0.02 2.93 16 23 C -0.08 -4.54 5.29 84.86 0.45 -4.09 16 24 N -0.95 -58.08 12.91 21.65 0.28 -57.80 16 25 Si 1.12 52.55 29.99 68.60 2.06 54.61 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 28 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 29 S 0.21 4.41 23.00 -56.49 -1.30 3.11 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 0.79 8.12 -2.39 -0.02 0.78 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.21 2.53 7.15 -2.91 -0.02 2.51 16 38 H 0.42 8.02 6.73 -92.71 -0.62 7.39 16 39 H 0.11 2.80 7.33 -2.39 -0.02 2.78 16 40 H 0.05 1.97 7.64 -2.39 -0.02 1.95 16 41 H 0.10 2.37 7.80 -2.39 -0.02 2.35 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 2.34 6.48 -2.39 -0.02 2.33 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.26 15.85 5.57 -92.71 -0.52 15.33 16 Total: -1.00 -77.34 372.92 2.34 -75.00 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.64 Total: 17.41 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 6.05 Total: -2.86 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -5.03 Total: -123.18 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.06 Total: 54.61 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.30 Total: 3.11 kcal Total: -77.34 2.34 -75.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096692594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.668 kcal (2) G-P(sol) polarization free energy of solvation -77.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds